skhadar's library 39 articles Export

	On ontologies for biologists: the Gene Ontology--untangling the web. [My Copy] Novartis Found Symp, Vol. 247 (2002) by M. Ashburner, S. Lewis posted to bioinformatics database geneontology go by skhadar on 2008-05-28 09:36:40 as along with 2 people kshameer ziquje
	COILCHECK: An Interactive Server for the Analysis of Interface Regions in Coiled Coils [My Copy] Protein and Peptide Letters, Vol. 15, No. 1. (January 2008), pp. 33-38. by Sowdhamini, R., Alva, V., Syamala Devi, D. P. posted to algorithm bioinformatics server web by skhadar on 2008-03-13 17:50:36 as
	The developmental genetics of homology [My Copy] Nature Reviews Genetics, Vol. 8, No. 6. (08 May 2007), pp. 473-479. by Günter P. Wagner posted to genome homology by skhadar on 2008-02-27 08:12:48 as along with 5 people and 2 groups biomcgary jbsaltz balicea dchughes zwang G4ID Genetics-of-Gambling
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to no-tag by skhadar on 2008-02-27 07:06:50 as along with 26 people and 2 groups ludaesch jsatkosk kiekyon Thaverkamp Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley chad_davis rvosa indigoviolet dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab FAB-lab
	Evolutionary Genomics: Transdomain Gene Transfers [My Copy] Current Biology, Vol. 17, No. 21. (6 November 2007), pp. R935-R936. by Seth R. Bordenstein posted to gene_transfer genome genome_informatics protein_domain by skhadar on 2008-02-27 07:05:41 as along with 4 people and 1 group operon mblwhoi zwang hpaces LabDros
	Common sense for our genomes [My Copy] Nature, Vol. 449, No. 7164. (18 October 2007), pp. 783-784. by Steven E. Brenner posted to bi by skhadar on 2008-02-27 07:02:38 as along with 9 people dchughes dullhunk wenhan jasonbobe ibuch farhat barriot psique hpaces
	The Global Landscape of Sequence Diversity [My Copy] Genome Biology, Vol. 8 (08 November 2007), R238. by Jose M. Peregrin-Alvarez, John Parkinson posted to bioinformatics homology sequence_analysis by skhadar on 2008-02-27 07:02:13 as along with 5 people shung gpalidwor cjeans hpaces ale
	An efficient algorithm for large-scale detection of protein families [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 April 2002), pp. 1575-1584. by A. J. Enright, S. Van Dongen, C. A. Ouzounis posted to algorithm analysis bioinformatics protein_family sequence_analysis by skhadar on 2008-02-27 07:01:20 as along with 22 people and 2 groups jperkins calderonv nedwards dakelley druvus treangen carlk cgaugain johanviklund chad_davis camster operon knaseanka indigoviolet nirfriedman dgront entropy gcalda GustavoLacerda hpaces RebeccaHamer Borelli dbk-lab EisenLab
	Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 1. (1 January 2007), pp. 127-128. by Ivica Letunic, Peer Bork posted to phyloinformatics by skhadar on 2008-02-27 07:00:20 as along with 6 people and 2 groups pablocarb aramata guhjy marcius hpaces gjuggler BioinfoCIPF SGU-CIPF
	Predicting protein function from sequence and structure. [My Copy] Nature reviews. Molecular cell biology, Vol. 8, No. 12. (December 2007), pp. 995-1005. by D. Lee, O. Redfern, C. Orengo posted to bioinformatics sequence_analysis structure_analysis by skhadar on 2008-02-27 06:59:48 as along with 12 people and 1 group michaelbarton smpraveena MarcoAlvarez neils cjeans zwang Evangelia hpaces Ema renatomilani kluck janasont MuraLab
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted to bioinformatics phyloinformatics sequence_analysis by skhadar on 2008-02-27 06:58:55 as along with 12 people and 1 group martainn balicea zwang sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
	Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e237. by Juan A. Ranea, Corin Yeats, Alastair Grant, Christine A. Orengo posted to algorithm analysis bioinformatics phyloinformatics by skhadar on 2008-02-27 06:57:51 as along with 5 people and 1 group marti eckart_bindewald zwang asddd hpaces Orengo Group functional genomics watchlist
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted to algorithm bioinformatics msa by skhadar on 2008-02-27 06:56:54 as along with 9 people and 1 group BioNica treangen natstreet druvus giovenko agustinarce sobolevnrm hpaces mingzhi baker-group
	Comparative analysis of the complete genome sequence of the plant growth–promoting bacterium Bacillus amyloliquefaciens FZB42 [My Copy] Nature Biotechnology, Vol. 25, No. 9. (19 August 2007), pp. 1007-1014. by Xiao H. Chen, Alexandra Koumoutsi, Romy Scholz, et al.Andreas Eisenreich, Kathrin Schneider, Isabelle Heinemeyer, Burkhard Morgenstern, Björn Voss, Wolfgang R. Hess, Oleg Reva, Helmut Junge, Birgit Voigt, Peter R. Jungblut, Joachim Vater, Roderich Süssmuth, Heiko Liesegang, Axel Strittmatter, Gerhard Gottschalk, Rainer Borriss posted to analysis bioinformatics genome_informatics by skhadar on 2008-02-27 06:56:12 as along with 1 person hpaces
	The ENCODE (ENCyclopedia Of DNA Elements) Project. [My Copy] Science (New York, N.Y.), Vol. 306, No. 5696. (22 October 2004), pp. 636-640. by E. Encode posted to analysis bioinformatics database diseases genome genome_informatics by skhadar on 2008-02-27 06:55:24 as along with 13 people and 1 group timhubbard polivares ilyashl raistrick setar balajis qfwills djkt frohike JeffR100 olympos hpaces siebert Bioinformatics
	Chaos game representation for comparison of whole genomes [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Jijoy Joseph, Roschen Sasikumar posted to bioinformatics cgr machinelearning by skhadar on 2008-02-27 06:54:26 as along with 2 people operon hpaces
	The Diploid Genome Sequence of an Individual Human [My Copy] PLoS Biol, Vol. 5, No. 10. (4 September 2007), e254. by Samuel Levy, Granger Sutton, Pauline C. Ng, et al.Lars Feuk, Aaron L. Halpern, Brian P. Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F. Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R. MacDonald, Andy W. Pang, Mary Shago, Timothy B. Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A. Kravitz, Dana A. Busam, Karen Y. Beeson, Tina C. McIntosh, Karin A. Remington, Josep F. Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E. Frazier, Stephen W. Scherer, Robert L. Strausberg, J. Craig Venter posted to bioinformatics genome infroamtics by skhadar on 2008-02-27 06:53:53 as along with 30 people and 1 group n00c jgill pachorip Scis0000002 daforerog jessopher psique dakelley noushin jo_davies frohike adijr Neeperando operon carlblesius bpb balicea dullhunk djkt jackjackjjj ramensky massivemayhem jasonbobe PredictER lp2 cabbagezs xingxu hpaces maburkitt nhp Bioinformatics
	HARMONY: a server for the assessment of protein structures. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by G. Pugalenthi, K. Shameer, N. Srinivasan, R. Sowdhamini posted to algorithm bioinformatics protein server structure web by skhadar on 2007-11-28 12:09:18 as along with 4 people viktor21614 bicko wouterboomsma wilbur
	Systematic discovery of in vivo phosphorylation networks. [My Copy] Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426. by Rune Linding, Lars Juhl J. Jensen, Gerard J. Ostheimer, et al.Marcel A. van Vugt, Claus Jørgensen, Ioana M. Miron, Francesca Diella, Karen Colwill, Lorne Taylor, Kelly Elder, Pavel Metalnikov, Vivian Nguyen, Adrian Pasculescu, Jing Jin, Jin Gyoon G. Park, Leona D. Samson, James R. Woodgett, Robert B. Russell, Peer Bork, Michael B. Yaffe, Tony Pawson posted to phosphatase protein proteinprotein protein-protein-interaction by skhadar on 2007-10-30 11:48:11 as along with 21 people and 2 groups rsaito jaimie nzm nedwards MatthiasReimann ptrobajo guhjy julius zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen Evangelia renatomilani carlk daed chad_davis bouncingbudha SysbioMPI-TCells Durbin group
