skembel's diversity [46 articles] Export

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	Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale [My Copy] Appl. Environ. Microbiol., Vol. 75, No. 15. (1 August 2009), pp. 5111-5120. by Christian L. Lauber, Micah Hamady, Rob Knight, Noah Fierer posted to pyrosequencing ph diversity community_structure bacterial by skembel on 2009-11-18 22:39:51 as along with 1 person elbrodie
	Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates [My Copy] Environmental Microbiology, Vol. 9999, No. 9999. (2009) by Victor Kunin, Anna Engelbrektson, Howard Ochman, Philip Hugenholtz posted to pyrosequencing methods diversity by skembel on 2009-09-03 20:05:56 as along with 2 people and 1 group jgill jmeppley iSEEM
	Global patterns of diversity and community structure in marine bacterioplankton [My Copy] Molecular Ecology, Vol. 16, No. 4. (February 2007), pp. 867-880. by T. Pommier, B. Canbäck, L. Riemann, et al.K. H. Boström, K. Simu, P. Lundberg, A. Tunlid, Hagström posted to microbial marine diversity communityecology by skembel on 2009-09-03 00:11:28 as along with 3 people and 1 group hwright jdelcampo beatrizfernandez Microbial-Ecology
	A New Phylogenetic Diversity Measure Generalizing the Shannon Index and Its Application to Phyllostomid Bats. [My Copy] The American Naturalist, Vol. 174, No. 2. (1 August 2009), pp. 236-243. by Benjamin Allen, Mark Kon, Yaneer Bar‐yam posted to shannon phylodiversity diversity by skembel on 2009-08-27 00:17:49 as
	Accurate determination of microbial diversity from 454 pyrosequencing data. [My Copy] Nature methods, Vol. 6, No. 9. (09 September 2009), pp. 639-641. by Christopher Quince, Anders Lanzén, Thomas P. Curtis, et al.Russell J. Davenport, Neil Hall, Ian M. Head, L. Fiona Read, William T. Sloan posted to otu diversity 454 by skembel on 2009-08-21 22:29:55 as along with 7 people and 2 groups halinat kinestetika jgill jonilaserson druvus orzenil danmaclean iSEEM Bioinformatics
	Ecological limits and diversification rate: alternative paradigms to explain the variation in species richness among clades and regions [My Copy] Ecology Letters, Vol. 12, No. 8. (2009), pp. 735-743. by Daniel L. Rabosky posted to comparativemethods diversification diversity by skembel on 2009-07-14 23:07:56 as along with 3 people and 1 group tkeitt gfox iBartomeus behavior_flexibility
	Microbial community structure and its functional implications [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 193-199. by Jed A. Fuhrman posted to communityecology diversity functionaldiversity microbes by skembel on 2009-05-13 20:55:31 as along with 4 people and 1 group hwright jmeppley Thaverkamp djkt iSEEM
	Microbial diversity - insights from population genetics [My Copy] Environmental Microbiology, Vol. 0, No. 0. (0000), pp. ???-???. by Ted H. Mes posted to diversity microbial popgen by skembel on 2009-05-01 18:18:17 as along with 7 people and 3 groups adgrativol jonathaneisen jmeppley kinestetika Katje Thaverkamp Olaf_Ilzins iSEEM Microbial-Ecology microbiology_nijmegen
	Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 6. (10 February 2009), pp. 1948-1953. by J. M. Brulc, D. A. Antonopoulos, M. E. Miller, et al.M. K. Wilson, A. C. Yannarell, E. A. Dinsdale, R. E. Edwards, E. D. Frank, J. B. Emerson, P. Wacklin, P. M. Coutinho, B. Henrissat, K. E. Nelson, B. A. White posted to diversity metagenomics microbiome by skembel on 2009-04-20 23:48:40 as along with 2 people and 1 group jlgreen jmeppley iSEEM
	Estimating prokaryotic diversity and its limits. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 16. (6 August 2002), pp. 10494-10499. by T. P. Curtis, W. T. Sloan, J. W. Scannell posted to diversity microbial by skembel on 2009-03-10 23:43:02 as along with 4 people florisbuijzen fornstar liucun mcox
