smiddha's library 26 articles Export

	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. [My Copy] Nature biotechnology, Vol. 27, No. 1. (04 January 2009), pp. 66-75. by Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, et al.Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein posted to chipseq peakseq sequencing solexa tfbs by smiddha on 2009-04-01 20:50:27 as along with 18 people and 1 group hzoltan fpattyn gdb huali ewilban1 fenghezi jfr bertelsen JeremyZucker cassj inesdesantiago dakelley ghattem abizar polivares idonaldson WanderingAengus guhjy SIMR bioinformatics
	PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data [My Copy] Genome Biology, Vol. 10, No. 2. (23 February 2009), R23. by Jan Korbel, Alexej Abyzov, Xinmeng Mu, et al.Nicholas Carriero, Philip Cayting, Zhengdong Zhang, Michael Snyder, Mark Gerstein posted to paired pemer sequencing solexa structural by smiddha on 2009-04-01 20:46:39 as along with 11 people orzenil adthrasher jessopher jrvalcourt dakelley Neeperando APRegier natstreet djkt poschm druvus
	Genome Projector: zoomable genome map with multiple views. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Kazuharu Arakawa, Satoshi Tamaki, Nobuaki Kono, et al.Nobuhiro Kido, Keita Ikegami, Ryu Ogawa, Masaru Tomita posted to genome googlemaps gui by smiddha on 2009-02-11 19:14:29 as along with 11 people dokky jfr idoerg guhjy daforerog nuin natstreet druvus behindtherabbit coela neils
	Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. [My Copy] Nature genetics, Vol. 40, No. 6. (27 June 2008), pp. 722-729. by Peter J. Campbell, Philip J. Stephens, Erin D. Pleasance, et al.Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A. Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W. Teague, Andrew Menzies, Ian Goodhead, Daniel J. Turner, Christopher M. Clee, Michael A. Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E. Hurles, Paul A. Edwards, Graham R. Bignell, Michael R. Stratton, P. Andrew Futreal posted to maq sequencing solexa structural by smiddha on 2009-02-02 22:08:06 as along with 12 people chvlyl dakelley APRegier myzhang jessopher frohike xingxu daed matthewsuderman jfr caseybrown chrisamiller
	Supplement1: Mapping and sequencing of structural variation from eight human genomes - http://www.nature.com/nature/journal/v453/n7191/full/nature06862.html [My Copy] posted to sequencing solexa ssahasnp structural by smiddha on 2009-02-02 22:04:37 as
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to solexa ssahasnp structural by smiddha on 2009-02-02 21:58:23 as along with 35 people and 2 groups hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome [My Copy] BMC Genomics, Vol. 9, No. Suppl 1. (2008) by Guohua Wang, Xin Wang, Yadong Wang, et al.Jack Yang, Lang Li, Kenneth Nephew, Howard Edenberg, Feng Zhou, Yunlong Liu posted to microarray mirna tfbs by smiddha on 2009-01-28 21:35:08 as along with 1 person and 1 group heliopais microRNA
	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 829-834. by Anton Valouev, David S. Johnson, Andreas Sundquist, et al.Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M. Myers, Arend Sidow posted to chipseq quest solexa by smiddha on 2009-01-27 20:23:04 as along with 19 people and 1 group jwfoley ewilban1 nklee bertelsen stajich clearbluespring WanderingAengus polivares ptrobajo mdperry idonaldson gdb megraw kengg alhufton guhjy kjglennie bryankr maximilianh Mycology
	Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond [My Copy] Current Opinion in Plant Biology, Vol. 12, No. 2. (20 April 2009), pp. 107-118. by Ryan Lister, Brian D. Gregory, Joseph R. Ecker posted to nextgen plant sequencing by smiddha on 2009-01-25 07:22:25 as along with 4 people mlog debasis Vincent_Rouilly guhjy
	The impact of microRNAs and alternative splicing in pharmacogenomics [My Copy] Pharmacogenomics J, Vol. 9, No. 1. (0000), pp. 1-13. by F. Passetti, C. G. Ferreira, F. F. Costa posted to microrna pharmacogenomics by smiddha on 2009-01-22 16:20:33 as along with 2 people mingzhi songpku
	Comparative genomics of Drosophila and human core promoters [My Copy] Genome Biology, Vol. 7 (07 July 2006), R53. by Peter C. Fitzgerald, David Sturgill, Andrey Shyakhtenko, Brian Oliver, Charles Vinson posted to core promoter by smiddha on 2007-04-17 18:22:51 as along with 5 people and 2 groups daveGerrard indigoviolet adepace himanshu17 uwe BergmanLab EisenLab
	Clustering of DNA Sequences in Human Promoters [My Copy] Genome Research, Vol. 14, No. 8. (1 August 2004), pp. 1562-1574. by Peter C. FitzGerald, Andrey Shlyakhtenko, Alain A. Mir, Charles Vinson posted to core promoter by smiddha on 2007-04-17 18:22:12 as along with 4 people rb_india nklee myrtilus ale