	3D domain swapping: As domains continue to swap [My Copy] Protein Sci, Vol. 11, No. 6. (1 June 2002), pp. 1285-1299. by Yanshun Liu, David Eisenberg posted to 3ddomainswapping domainswapping protein by skhadar on 2007-10-30 08:47:02 as along with 4 people jdoconnell zdai tny dgront
	Biopython: Python tools for computational biology [My Copy] ACM SIGBIO Newsletter, Vol. 20, No. 2. (2000), pp. 15-19. by B. Chapman, J. Chang posted to no-tag by skhadar on 2007-10-29 13:19:35 as along with 1 person noby
	Working with Strings and Substrings [My Copy] by Dhyatt@thor posted to perl programming by skhadar on 2007-08-30 09:57:29 as
	miRNomics—The bioinformatics of microRNA genes [My Copy] Biochemical and Biophysical Research Communications, Vol. 363, No. 1. (09 November 2007), pp. 6-11. by Z. Ghosh, J. Chakrabarti, B. Mallick posted to mirna rna by skhadar on 2007-08-25 17:51:53 as along with 9 people and 3 groups giovenko druvus jfr andersbj dchughes heliopais delenca maralena natstreet microRNA G4ID Genetics-of-Gambling
	PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes. [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3316-3317. by S. P. Gore, D. F. Burke, T. L. Blundell posted to algorithm protein structure by skhadar on 2007-08-25 17:51:15 as along with 4 people and 1 group bicko Einat massivemayhem medic0747 structural_bioinformatics
	Comparative protein modelling by satisfaction of spatial restraints. [My Copy] Journal of molecular biology, Vol. 234, No. 3. (5 December 1993), pp. 779-815. by A. Sali, T. L. Blundell posted to modelling protein by skhadar on 2007-08-25 17:24:22 as along with 16 people bmduggan pjcite newton1234 viktor21614 mijam dimka vavi bicko chad_davis ttjoseph dgront rabio massivemayhem medic0747 sebk granujilla
	An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins. [My Copy] Protein Sci, Vol. 4, No. 3. (March 1995), pp. 506-520. by R. Sowdhamini, T. L. Blundell posted to bioinformatics domain prediction protein-protein by skhadar on 2007-08-23 09:12:14 as along with 3 people RebeccaHamer dimka medic0747
	Prediction of functional sites by analysis of sequence and structure conservation. [My Copy] Protein Sci, Vol. 13, No. 4. (April 2004), pp. 884-892. by A. R. Panchenko, F. Kondrashov, S. Bryant posted to bioinformatics functional interaction interactions prediction sites by skhadar on 2007-08-17 07:49:55 as along with 5 people ramiro2k chrn sriram_s tanuja_rastogi Jporci
	Machine Learning and Its Applications to Biology [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007), e116. by Adi L. Tarca, Vincent J. Carey, Xue-Wen Chen, Roberto Romero, Sorin Drăghici posted to bioinformatics machinelearning by skhadar on 2007-07-25 12:28:54 as along with 14 people and 3 groups colm rwst winterschlaefer svozil aviad_work druvus giovenko Borelli julius cjeans asddd ciga nklee kmdaily Bioinformatics SysbioMPI-TCells Computational_Information_Geometry
	CARGO: a web portal to integrate customized biological information. [My Copy] Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007) by I. Cases, D. G. Pisano, E. Andres, et al.A. Carro, J. M. Fernández, G. Gómez-López, J. M. Rodriguez, J. F. Vera, A. Valencia, A. M. Rojas posted to bioinformatics database databases by skhadar on 2007-07-25 12:27:41 as along with 3 people guhjy jfr moborg
	RAMEDIS: The Rare Metabolic Diseases Database [My Copy] Applied Bioinformatics, Vol. 5, No. 2. (2006), pp. 115-118. by Topel, Thoralf, Hofestadt, et al. Ralf, Scheible, Dagmar, Trefz, Friedrich posted to database diseases metabolic rare by skhadar on 2007-07-25 09:04:38 as along with 1 person Scis0000002