	A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont [My Copy] Nature, Vol. 417, No. 6884. (2 May 2002), pp. 63-67. by Harald Huber, Michael J. Hohn, Reinhard Rachel, Tanja Fuchs, Verena C. Wimmer, Karl O. Stetter posted to 16s diversity microbial by skembel on 2009-03-10 23:42:41 as
	Lineages of acidophilic archaea revealed by community genomic analysis. [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1933-1935. by B. J. Baker, G. W. Tyson, R. I. Webb, et al.J. Flanagan, P. Hugenholtz, E. E. Allen, J. F. Banfield posted to archaea diversity metagenomics by skembel on 2009-01-27 17:49:38 as along with 3 people sharpton tkandell theseuskf
	Interpreting Ecological Diversity Indices Applied to Terminal Restriction Fragment Length Polymorphism Data: Insights from Simulated Microbial Communities [My Copy] Appl. Environ. Microbiol., Vol. 73, No. 16. (15 August 2007), pp. 5276-5283. by Christopher B. Blackwood, Deborah Hudleston, Donald R. Zak, Jeffrey S. Buyer posted to diversity by skembel on 2009-01-22 00:23:31 as along with 1 person Olaf_Ilzins
	Partitioning diversity into independent alpha and beta components. [My Copy] Ecology, Vol. 88, No. 10. (October 2007), pp. 2427-2439. by L. Jost posted to betadiversity diversity by skembel on 2009-01-22 00:21:17 as
	GST and its relatives do not measure differentiation [My Copy] Molecular Ecology, Vol. 17, No. 18. (September 2008), pp. 4015-4026. by L. O. U. Jost posted to diversity methods by skembel on 2009-01-22 00:20:01 as along with 3 people jsatkosk rs heinokonrad
	It's all relative: ranking the diversity of aquatic bacterial communities. [My Copy] Environmental microbiology (14 July 2008) by Allison K K. Shaw, Aaron L L. Halpern, Karen Beeson, Bao Tran, J Craig C. Venter, Jennifer B H B. Martiny posted to diversity metagenomics by skembel on 2009-01-09 01:06:32 as along with 3 people and 1 group idoerg liucun skato_toyaku iSEEM
	Artifacts and Artifictions in Biodiversity Research [My Copy] Folia Geobotanica, Vol. 43, No. 3. (2008), pp. 245-257. by Michael Palmer, Daniel Mcglinn, Jason Fridley posted to diversity methods by skembel on 2008-12-05 21:54:51 as along with 1 person liucun
	Novelty and Uniqueness Patterns of Rare Members of the Soil Biosphere [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 17. (1 September 2008), pp. 5422-5428. by Mostafa S. Elshahed, Noha H. Youssef, Anne M. Spain, et al.Cody Sheik, Fares Z. Najar, Leonid O. Sukharnikov, Bruce A. Roe, James P. Davis, Patrick D. Schloss, Vanessa L. Bailey, Lee R. Krumholz posted to diversity microbial rarity by skembel on 2008-11-24 18:43:31 as
	Microbial diversity in the deep sea and the underexplored "rare biosphere". [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 32. (8 August 2006), pp. 12115-12120. by Mitchell L. Sogin, Hilary G. Morrison, Julie A. Huber, et al.David Mark Welch, Susan M. Huse, Phillip R. Neal, Jesus M. Arrieta, Gerhard J. Herndl posted to 454 diversity pyrosequencing by skembel on 2008-11-24 18:40:48 as along with 13 people and 2 groups idoerg hwright jbhiatt skato_toyaku jmeppley balicea madhadron rabu bluto xingxu kinestetika mcox Olaf_Ilzins iSEEM microbiology_nijmegen
	Short-Term Temporal Variability in Airborne Bacterial and Fungal Populations [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 1. (1 January 2008), pp. 200-207. by Noah Fierer, Zongzhi Liu, Mari Rodriguez-Hernandez, Rob Knight, Matthew Henn, Mark T. Hernandez posted to diversity sampling by skembel on 2008-11-24 00:20:35 as
	The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing [My Copy] PLoS Biol, Vol. 6, No. 11. (18 November 2008), e280. by Les Dethlefsen, Sue Huse, Mitchell L. Sogin, David A. Relman posted to 454 diversity microbiome pyrosequencing by skembel on 2008-11-24 00:02:07 as along with 7 people and 2 groups hexaquo azazello sconlan jmeppley treangen maggiecontreras djkt Waikato - Erebus iSEEM
	Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing [My Copy] PLoS Genet, Vol. 4, No. 11. (21 November 2008), e1000255. by Susan M. Huse, Les Dethlefsen, Julie A. Huber, David M. Welch, David A. Relman, Mitchell L. Sogin posted to diversity microbial by skembel on 2008-11-23 21:20:41 as along with 4 people and 2 groups Huub_odc azazello sconlan djkt microbiology_nijmegen iSEEM
	A novel genealogical approach to neutral biodiversity theory [My Copy] Ecology Letters, Vol. 7, No. 3. (2004), pp. 170-175. by Rampal S. Etienne, Han Olff posted to diversity neutral by skembel on 2008-11-21 21:34:33 as
	Functional metagenomic profiling of nine biomes [My Copy] Nature, Vol. 455, No. 7214. (October 2008), pp. 830-830. by Elizabeth A. Dinsdale, Robert A. Edwards, Dana Hall, et al.Florent Angly, Mya Breitbart, Jennifer M. Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren Mcdaniel, Mary A. Moran, Karen E. Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R. Brito, Yijun Ruan, Brandon K. Swan, Rick Stevens, David L. Valentine, Rebecca V. Thurber, Linda Wegley, Bryan A. White, Forest Rohwer posted to diversity functionaldiversity by skembel on 2008-11-21 21:20:43 as along with 1 group iSEEM
	Entropy and diversity [My Copy] Oikos, Vol. 113, No. 2. (May 2006), pp. 363-375. by Jost, Lou posted to diversity entropy by skembel on 2008-11-21 21:17:37 as
	A STANDARDIZED GENETIC DIFFERENTIATION MEASURE [My Copy] Evolution, Vol. 59, No. 8. (2005), pp. 1633-1638. by Philip W. Hedrick posted to betadiversity diversity methods by skembel on 2008-11-21 21:16:48 as
	Towards a unifying approach to diversity measures: Bridging the gap between the Shannon entropy and Rao's quadratic index [My Copy] Theoretical Population Biology, Vol. 70, No. 3. (November 2006), pp. 237-243. by C. Ricotta, L. Szeidl posted to diversity entropy by skembel on 2008-11-20 20:34:27 as along with 1 person liucun
	A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library [My Copy] Nucl. Acids Res. (5 August 2008), gkn496. by Chaysavanh Manichanh, Charles E. Chapple, Lionel Frangeul, Karine Gloux, Roderic Guigo, Joel Dore posted to diversity metagenomics methods by skembel on 2008-11-19 19:17:16 as along with 3 people and 1 group bluto sconlan druvus iSEEM
	Metagenomics reveals our incomplete knowledge of global diversity. [My Copy] Bioinformatics (Oxford, England) (13 July 2008) by Miguel Pignatelli, Gabriel Aparicio, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames posted to diversity metagenomics by skembel on 2008-11-19 19:16:25 as along with 10 people and 3 groups hwright Thaverkamp jmeppley microrita druvus vaulot reyez djkt bootsy nuin Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
	Virus movement maintains local virus population diversity. [My Copy] Proc Natl Acad Sci U S A (19 November 2007) by Jamie C C. Snyder, Blake Wiedenheft, Matthew Lavin, et al.Francisco F F. Roberto, Josh Spuhler, Alice C C. Ortmann, Trevor Douglas, Mark Young posted to diversity viral by skembel on 2008-11-18 23:08:28 as along with 1 person saru
	Measurement of biological information with applications from genes to landscapes [My Copy] Molecular Ecology, Vol. 15, No. 10. (September 2006), pp. 2857-2869. by William B. Sherwin, Franck Jabot, Rebecca Rush, Maurizio Rossetto posted to diversity entropy by skembel on 2008-11-18 23:05:40 as along with 1 person and 1 group liucun iSEEM
	The rational exploration of microbial diversity. [My Copy] The ISME journal (24 July 2008) by Christopher Quince, Thomas P P. Curtis, William T T. Sloan posted to diversity by skembel on 2008-11-18 22:01:06 as along with 4 people and 1 group druvus Katje madhadron skato_toyaku microbiology_nijmegen
	Diversity and dissimilarity coefficients: A unified approach [My Copy] Theoretical Population Biology, Vol. 21, No. 1. (February 1982), pp. 24-43. by C. Rao posted to diversity entropy functionaldiversity phylodiversity by skembel on 2008-11-18 20:48:38 as along with 1 person and 1 group liucun iSEEM