	Computational detection and location of transcription start sites in mammalian genomic DNA. [My Copy] Genome research, Vol. 12, No. 3. (1 March 2002), pp. 458-461. by T. A. Down, T. J. Hubbard posted to core promoter by smiddha on 2007-04-17 18:11:23 as along with 4 people timhubbard tonamswish olympos kmdaily
	Statistical analysis of over-represented words in human promoter sequences. [My Copy] Nucleic Acids Res, Vol. 32, No. 3. (2004), pp. 949-958. by L. Mariño-Ramírez, J. L. Spouge, G. C. Kanga, D. Landsman posted to core promoter by smiddha on 2007-04-17 18:09:31 as along with 2 people and 1 group kaspermunch xili03 Bioinformatics
	Scoring functions for transcription factor binding site prediction [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 84. by Markus Friberg, Peter von Rohr, Gaston Gonnet posted to core promoter by smiddha on 2007-04-17 04:34:44 as along with 3 people Dulce Baschl nklee
	Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by I. Abnizova, R. te Boekhorst, K. Walter, W. R. Gilks posted to core promoter by smiddha on 2007-04-17 04:28:41 as along with 1 person and 1 group indigoviolet EisenLab
	PEAKS: identification of regulatory motifs by their position in DNA sequences [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 243-244. by Bellora, Nicolas, Farre, Domenec, Mar Alba, M. posted to core promoter by smiddha on 2007-04-17 04:24:56 as
	Statistical analysis of over-represented words in human promoter sequences [My Copy] NAR by Leonardo Mariño-Ramírez, John L. Spouge, Gavin C. Kanga, David Landsman posted to core promoter by smiddha on 2007-04-17 04:21:57 as
	Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals [My Copy] Nature, Vol. aop, No. current. (27 February 2005) by Xiaohui Xie, Jun Lu, E. J. Kulbokas, et al.Todd R. Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S. Lander, Manolis Kellis posted to core promoter by smiddha on 2007-04-17 04:20:04 as along with 28 people and 4 groups Dulce wowalz maximilianh_otx hagechouchin443 sterovetta kieran101 snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother franklin oscarluoinau heliopais ale emptyhb maralena mariakmejia Bioinformatics EisenLab microRNA EBI-regulation
	An algorithm for finding signals of unknown length in DNA sequences [My Copy] Bioinformatics, Vol. 17, No. suppl_1. (1 June 2001), pp. S207-214. by Giulio Pavesi, Giancarlo Mauri, Graziano Pesole posted to core promoter by smiddha on 2007-04-17 04:00:09 as along with 6 people wowalz dquest xiaobeizhao nklee xili03 ep161302
	Discovery of novel transcription factor binding sites by statistical overrepresentation. [My Copy] Nucleic Acids Res, Vol. 30, No. 24. (15 December 2002), pp. 5549-5560. by S. Sinha, M. Tompa posted to core promoter by smiddha on 2007-04-17 03:59:03 as along with 11 people wowalz GustavoLacerda kaarsinogen dquest xiaobeizhao GeeSharpMinor xi03 xili03 ep161302 wenhan pradiptaray
	Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies1 [My Copy] Journal of Molecular Biology, Vol. 281, No. 5. (04 September 1998), pp. 827-842. by J. van Helden, B. André, J. Collado-Vides posted to core promoter by smiddha on 2007-04-17 03:58:19 as along with 6 people Dulce wowalz druvus dquest johncumbers ale
	Statistical tests to compare motif count exceptionalities [My Copy] BMC Bioinformatics, Vol. 8 (08 March 2007), 84. by Stephane Robin, Sophie Schbath, Vincent Vandewalle posted to core promoter by smiddha on 2007-04-17 03:56:51 as along with 4 people grahamc maralena aaronsmith quianominorleo
	DWE: Discriminating Word Enumerator [My Copy] Bioinformatics, Vol. 21, No. 1., 31. by Pavel Sumazin, Gengxin Chen, Naoya Hata, Andrew D. Smith, Theresa Zhang, Michael Q. Zhang posted to core promoter by smiddha on 2007-04-17 03:55:15 as
	Using local gene expression similarities to discover regulatory binding site modules [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (17 November 2006), 505. by Bartek Wilczynski, Torgeir Hvidsten, Andriy Kryshtafovych, Jerzy Tiuryn, Jan Komorowski, Krzysztof Fidelis posted to no-tag by smiddha on 2006-11-20 17:14:28 as along with 4 people TRHvidsten wowalz jfr dquest
	Analysis of promoter regions of co-expressed genes identified by microarray analysis [My Copy] BMC Bioinformatics, Vol. 7 by Srinivas Veerla, Mattias Höglund posted to coexpressed microarray promoter by smiddha on 2006-11-17 15:35:01 as

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promoter	15
core	14
solexa	6
sequencing	5
structural	4
chipseq	2
microarray	2
ssahasnp	2
tfbs	2
coexpressed	1
genome	1
googlemaps	1
gui	1
maq	1
microrna	1
mirna	1
nextgen	1
paired	1
peakseq	1
pemer	1
pharmacogenomics	1
plant	1
quest	1

smiddha's library 26 articles Export

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