sobolevnrm's Brooks:BR [19 articles] Export

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	CHARMM: The biomolecular simulation program [My Copy] Journal of Computational Chemistry, Vol. 30, No. 10. (30 July 2009), pp. 1545-1614. by B. R. Brooks, C. L. Brooks, A. D. Mackerell, et al.L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York, M. Karplus posted to molecular_dynamics molecular_simulation by sobolevnrm on 2009-05-19 12:00:47 as along with 9 people and 1 group dgront rodrigofaccioli mmuecke medic0747 flbarroso jrperillaj xavierprat saravan dimka baker-group
	Self-guided Langevin dynamics study of regulatory interactions in NtrC. [My Copy] Proteins (26 March 2009) by Ana Damjanović, Bertrand E E. García-Moreno, Bernard R R. Brooks posted to electrostatics enhanced_sampling pka solvation by sobolevnrm on 2009-04-23 12:30:23 as along with 1 group baker-group
	Normal modes for large molecules with arbitrary link constraints in the mobile block Hessian approach [My Copy] The Journal of Chemical Physics, Vol. 130, No. 8. (2009), 084107. by A. Ghysels, D. Van Neck, B. R. Brooks, V. Van Speybroeck, M. Waroquier posted to molecular_simulation quasiharmonic_models by sobolevnrm on 2009-03-25 11:31:29 as along with 1 person and 1 group barry baker-group
	Using the isotropic periodic sum method to calculate long-range interactions of heterogeneous systems [My Copy] The Journal of Chemical Physics, Vol. 129, No. 15. (2008) by Xiongwu Wu, Bernard R. Brooks posted to electrostatics molecular_simulation by sobolevnrm on 2009-01-30 13:05:36 as along with 1 person and 1 group agrossfield baker-group
	Backbone relaxation coupled to the ionization of internal groups in proteins: A self-guided Langevin dynamics study [My Copy] Biophys. J. (18 July 2008), biophysj.108.130906. by Ana Damjanovic, Xiongwu Wu, Bertrand Garcia-Moreno, Bernard R. Brooks posted to pka protein_folding solvation by sobolevnrm on 2009-01-26 12:49:24 as along with 2 people and 2 groups jmccammon paulschlesinger baker-group McCammon
	Open Science Grid Study of the Coupling between Conformation and Water Content in the Interior of a Protein [My Copy] Journal of Chemical Information and Modeling, Vol. 48, No. 10. (27 October 2008), pp. 2021-2029. by Ana Damjanović, Benjamin T. Miller, Torre J. Wenaus, Petar Maksimović, García-Moreno, Bernard R. Brooks posted to molecular_dynamics pka programming software solvation by sobolevnrm on 2008-12-28 15:34:46 as along with 1 group baker-group
	Multiscale methods for macromolecular simulations [My Copy] Current Opinion in Structural Biology In Carbohydrates and glycoconjugates / Biophysical methods, Vol. 18, No. 5. (2008), pp. 630-640. by Paul Sherwood, Bernard R. Brooks, Mark S. P. Sansom posted to multiscale review molecular_simulation by sobolevnrm on 2008-10-09 13:03:54 as
	CHARMMing: A New, Flexible Web Portal for CHARMM [My Copy] Journal of Chemical Information and Modeling, No. 1549-9596. by Benjamin T. Miller, Rishi P. Singh, Jeffery B. Klauda, Milan Hodošček, Bernard R. Brooks, Lee H. Woodcock posted to software molecular_dynamics molecular_simulation by sobolevnrm on 2008-08-18 12:41:34 as
	Rotation of Lipids in Membranes: MD Simulation, 31P Spin-Lattice Relaxation, and Rigid-Body Dynamics [My Copy] Biophys. J. (11 January 2008), biophysj.107.121806. by Jeffrey B. Klauda, Mary F. Roberts, Alfred G. Redfield, Bernard R. Brooks, Richard W. Pastor posted to biomembranes molecular_simulation nmr by sobolevnrm on 2008-02-25 12:11:21 as along with 2 people and 1 group paulschlesinger sunhwan baker-group
	Protein conformational transitions explored by mixed elastic network models [My Copy] Proteins (in press) by W. Zheng, B. R. Brooks, G. Hummer posted to allostery quasiharmonic_models by sobolevnrm on 2007-07-07 23:53:48 as along with 1 group baker-group