	Bridging the gap between ecological diversity indices and measures of biodiversity with Shannon's entropy: comment to Izsák and Papp [My Copy] Ecological Modelling, Vol. 152, No. 1. (15 June 2002), pp. 1-3. by C. Ricotta posted to diversity entropy phylodiversity by skembel on 2008-11-18 20:48:08 as along with 1 person and 1 group liucun iSEEM
	High-resolution metagenomics targets specific functional types in complex microbial communities [My Copy] Nature Biotechnology, Vol. 26, No. 9. (17 August 2008), pp. 1029-1034. by Marina G. Kalyuzhnaya, Alla Lapidus, Natalia Ivanova, et al.Alex C. Copeland, Alice C. Mchardy, Ernest Szeto, Asaf Salamov, Igor V. Grigoriev, Dominic Suciu, Samuel R. Levine, Victor M. Markowitz, Isidore Rigoutsos, Susannah G. Tringe, David C. Bruce, Paul M. Richardson, Mary E. Lidstrom, Ludmila Chistoserdova posted to diversity functionaldiversity by skembel on 2008-11-17 23:18:18 as along with 10 people and 2 groups sameersoi Thaverkamp EKotlarska jbhiatt jmeppley sriesenfeld apostola Katje Huub_odc zwang Microbial-Ecology microbiology_nijmegen
	Functional metagenomic profiling of nine biomes [My Copy] Nature, Vol. 452, No. 7187. (12 March 2008), pp. 629-632. by Elizabeth A. Dinsdale, Robert A. Edwards, Dana Hall, et al.Florent Angly, Mya Breitbart, Jennifer M. Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren McDaniel, Mary A. Moran, Karen E. Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R. Brito, Yijun Ruan, Brandon K. Swan, Rick Stevens, David L. Valentine, Rebecca V. Thurber, Linda Wegley, Bryan A. White, Forest Rohwer posted to diversity microbial viral by skembel on 2008-11-17 23:15:58 as along with 17 people and 6 groups idoerg Thaverkamp shuzhens anphony michaelbarton azazello guhjy djkt neils kinestetika bluto oelemento alexisfjdufresne vaulot jmeppley vrich jlgreen Savage Lab, UCLA microbiology_nijmegen Microbial-Ecology Papers recommended by the Roscoff Plankton Group Green Lab iSEEM
	Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth [My Copy] Science, Vol. 322, No. 5899. (10 October 2008), pp. 275-278. by Dylan Chivian, Eoin L. Brodie, Eric J. Alm, et al.David E. Culley, Paramvir S. Dehal, Todd Z. DeSantis, Thomas M. Gihring, Alla Lapidus, Li-Hung Lin, Stephen R. Lowry, Duane P. Moser, Paul M. Richardson, Gordon Southam, Greg Wanger, Lisa M. Pratt, Gary L. Andersen, Terry C. Hazen, Fred J. Brockman, Adam P. Arkin, Tullis C. Onstott posted to 16s 454 diversity microbial sanger by skembel on 2008-11-15 01:01:56 as along with 9 people and 4 groups yyfwuhan lflorez claymans vaulot djkt Katje dinnes neils kinestetika Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM microbiology_nijmegen
	Diversity and seasonal dynamics of bacterial community in indoor environment [My Copy] BMC Microbiology, Vol. 8, No. 1. (2008) by Helena Rintala, Miia Pitkaranta, Mika Toivola, Lars Paulin, Aino Nevalainen posted to communityecology diversity microbial by skembel on 2008-11-14 22:38:13 as along with 1 person wanyusong
	The diversity and biogeography of soil bacterial communities. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 3. (17 January 2006), pp. 626-631. by N. Fierer, R. B. Jackson posted to diversity microbial by skembel on 2008-11-13 23:44:38 as along with 3 people and 1 group idoerg fornstar djkt iSEEM
	Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil [My Copy] Appl. Environ. Microbiol., Vol. 73, No. 21. (1 November 2007), pp. 7059-7066. by Noah Fierer, Mya Breitbart, James Nulton, et al.Peter Salamon, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert A. Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, Robert B. Jackson posted to diversity by skembel on 2008-11-13 23:42:15 as along with 4 people and 1 group jlgreen mellabee kerekesj vrich iSEEM
