skywalkerus02's library 27 articles Export

	The role of dynamic conformational ensembles in biomolecular recognition [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (10 October 2009), pp. 789-796. by David D. Boehr, Ruth Nussinov, Peter E. Wright posted to population_shift biomolecular-recognition allostery by skywalkerus02 on 2009-11-14 04:47:05 as along with 3 people higueruelo ubcg08l paulschlesinger
	Effect of Macromolecular Crowding on Protein Folding Dynamics at the Secondary Structure Level [My Copy] Journal of Molecular Biology, Vol. 393, No. 1. (16 October 2009), pp. 227-236. by Smita Mukherjee, Matthias M. Waegele, Pramit Chowdhury, Lin Guo, Feng Gai posted to protein-folding macromolecular-crowding cellular_environment by skywalkerus02 on 2009-10-13 17:45:18 as
	High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (9 October 2009), e1000528. by Noriaki Okimoto, Noriyuki Futatsugi, Hideyoshi Fuji, et al.Atsushi Suenaga, Gentaro Morimoto, Ryoko Yanai, Yousuke Ohno, Tetsu Narumi, Makoto Taiji posted to optimization molecular_dynamics_simulations md_simulations md drug_discovery drug docking by skywalkerus02 on 2009-10-12 07:05:35 as along with 5 people and 1 group ibuch klexa kentsis reyez barry McCammon
	Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (20 February 2009), e1000293. by Michael D. Daily, Jeffrey J. Gray posted to protein_motions allostery by skywalkerus02 on 2009-10-10 09:18:21 as along with 9 people and 3 groups anuragsethi sobolevnrm pablocarb AngelB eallain allmensch gane5h apaydin barry baker-group structural_bioinformatics McCammon
	Binding induced conformational changes of proteins correlate with their intrinsic fluctuations: A case study of antibodies [My Copy] BMC Structural Biology, Vol. 7 (17 May 2007), 31. by Ozlem Keskin posted to induced_conformational_changes fluctuations conformational_changes conformational-fluctuations antibodies allostery by skywalkerus02 on 2009-10-10 09:16:56 as along with 4 people and 1 group sobolevnrm aqeel choonpeng medic0747 baker-group
	Probing the Flexibility of Large Conformational Changes in Protein Structures through Local Perturbations [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (3 April 2009), e1000343. by Bosco K. Ho, David A. Agard posted to perturbation_method molecular_dynamics md conformational_changes allostery by skywalkerus02 on 2009-10-07 06:29:23 as along with 5 people and 3 groups dimka operon sobolevnrm barry bourby baker-group structural_bioinformatics McCammon
	Structural biology: Protein dynamics from disorder [My Copy] Nature, Vol. 459, No. 7250. (24 June 2009), pp. 1063-1064. by Joel R. Tolman posted to protein_dynamics disorder by skywalkerus02 on 2009-10-06 12:59:33 as along with 5 people anna_yershova niallhaslam reyez pablocarb yse
	Relating protein conformational changes to packing efficiency and disorder. [My Copy] Protein science : a publication of the Protein Society, Vol. 18, No. 6. (June 2009), pp. 1230-1240. by N. Bhardwaj, M. Gerstein posted to protein_conformation disorder conformational_changes by skywalkerus02 on 2009-10-06 12:54:12 as along with 3 people and 2 groups klexa sobolevnrm barry structural_bioinformatics McCammon
	Protein folding forces [My Copy] Journal of Theoretical Biology, Vol. 251, No. 2. (21 March 2008), pp. 331-347. by B. Nolting, N. Salimi, U. Guth posted to protein-folding forces by skywalkerus02 on 2009-10-06 08:03:06 as along with 1 person choonpeng
	Conservation of Side-Chain Dynamics Within a Protein Family [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Anthony B. Law, Ernesto J. Fuentes, Andrew L. Lee posted to protein_family protein_dynamics flexibility by skywalkerus02 on 2009-10-06 05:53:15 as along with 4 people and 3 groups anuragsethi pablocarb barry sobolevnrm structural_bioinformatics McCammon baker-group
