Developmental Simulations with Cellerator Export

@inproceedings{Shapiro2001dsw, abstract = {We describe how to perform developmental simulations with Cellerator. Biochemical reactions, specified in Cellerator with a compact, arrow-based notation, are automatically translated into the appropriate ordinary differential equations. These reactions can be combined into modules, leading to a natural graph-based hierarchical implementation. We demonstrate how the paradigm of organisms-as-graphs can represent the basic features of developing tissue, and propose a variable-structure graph-based algorithm to describe simple developmental processes. In particular, we show how such a variable-structure system (VSS) can be implemented using a pre-packaged fixedstructure differential equation solver.}, author = {Shapiro, B. and Mjolsness, E.}, booktitle = {Second International Conference on Systems Biology}, citeulike-article-id = {832314}, day = {5}, keywords = {cellerator, cells, tissue\_modelling}, month = {November}, posted-at = {2006-09-06 12:39:59}, priority = {5}, title = {Developmental Simulations with Cellerator}, year = {2001} }

TY - CONF ID - Shapiro2001dsw L3 - citeulike-article-id:832314 N2 - We describe how to perform developmental simulations with Cellerator. Biochemical reactions, specified in Cellerator with a compact, arrow-based notation, are automatically translated into the appropriate ordinary differential equations. These reactions can be combined into modules, leading to a natural graph-based hierarchical implementation. We demonstrate how the paradigm of organisms-as-graphs can represent the basic features of developing tissue, and propose a variable-structure graph-based algorithm to describe simple developmental processes. In particular, we show how such a variable-structure system (VSS) can be implemented using a pre-packaged fixedstructure differential equation solver. TI - Developmental Simulations with Cellerator T2 - Second International Conference on Systems Biology KW - cellerator KW - cells KW - tissue_modelling AU - Shapiro, B AU - Mjolsness, E PY - 2001/11/05/7 ER -