	A more complete, complexed and structured interactome. [My Copy] Curr Opin Struct Biol (14 June 2007) by Damien Devos, Robert B. Russell posted to interactome by skhadar on 2007-07-25 07:46:13 as along with 4 people chad_davis balicea choonpeng ruvido
	Molecular dynamics simulations of tubulin structure and calculations of electrostatic properties of microtubules [My Copy] Mathematical and computer modelling (2005) by J. A. Tuszynski, J. A. Brown, E. Crawford, et al.E. J. Carpenter, M. L. A. Nip, J. M. Dixon, M. V. Sataric posted to dynamics molecular simulations by skhadar on 2007-07-25 07:45:00 as along with 1 person qwermish
	ACE2: A New Target for Prevention of Diabetic Nephropathy? [My Copy] J Am Soc Nephrol, Vol. 17, No. 11. (November 2006), pp. 2957-2959. by J. R. Ingelfinger posted to diabetics target by skhadar on 2007-07-25 07:44:30 as along with 2 people guhjy brainsman2000
	Operating Systems Design and Implementation (3rd Edition) (Prentice Hall Software Series) [My Copy] (04 January 2006) by Andrew S. Tanenbaum, Albert S. Woodhull posted to operating systems by skhadar on 2007-07-25 07:43:11 as along with 3 people and 2 groups lmorel sensorweb nmpountou TUCS-ES_Lab TUCS-KITARA_project
	KemaDom: a web server for domain prediction using kernel machine with local context. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by L. Chen, W. Wang, S. Ling, C. Jia, F. Wang posted to domain kernel machine prediction server web by skhadar on 2007-07-25 07:41:32 as along with 2 people and 2 groups marcius gulkur BioinfoCIPF SGU-CIPF
	Using bioinformatics and genome analysis for new therapeutic interventions. [My Copy] Mol Cancer Ther, Vol. 4, No. 10. (October 2005), pp. 1636-1643. by D. W. Mount, R. Pandey posted to analysis bioinformatics genome by skhadar on 2007-07-25 07:18:21 as along with 1 person Isabel
	Discovering disease-genes by topological features in human protein-protein interaction network [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2800-2805. by J. Xu, Y. Li posted to analysis genome interaction protein-protein by skhadar on 2007-07-25 07:17:43 as along with 4 people and 2 groups saket diamantis marcius ealloza BioinfoCIPF SGU-CIPF
	Protein–Protein Interactions More Conserved within Species than across Species [My Copy] PLoS computational biology, Vol. 2, No. 7. (21 July 2006), e79. by Sven Mika, Burkhard Rost posted to interactions proteinprotein by skhadar on 2007-07-25 06:53:31 as along with 7 people and 2 groups chica RebeccaHamer robfsouza jeremymiller chad_davis marcius dquest BioinfoCIPF SGU-CIPF
	Automated Querying of Genome Databases [My Copy] PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e1. by Peter Schattner posted to databases genome by skhadar on 2007-07-25 06:50:48 as along with 3 people mikaelhuss olympos kmdaily

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bioinformatics	18
genome	7
algorithm	6
analysis	6
protein	5
database	4
sequence_analysis	4
genome_informatics	3
phyloinformatics	3
prediction	3
server	3
web	3
databases	2
diseases	2
domain	2
homology	2
interaction	2
interactions	2
machinelearning	2
proteinprotein	2
protein-protein	2
structure	2
3ddomainswapping	1
bi	1
cgr	1
diabetics	1
domainswapping	1
dynamics	1
functional	1
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gene_transfer	1
go	1
infroamtics	1
interactome	1
kernel	1
machine	1
metabolic	1
mirna	1
modelling	1
molecular	1
msa	1
operating	1
perl	1
phosphatase	1
programming	1
protein_domain	1
protein_family	1
protein-protein-interaction	1
rare	1
rna	1
simulations	1
sites	1
structure_analysis	1
systems	1
target	1

skhadar's library 39 articles Export

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