	Long-Range Lennard-Jones and Electrostatic Interactions in Interfaces: Application of the Isotropic Periodic Sum Method [My Copy] Journal of Physical Chemistry B (in press) by J. B. Klauda, X. Wu, R. W. Pastor, B. R. Brooks posted to biomembranes electrostatics by sobolevnrm on 2007-05-25 14:37:07 as along with 1 group baker-group
	Dynamical motions of lipids and a finite size effect in simulations of bilayers [My Copy] Journal of Chemical Physics, Vol. 125 (2006) by J. B. Klauda, B. R. Brooks, R. W. Pastor posted to biomembranes molecular_dynamics by sobolevnrm on 2007-05-25 14:24:56 as along with 1 group baker-group
	Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 20. (2006), pp. 7664-9. by W. Zheng, B. R. Brooks, D. Thirumalai posted to allostery correlated_mutations quasiharmonic_models by sobolevnrm on 2007-05-25 14:22:46 as along with 1 group baker-group
	Probing the Local Dynamics of Nucleotide-Binding Pocket Coupled to the Global Dynamics: Myosin versus Kinesin [My Copy] Biophysical Journal, Vol. 89, No. 1. (2005), pp. 167-78. by W. Zheng, B. R. Brooks posted to quasiharmonic_models by sobolevnrm on 2007-05-25 14:18:04 as along with 1 group baker-group
	Normal-Modes-Based Prediction of Protein Conformational Changes Guided by Distance Constraints [My Copy] Biophysical Journal, Vol. 88, No. 5. (2005), pp. 3109-17. by W. Zheng, B. R. Brooks posted to quasiharmonic_models by sobolevnrm on 2007-05-25 14:17:41 as along with 1 group baker-group
	Network of Dynamically Important Residues in the Open/Closed Transition in Polymerases Is Strongly Conserved [My Copy] Structure, Vol. 13, No. 4. (2005), pp. 565-77. by W. Zheng, B. R. Brooks, S. Doniach, D. Thirumalai posted to allostery correlated_mutations quasiharmonic_models by sobolevnrm on 2007-05-25 14:17:40 as along with 1 group baker-group
	Removal of pressure and free energy artifacts in charged periodic systems via net charge corrections to the Ewald potential [My Copy] Journal of Chemical Physics, Vol. 108, No. 17. (1998), pp. 7070-84. by S. Bogusz, 3rd, B. R. Brooks posted to electrostatics molecular_dynamics by sobolevnrm on 2007-05-25 14:15:19 as along with 1 group baker-group
	Isotropic periodic sum: A method for the calculation of long-range interactions [My Copy] Journal of Chemical Physics, Vol. 22 (2004) by X. Wu, B. R. Brooks posted to electrostatics by sobolevnrm on 2007-05-25 14:15:05 as along with 1 group baker-group
	CHARMM: a program for macromolecular energy, minimization, and dynamics calculations [My Copy] Journal of Computational Chemistry, Vol. 4 (1983), pp. 187-217. by B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, M. Karplus posted to molecular_simulation software by sobolevnrm on 2007-05-25 13:43:48 as along with 1 group baker-group

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electrostatics	2011
solvation	1601
biomembranes	1500
statistical_mechanics	672
mathematics	621
bioinformatics	608
diffusion	527
molecular_dynamics	510
molecular_simulation	509
nucleic_acids	477
multiscale	409
quasiharmonic_models	336
structure	325
nanotech	287
allostery	269
review	207
protein_folding	202
beyond_mean_field	200
protein-protein_interactions	186
systems_biology	184
software	176
kinetics	168
acetylcholinesterase	167
protein-ligand_interactions	167
misc	151
biological_systems	150
experimental_methodology	147
thrombin	143
correlated_mutations	125
neuromuscular_junctions	121
pka	118
protein-nucleic_acid_interactions	116
sterols	111
drug_design	106
outer_hair_cells	103
metalloregulation	96
database	95
structure_prediction	91
cellular_mechanics	91
imaging	86
ontology	85
ccne	84
protein-membrane_interactions	83
quantum_mechanics	82
nonpolar	80
nerve_agents	78
nitric_oxide	74
career	71
visualization	69
emulsions	67
ligand-membrane_interactions	55
interfaces	55
cancer	51
nmr	50
protein_engineering	47
mechanics	44
integral_equation	41
clustering	39
free_energy	39
teaching	39
ion_channels	38
enhanced_sampling	35
ultrasound	33
perfluorocarbons	31
statistics	26
sccne	24
programming	22
pgdh	21
informatics	21
graph_theory	20
helicase	20
flexoelectric	18
fluid_mechanics	17
ribosome	17
quasiharmonic-models	15
