skembel's no-tag [26 articles] Export

Recent papers added to skembel's library classified by the tag no-tag. You can also see everyone's no-tag.

	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted to no-tag by skembel on 2009-11-24 20:44:02 as along with 65 people and 8 groups dgront paulymer rvosa installe burak annakcroft brianb nuin pekrau Sergey_gerbek mordiano remoteFuture Yanno aaltenburger marekrud guhjy dolchan frohike operon CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom wei_tang fenghezi cisevol barry sdaehne druvus FAB-lab Pedro Martinez EvoDevo lab Barcelona Orengo Group Journal Picks Bioinformatics - CRUK ccsbs BergmanLab structural_bioinformatics McCammon
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to no-tag by skembel on 2009-11-23 21:09:06 as along with 17 people and 5 groups n00c operon michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje stajich semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen Mycology
	Bacterial Community Variation in Human Body Habitats Across Space and Time [My Copy] Science (5 November 2009), 1177486. by Elizabeth K. Costello, Christian L. Lauber, Micah Hamady, Noah Fierer, Jeffrey I. Gordon, Rob Knight posted to no-tag by skembel on 2009-11-06 21:45:52 as along with 3 people and 1 group kostanik74 djkt sharpton iSEEM
	What is microbial community ecology? [My Copy] The ISME Journal, Vol. 3, No. 11. (06 August 2009), pp. 1223-1230. by Allan Konopka posted to no-tag by skembel on 2009-10-28 20:35:26 as along with 2 people and 1 group pyilmaz djkt iSEEM
	Characterizing natural variation using next-generation sequencing technologies [My Copy] Trends in Genetics, Vol. 25, No. 10. (02 October 2009), pp. 463-471. by Yoav Gilad, Jonathan K. Pritchard, Kevin Thornton posted to no-tag by skembel on 2009-10-21 20:50:51 as along with 5 people and 1 group operon jwfoley djkt n00c natstreet iSEEM
	Intertwined Evolutionary Histories of Marine Synechococcus and Prochlorococcus marinus [My Copy] Genome Biol Evol, Vol. 2009, No. 0. (23 September 2009), pp. 325-339. by Olga Zhaxybayeva, W. Ford Doolittle, R. Thane Papke, J. Peter Gogarten posted to no-tag by skembel on 2009-10-02 19:50:30 as along with 1 person and 1 group djkt iSEEM
	Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 182. by Shibu Yooseph, Weizhong Li, Granger Sutton posted to no-tag by skembel on 2009-09-21 21:24:48 as along with 4 people jmeppley druvus neils alexl
	Community-wide analysis of microbial genome sequence signatures [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R85. by Gregory J. Dick, Anders F. Andersson, Brett J. Baker, et al.Sheri L. Simmons, Brian C. Thomas, A. Pepper Yelton, Jillian F. Banfield posted to no-tag by skembel on 2009-09-03 19:59:00 as along with 8 people and 2 groups ajsferreira dakelley druvus bdessailly djkt jonilaserson neils barriot Orengo Group Journal Picks iSEEM
	Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models [My Copy] Nature Methods, Vol. 6, No. 9. (02 August 2009), pp. 673-676. by Arthur Brady, Steven L. Salzberg posted to no-tag by skembel on 2009-08-26 21:03:12 as along with 8 people and 4 groups idoerg azazello robertrentzsch dakelley Thaverkamp sharpton jbhiatt stajich Orengo Group Journal Picks iSEEM Journal picks Mycology
	Local RNA structure alignment with incomplete sequence. [My Copy] Bioinformatics (Oxford, England) (20 March 2009) by Diana L L. Kolbe, Sean R R. Eddy posted to no-tag by skembel on 2009-08-25 22:30:38 as along with 4 people and 1 group reyez djkt nuin mhamada iSEEM
	ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences [My Copy] Nucl. Acids Res., Vol. 37, No. 10. (1 June 2009), e76. by Yijun Sun, Yunpeng Cai, Li Liu, et al.Fahong Yu, Michael L. Farrell, William Mckendree, William Farmerie posted to no-tag by skembel on 2009-08-22 01:18:50 as along with 2 people and 1 group esyoun jlgreen iSEEM
	Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (7 August 2009), e1000455. by Jing Tang, William P. Hanage, Christophe Fraser, Jukka Corander posted to no-tag by skembel on 2009-08-07 18:39:36 as along with 3 people and 1 group jjray operon djkt iSEEM
	Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics [My Copy] Microbial Ecology, Vol. 58, No. 1. (1 July 2009), pp. 189-198. by Amanda Redford, Noah Fierer posted to no-tag by skembel on 2009-07-14 00:29:01 as along with 1 person maren