	The last word: books as a statistical metaphor for microbial communities. [My Copy] Annual review of microbiology, Vol. 61 (2007), pp. 23-34. by P. D. Schloss, J. Handelsman posted to diversity microbial by skembel on 2008-11-13 23:35:46 as along with 1 person and 1 group madhadron iSEEM
	Short pyrosequencing reads suffice for accurate microbial community analysis [My Copy] Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), e120. by Zongzhi Liu, Catherine Lozupone, Micah Hamady, Frederic D. Bushman, Rob Knight posted to diversity methods microbial by skembel on 2008-11-07 00:17:26 as along with 4 people and 2 groups niallhaslam vrich jlgreen djkt Green Lab iSEEM
	From the Cover: A latitudinal diversity gradient in planktonic marine bacteria [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7774-7778. by Jed A. Fuhrman, Joshua A. Steele, Ian Hewson, et al.Michael S. Schwalbach, Mark V. Brown, Jessica L. Green, James H. Brown posted to diversity microbial by skembel on 2008-11-07 00:16:28 as along with 6 people and 4 groups hwright paulm skato_toyaku jlgreen vaulot djkt Green Lab iSEEM Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Global patterns in bacterial diversity [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 27. (3 July 2007), pp. 11436-11440. by Catherine A. Lozupone, Rob Knight posted to diversity microbial by skembel on 2008-11-07 00:07:06 as along with 1 person and 1 group jonathaneisen iSEEM
	The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity. [My Copy] The ISME journal (8 May 2008) by Stephen J J. Bent, Larry J J. Forney posted to diversity by skembel on 2008-07-31 05:35:09 as along with 7 people and 4 groups lorenalizarraga80 microrita druvus vaulot jdelcampo jlgreen djkt Papers recommended by the Roscoff Plankton Group Microbial-Ecology Green Lab iSEEM
	How individual species structure diversity in tropical forests. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 48. (27 November 2007), pp. 19029-19033. by T. Wiegand, C. V. Gunatilleke, I. A. Gunatilleke, A. Huth posted to bci diversity by skembel on 2008-07-30 23:10:28 as along with 1 person liucun

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diversity	46
phylogenetics	42
metagenomics	40
microbial	32
methods	28
phylodiversity	20
communityecology	15
genomics	14
microbiome	13
pyrosequencing	12
comparativemethods	10
microbes	8
454	7
neutral	7
16s	6
alignment	6
betadiversity	6
diversification	6
entropy	6
roots	6
selection	6
software	6
functionaldiversity	5
ocean	5
phylogenomics	5
phylotyping	5
ecology	4
gos	4
phylogeny	4
supermatrix	4
supertrees	4
traits	4
viral	4
adaptation	3
bacteria	3
bayesian	3
biogeography	3
foraging	3
fungi	3
leaves	3
niche	3
r	3
roc	3
abundance	2
air	2
ants	2
cf	2
coalescent	2
community	2
competition	2
endophytes	2
evolution	2
genetics	2
genomes	2
gut	2
ml	2
nextgensequencing	2
otu	2
profiling	2
simulation	2
species	2
angiosperms	1
annotation	1
archaea	1
bacterial	1
barcode	1
bats	1
bci	1
belowground	1
binning	1
bioinformatics	1
bootstrap	1
climatechange	1
clustering	1
coevolution	1
cogs	1
community_ecology	1
community_structure	1
copy_number	1
cystic_fibrosis	1
data	1
depth	1
diatoms	1
dispersal	1
drift	1
ess	1
ffp	1
functional_characterization	1
funding	1
gene_prediction	1
grants	1
greedyalgorithm	1
hpc	1
incongruence	1
kmer	1
ltt	1
marine	1
mcmc	1
megatree	1
metabolic	1
metacommunity	1
metatranscriptomics	1
missingdata	1
mp	1
mutualisms	1
nserc	1
operon	1
orthologs	1
otus	1
outofafrica	1
partitioning	1
pd	1
ph	1
phenology	1
phyllosphere	1
phylochip	1
plants	1
popgen	1
profiles	1
proteomics	1
pseudomonas	1
rarity	1
rna	1
sampling	1
sanger	1
schizophrenia	1
sequencing	1
shannon	1
shewanella	1
shotgun_sequencing	1
spatial	1
speciation	1
symbioses	1
systems_biology	1
tag	1
teaching	1
transcriptome	1
treeoflife	1
underground	1
wow	1

skembel's diversity [46 articles] Export

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