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MSMExplorer: visualizing Markov state models for biomolecule folding simulations

by: Bryce Cronkite-Ratcliff, Vijay Pande
Bioinformatics, Vol. 29, No. 7. (01 April 2013), pp. 950-952, doi:10.1093/bioinformatics/btt051  Key: citeulike:12197690

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Abstract

Summary: Markov state models (MSMs) for the study of biomolecule folding simulations have emerged as a powerful tool for computational study of folding dynamics. MSMExplorer is a visualization application purpose-built to visualize these MSMs with an aim to increase the efficacy and reach of MSM science.


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