	Dynamics of transposable elements: towards a community ecology of the genome [My Copy] Trends in Genetics, Vol. 25, No. 7. (18 July 2009), pp. 317-323. by Samuel Venner, Cédric Feschotte, Christian Biémont posted to no-tag by skembel on 2009-07-14 00:05:03 as along with 3 people and 1 group timflutre diamantis djkt iSEEM
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted to no-tag by skembel on 2009-07-04 21:37:57 as along with 7 people and 1 group dakelley druvus kinestetika ThomasDOtto jasontsai sharpton jmeppley iSEEM
	Viruses manipulate the marine environment. [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 207-212. by Forest Rohwer, Rebecca Vega V. Thurber posted to no-tag by skembel on 2009-05-14 17:36:06 as along with 5 people and 1 group bmezmer hwright tomhebbron Thaverkamp djkt iSEEM
	A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1118-1124. by Tobias Rausch, Sergey Koren, Gennady Denisov, et al.David Weese, Anne-Katrin Emde, Andreas Doring, Knut Reinert posted to no-tag by skembel on 2009-04-30 21:01:49 as along with 19 people and 2 groups jfr azazello hzoltan cthachuk GustavoLacerda jasontsai n00c nuin dakelley Thaverkamp reyez TRHvidsten djkt hpaces APRegier pengchy natstreet druvus darian iSEEM Bioinformatics
	Phylogenetic Signals in DNA Composition: Limitations and Prospects [My Copy] Mol Biol Evol, Vol. 26, No. 5. (1 May 2009), pp. 1163-1169. by Jan Mrazek posted to no-tag by skembel on 2009-04-15 18:25:01 as along with 5 people and 1 group dakelley jmeppley djkt druvus nuin iSEEM
	Worlds within worlds: evolution of the vertebrate gut microbiota [My Copy] Nature Reviews Microbiology, Vol. 6, No. 10. (01 October 2008), pp. 776-788. by Ruth E. Ley, Catherine A. Lozupone, Micah Hamady, Rob Knight, Jeffrey I. Gordon posted to no-tag by skembel on 2009-04-03 21:50:28 as along with 3 people and 1 group jlgreen guhjy Zephyrus iSEEM
	Estimating the size of the bacterial pan-genome. [My Copy] Trends in genetics : TIG, Vol. 25, No. 3. (23 March 2009), pp. 107-110. by Pascal Lapierre, J. Peter Gogarten posted to no-tag by skembel on 2009-03-05 22:37:33 as along with 4 people and 1 group treangen azazello djkt nyyu iSEEM
	RAMI, a tool for identification and characterization of phylogenetic clusters in microbial communities [My Copy] Bioinformatics (17 February 2009), btp051. by Thomas Pommier, Bjorn Canback, Per Lundberg, Ake Hagstrom, Anders Tunlid posted to no-tag by skembel on 2009-02-18 18:25:20 as along with 4 people and 2 groups elbrodie hpaces sriesenfeld djkt phylocom iSEEM
	A core gut microbiome in obese and lean twins [My Copy] Nature (30 November 2008) by Peter J. Turnbaugh, Micah Hamady, Tanya Yatsunenko, et al.Brandi L. Cantarel, Alexis Duncan, Ruth E. Ley, Mitchell L. Sogin, William J. Jones, Bruce A. Roe, Jason P. Affourtit, Michael Egholm, Bernard Henrissat, Andrew C. Heath, Rob Knight, Jeffrey I. Gordon posted to no-tag by skembel on 2009-01-29 22:03:30 as along with 10 people and 2 groups jmeppley Thaverkamp azazello idoerg slevy03 booker djkt jbhiatt Zephyrus guhjy Microbial-Ecology iSEEM
	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050. by A. Siepel, G. Bejerano, J. S. Pedersen, et al.A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, G. M. Weinstock, R. K. Wilson, R. A. Gibbs, W. J. Kent, W. Miller, D. Haussler posted to no-tag by skembel on 2009-01-27 19:03:39 as along with 20 people and 4 groups thegoose2 farhat alessandroparini tharris bpb aprasad balajis eckart_bindewald indigoviolet brant pradiptaray adepace djkt olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
	A hierarchical model for incomplete alignments in phylogenetic inference [My Copy] Bioinformatics, Vol. 25, No. 5. (1 March 2009), pp. 592-598. by Fuxia Cheng, Stefanie Hartmann, Mayetri Gupta, Joseph G. Ibrahim, Todd J. Vision posted to no-tag by skembel on 2009-01-22 00:25:40 as along with 7 people and 1 group nuin druvus djkt mhamada jmeppley sriesenfeld jameswasmuth iSEEM
	Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic [My Copy] Nature (26 November 2008) by Hélène Agogu￩, Maaike Brink, Julie Dinasquet, Gerhard J. Herndl posted to no-tag by skembel on 2008-12-13 17:13:19 as along with 3 people and 2 groups djkt kinestetika neils iSEEM microbiology_nijmegen
	A Comparison of Phylogenetic Network Methods Using Computer Simulation [My Copy] PLoS ONE, Vol. 3, No. 4. (April 2008), e1913. by Steven M. Woolley, David Posada, Keith A. Crandall posted to no-tag by skembel on 2008-11-24 21:34:05 as along with 2 people and 2 groups fridab jlgreen iSEEM Green Lab