	Computational Methods for Predicting Sites of Functionally Important Dynamics [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Adam D. Schuyler, Heather A. Carlson, Eva L. Feldman posted to function_of_proteins dynamic_control correlated_motion allostery by skywalkerus02 on 2009-10-06 05:52:11 as along with 5 people and 1 group agrossfield ubcg08l higueruelo barry sobolevnrm baker-group
	Aneuploidy: Cancer's Fatal Flaw? [My Copy] Cancer Res, Vol. 69, No. 13. (1 July 2009), pp. 5289-5291. by Bret R. Williams, Angelika Amon posted to cancer aneuploidy by skywalkerus02 on 2009-10-04 18:01:31 as
	Fold space unlimited [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (08 June 2009), pp. 312-320. by Manfred J. Sippl posted to protein_structure fold-space by skywalkerus02 on 2009-10-04 17:59:11 as along with 3 people and 1 group dfdong pansapiens davidalee Orengo Group Journal Picks
	Nothing about protein structure classification makes sense except in the light of evolution [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (24 June 2009), pp. 329-334. by Ruben E. Valas, Song Yang, Philip E. Bourne posted to sequence_relationships protein_structures protein_structure_classification evolutionary_perspective by skywalkerus02 on 2009-10-04 17:57:56 as along with 13 people and 3 groups dfdong mkotlyar dgront nyyu robfsouza apaydin barry coela Zephyrus sobolevnrm zwang friendpine paulschlesinger structural_bioinformatics R.E.A.D baker-group
	Discrete–continuous duality of protein structure space [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (29 June 2009), pp. 321-328. by Ruslan I. Sadreyev, Bong-Hyun Kim, Nick V. Grishin posted to protein_universe protein_structure protein_space by skywalkerus02 on 2009-10-04 17:56:48 as along with 4 people and 1 group martainn philomorph davidalee paulschlesinger Orengo Group Journal Picks
	Protein thermodynamic structure. [My Copy] IUBMB life, Vol. 61, No. 6. (June 2009), pp. 600-606. by Qinyi Zhao posted to thermodynamic_structure protein-folding by skywalkerus02 on 2009-10-04 17:55:28 as along with 1 person saunders
	An expanding arsenal of experimental methods yields an explosion of insights into protein folding mechanisms. [My Copy] Nature structural & molecular biology, Vol. 16, No. 6. (03 June 2009), pp. 582-588. by Alice I. Bartlett, Sheena E. Radford posted to protein-folding by skywalkerus02 on 2009-10-04 17:54:23 as along with 3 people saunders siggi84 melo_mcr
	Converging concepts of protein folding in vitro and in vivo [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 6. (03 June 2009), pp. 574-581. by F. Ulrich Hartl, Manajit Hayer-Hartl posted to protein-folding in-vivo in-vitro by skywalkerus02 on 2009-10-04 17:52:47 as along with 6 people bratwurst siggi84 scampos melo_mcr reyez RamuAnandakrishnan
	Cellular mechanisms of membrane protein folding [My Copy] Nat Struct Mol Biol, Vol. 16, No. 16. (03 June 2009), pp. 606-612. by William R. Skach posted to protein-folding by skywalkerus02 on 2009-10-04 17:51:08 as along with 2 people paulschlesinger siggi84
	Protein folding simulations: From coarse-grained model to all-atom model [My Copy] IUBMB Life, Vol. 61, No. 6. (2009), pp. 627-643. by Jian Zhang, Wenfei Li, Jun Wang, et al.Meng Qin, Lei Wu, Zhiqiang Yan, Weixin Xu, Guanghong Zuo, Wei Wang posted to protein-folding md_simulations by skywalkerus02 on 2009-10-04 17:49:27 as