drug_delivery	15
molecular-simulation	15
statistical-mechanics	13
gating	13
toxicity	13
geometry	13
nanotechnology	11
apbs	11
funding	10
pdb2pqr	9
energy_landscapes	8
beyond-mean-field	8
molecular-dynamics	8
nikr	8
cytoskeleton	7
electrochemistry	6
biomembrane	6
file-import-09-10-31	5
free-energy	5
protein-protein-interactions	5
protein-ligand-interactions	5
drug-design	4
graph-theory	4
docking	4
nitric-oxide	4
protein-folding	4
single_molecule	4
cholesterol	4
scattering	3
animals	3
optimization	3
humans	3
finite_element	3
ligand-membrane-interactions	3
thermodynamics	3
nucleic-acids	3
integral-equation	3
hydrodynamics	3
magnetism	2
models-chemical	2
proteins	2
virus	2
systems-biology	2
oxysterols	2
generalized_born	2
nanoparticles	2
neuroscience	2
fatty-acids-unsaturated	2
electric-double-layers	2
models-molecular	2
poisson-boltzmann-theory	2
finite-differences	2
energy-landscape	2
boundary_element	2
conformation	2
monte-carlo-simulations	2
red-blood-cell	2
protein-membrane-interactions	2
quantum-mechanics	2
computer-simulation	2
computational_geometry	2
biodistribution	2
ethics	2
phase-equilibria	1
parallel-plates	1
crystallography-x-ray	1
organic-solvents	1
signal-transduction	1
colloid-complex	1
lipid-metabolism	1
caveolae	1
static-electricity	1
gibbs-energies	1
model	1
lipid-droplet	1
rats	1
databases-protein	1
structure-prediction	1
protein-design	1
adipocytes	1
protein-binding	1
integrin-alphavbeta3	1
chemical-physics	1
choice-behavior	1
microtubule	1
red_blood_cell	1
hydrogen_bonds	1
electrolyte-solutions	1
dynamics-simulation	1
mice	1
thermodynamics-kinetic-theory	1
rab-gtp-binding-proteins	1
systems	1
density-functional-theory	1
interface	1
chains	1
biomedical-research	1
air-water-interface	1
electrolytes	1
alkalies	1
multivalent-ions	1
arthritis-experimental	1
information-dissemination	1
genomics	1
phosphatidylcholines	1
protein-allostery	1
protein-nucleic-acid-interactions	1
ligand-binding	1
text_mining	1
cytokine-receptor	1
oppositely-charged	1
finite-elements	1
inflammation	1
magnetic-resonance-spectroscopy	1
guidelines-as-topic	1
escherichia-coli	1
research-design	1
rab-gtpase	1
integral_equations	1
theoretical-physics	1
activity-coefficients	1
drug-delivery-systems	1
correlated-mutations	1
water	1
periodicals-as-topic	1
mentors	1
sodium-chloride	1
physical-chemistry	1
organelle-interaction	1
nuclear-magnetic-resonance-biomolecular	1
ionic-fluids	1
recent-progress	1
conserved-sequence	1
molecular-dynamics-simulations	1
protein-engineering	1
elasticity	1
anisotropy	1
time-factors	1
dielectric-properties	1
amino-acid-sequence	1
solutions	1
mathematical-physics	1
text-mining	1
multigrid	1
lipid-bilayers	1
emotions	1
energy-profile	1
protein-transport	1
electrolyte	1
potentiometric-titration	1
membrane-fusion	1
cations	1
amphoteric-surfaces	1
entropy	1
motility	1
computational-biology	1
salicylate	1
acetates	1
electrotsatics	1
molecular-conformation	1
double-layer-interactions	1
soft-matter	1
parameterization	1
effective-interaction-potentials	1
protein-structure-tertiary	1
fluorescence_quenching	1
finite-element	1
enzyme-stability	1
group-theory	1
sesquiterpenes	1
metabolomics	1
web	1
evolution-molecular	1
fatty-acids	1
configurational-entropy	1
aqueous-salt-solutions	1
protein-conformation	1
force-field	1
counterions	1
treatment-outcome	1
public-policy	1
efficient-generation	1
cyclohexanes	1
algorithms	1
enhanced-sampling	1
neovascularization-pathologic	1
career-choice	1
adenosine-monophosphate	1
conformational-flexibility	1
colloids	1
am1-bcc-model	1
inversion	1
organelle-size	1
solvents	1
earth-metal-ions	1
peer-review-research	1
membrane-microdomains	1
amino-acids	1
policy	1
counterion-condensation	1
lipids	1
organelles	1
condensation	1
serine-endopeptidases	1
mutual-information	1
flexoelectricity	1
annealed-polyelectrolytes	1
atomic-nuclear-physics	1
ionizable-groups	1
electric-double-layer	1
education-graduate	1

sobolevnrm's Brooks:BR [19 articles] Export

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