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diversity	46
phylogenetics	42
metagenomics	40
microbial	32
methods	28
phylodiversity	20
communityecology	15
genomics	14
microbiome	13
pyrosequencing	12
comparativemethods	10
microbes	8
neutral	7
454	7
roots	6
alignment	6
16s	6
diversification	6
software	6
entropy	6
betadiversity	6
selection	6
functionaldiversity	5
phylogenomics	5
phylotyping	5
ocean	5
supertrees	4
phylogeny	4
viral	4
ecology	4
gos	4
traits	4
supermatrix	4
bayesian	3
foraging	3
r	3
adaptation	3
niche	3
roc	3
leaves	3
bacteria	3
biogeography	3
fungi	3
cf	2
simulation	2
abundance	2
ants	2
gut	2
otu	2
ml	2
evolution	2
endophytes	2
nextgensequencing	2
competition	2
community	2
profiling	2
coalescent	2
species	2
genetics	2
air	2
genomes	2
kmer	1
megatree	1
shannon	1
shewanella	1
mutualisms	1
diatoms	1
bci	1
sampling	1
proteomics	1
phyllosphere	1
rarity	1
profiles	1
functional_characterization	1
clustering	1
depth	1
annotation	1
schizophrenia	1
metatranscriptomics	1
popgen	1
funding	1
bats	1
belowground	1
data	1
climatechange	1
barcode	1
angiosperms	1
comparative_methods	1
archaea	1
pd	1
bacterial	1
mp	1
metacommunity	1
rna	1
ph	1
wow	1
partitioning	1
incongruence	1
metabolic	1
ltt	1
symbioses	1
sequencing	1
copy_number	1
mcmc	1
coevolution	1
transcriptome	1
greedyalgorithm	1
orthologs	1
outofafrica	1
ess	1
cystic_fibrosis	1
grants	1
pseudomonas	1
operon	1
community_structure	1
spatial	1
bootstrap	1
missingdata	1
marine	1
dispersal	1
community_ecology	1
drift	1
speciation	1
systems_biology	1
nserc	1
phenology	1
plants	1
shotgun_sequencing	1
otus	1
underground	1
gene_prediction	1
tag	1
sanger	1
hpc	1
cogs	1
treeoflife	1
binning	1
phylochip	1
bioinformatics	1
ffp	1
teaching	1

skembel's no-tag [26 articles] Export

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