	Structural determinants of protein folding. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 66, No. 14. (1 July 2009), pp. 2341-2361. by Tse Siang S. Kang, R. Manjunatha Kini posted to structural_biology review protein-folding by skywalkerus02 on 2009-10-04 17:35:29 as along with 1 person saunders
	Peptides as protein binding site mimetics [My Copy] Current Opinion in Chemical Biology, Vol. 12, No. 6. (17 December 2008), pp. 707-713. by J. Eichler posted to rt protein_structure_and_function mimicry ligand_interactions biomedical_applications binding_site by skywalkerus02 on 2009-10-03 18:22:08 as along with 1 person higueruelo
	Dissecting the energetics of an antibody-antigen interface by alanine shaving and molecular grafting [My Copy] Protein Science, Vol. 3, No. 12. (1994), pp. 2351-2357. by Lei Jin, James A. Wells posted to vaccines graft epitope binding_affinity antibody_antigen by skywalkerus02 on 2009-10-03 17:56:41 as
	Mapping to completeness and transplantation of a group-specific, discontinuous, neutralizing epitope in the envelope protein of dengue virus [My Copy] J Gen Virol, Vol. 88, No. 9. (1 September 2007), pp. 2387-2397. by Olesia Lisova, Florence Hardy, Vincent Petit, Hugues Bedouelle posted to rt vaccines trasplantation epitope binding_energy beta_sheets antibody by skywalkerus02 on 2009-10-03 17:53:19 as
	β-Hairpin Peptidomimetics: Design, Structures and Biological Activities [My Copy] Accounts of Chemical Research, Vol. 41, No. 10. (21 October 2008), pp. 1278-1288. by John A. Robinson posted to rt transplanting peptides_and_proteins pems molecular_recognition_events hairpin_loop epitopes beta-hairpin by skywalkerus02 on 2009-10-03 17:12:45 as along with 1 person higueruelo
	Active and inactive state structures of unliganded <I>Lactobacillus casei</I> allosteric <FONT SIZE='-2'>L</FONT>-lactate dehydrogenase [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Kazuhito Arai, Toshihiro Ishimitsu, Shinya Fushinobu, Hiroyuki Uchikoba, Hiroshi Matsuzawa, Hayao Taguchi posted to salt_bridges allostery by skywalkerus02 on 2009-10-02 06:50:37 as
	Scaffolds: interaction platforms for cellular signalling circuits [My Copy] Trends in Cell Biology, Vol. 19, No. 8. (1 August 2009), pp. 364-374. by András Zeke, Melinda Lukács, Wendell A. Lim, Attila Reményi posted to signalling cellular by skywalkerus02 on 2009-10-01 08:15:25 as along with 1 person guhjy

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protein-folding	8
allostery	6
conformational_changes	3
rt	3
disorder	2
epitope	2
md	2
md_simulations	2
protein_dynamics	2
protein_structure	2
vaccines	2
aneuploidy	1
antibodies	1
antibody	1
antibody_antigen	1
beta-hairpin	1
beta_sheets	1
binding_affinity	1
binding_energy	1
binding_site	1
biomedical_applications	1
biomolecular-recognition	1
cancer	1
cellular	1
cellular_environment	1
conformational-fluctuations	1
correlated_motion	1
docking	1
drug	1
drug_discovery	1
dynamic_control	1
epitopes	1
evolutionary_perspective	1
flexibility	1
fluctuations	1
fold-space	1
forces	1
function_of_proteins	1
graft	1
hairpin_loop	1
induced_conformational_changes	1
in-vitro	1
in-vivo	1
ligand_interactions	1
macromolecular-crowding	1
mimicry	1
molecular_dynamics	1
molecular_dynamics_simulations	1
molecular_recognition_events	1
optimization	1
pems	1
peptides_and_proteins	1
perturbation_method	1
population_shift	1
protein_conformation	1
protein_family	1
protein_motions	1
protein_space	1
protein_structure_and_function	1
protein_structure_classification	1
protein_structures	1
protein_universe	1
review	1
salt_bridges	1
sequence_relationships	1
signalling	1
structural_biology	1
thermodynamic_structure	1
transplanting	1
trasplantation	1

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