sobolevnrm's Feig:M [23 articles] Export Sort

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	CHARMM: The biomolecular simulation program [My Copy] Journal of Computational Chemistry, Vol. 30, No. 10. (30 July 2009), pp. 1545-1614. by B. R. Brooks, C. L. Brooks, A. D. Mackerell, et al.L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York, M. Karplus posted to molecular_dynamics molecular_simulation by sobolevnrm on 2009-05-19 12:00:47 as along with 10 people and 1 group ckmyo dgront rodrigofaccioli mmuecke medic0747 flbarroso jrperillaj xavierprat saravan dimka baker-group
	Chapter 6 Implicit Solvent Simulations of Biomolecules in Cellular Environments [My Copy] Annual Reports in Computational Chemistry, Vol. 4 (2008), pp. 107-121. by M. Feig, S. Tanizaki, M. Sayadi posted to biomembranes electrostatics solvation by sobolevnrm on 2009-02-18 12:33:37 as along with 2 people and 2 groups A_Coletta_Thesis flbarroso Structural Biology Group TorVergata baker-group
	High order matched interface and boundary method for elliptic equations with discontinuous coefficients and singular sources [My Copy] Journal of Computational Physics, Vol. 213, No. 1. (20 March 2006), pp. 1-30. by Y. C. Zhou, Shan Zhao, Michael Feig, G. W. Wei posted to electrostatics mathematics by sobolevnrm on 2008-07-01 02:37:16 as along with 1 group baker-group
	Modeling high-resolution hydration patterns in correlation with DNA sequence and conformation [My Copy] Journal of Molecular Biology, Vol. 286, No. 4. (5 March 1999), pp. 1075-1095. by Michael Feig, Montgomery B. Pettitt posted to electrostatics nucleic_acids solvation by sobolevnrm on 2008-04-25 15:00:38 as along with 1 group baker-group
	A molecular simulation picture of DNA hydration around A- and B-DNA [My Copy] Biopolymers, Vol. 48, No. 4. (1998), pp. 199-209. by Michael Feig, Montgomery B. Pettitt posted to electrostatics nucleic_acids solvation by sobolevnrm on 2008-04-25 14:56:37 as along with 1 group baker-group
	Accurate prediction of protonation state as a prerequisite for reliable MM-PB(GB)SA binding free energy calculations of HIV-1 protease inhibitors [My Copy] Journal of Computational Chemistry, Vol. 29, No. 5. (2008), pp. 673-685. by Kitiyaporn Wittayanarakul, Supot Hannongbua, Michael Feig posted to electrostatics pka protein-ligand_interactions solvation by sobolevnrm on 2008-04-03 11:57:01 as along with 4 people and 1 group mijogiffin dmobley sunhwan boris_aguilar baker-group
	Conformational Sampling of Peptides in Cellular Environments [My Copy] Biophys. J., Vol. 94, No. 3. (1 February 2008), pp. 747-759. by Seiichiro Tanizaki, Jacob Clifford, Brian D. Connelly, Michael Feig posted to protein-membrane_interactions solvation by sobolevnrm on 2008-02-15 12:37:04 as along with 1 group baker-group
	A correlation-based method for the enhancement of scoring functions on funnel-shaped energy landscapes [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 1. (2006), pp. 155-164. by Andrew W. Stumpff-Kane, Michael Feig posted to protein-ligand_interactions structure_prediction by sobolevnrm on 2007-12-18 13:05:11 as along with 1 group baker-group
	Sampling of near-native protein conformations during protein structure refinement using a coarse-grained model, normal modes, and molecular dynamics simulations [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Andrew W. Stumpff-Kane, Katarzyna Maksimiak, Michael S. Lee, Michael Feig posted to multiscale quasiharmonic_models by sobolevnrm on 2007-09-24 13:17:24 as along with 1 person and 2 groups barry structural_bioinformatics baker-group
	Kinetics from Implicit Solvent Simulations of Biomolecules as a Function of Viscosity [My Copy] Journal of Chemical Theory and Computation (in press) by M. Feig posted to kinetics molecular_dynamics solvation by sobolevnrm on 2007-07-15 22:17:37 as along with 1 group baker-group
	Highly accurate biomolecular electrostatics in continuum dielectric environments [My Copy] Journal of Computational Chemistry (in press) by Y. C. Zhou, M. Feig, G. W. Wei posted to electrostatics mathematics by sobolevnrm on 2007-05-25 14:38:05 as along with 1 person and 1 group trichner baker-group
	An Implicit Membrane Generalized Born Theory for the Study of Structure, Stability, and Interactions of Membrane Proteins [My Copy] Biophysical Journal, Vol. 85, No. 5. (2003), pp. 2900-18. by W. Im, M. Feig, Iii posted to biomembranes electrostatics solvation by sobolevnrm on 2007-05-25 14:35:46 as along with 1 group baker-group
	Implicit Solvent Simulations of DNA and DNA-Protein Complexes: Agreement with Explicit Solvent vs Experiment [My Copy] Journal of Physical Chemistry B, Vol. 110, No. 34. (2006), pp. 17240-51. by J. Chocholousova, M. Feig posted to electrostatics nucleic_acids solvation by sobolevnrm on 2007-05-25 14:23:18 as along with 1 group baker-group
	Balancing an accurate representation of the molecular surface in generalized born formalisms with integrator stability in molecular dynamics simulations [My Copy] Journal of Computational Chemistry, Vol. 27, No. 6. (2006), pp. 719-29. by J. Chocholousovã!', M. Feig posted to electrostatics molecular_dynamics solvation by sobolevnrm on 2007-05-25 14:19:55 as along with 1 group baker-group
	Molecular Dynamics Simulations of Large Integral Membrane Proteins with an Implicit Membrane Model [My Copy] Journal of Physical Chemistry B, Vol. 110, No. 1. (2006), pp. 548-56. by S. Tanizaki, M. Feig posted to biomembranes electrostatics solvation by sobolevnrm on 2007-05-25 14:19:27 as along with 1 group baker-group
	New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations [My Copy] Journal of Computational Chemistry, Vol. 24, No. 11. (2003), pp. 1348-56. by M. S. Lee, M. Feig, Jr, Iii posted to electrostatics solvation by sobolevnrm on 2007-05-25 14:18:24 as along with 1 group baker-group
	A generalized Born formalism for heterogeneous dielectric environments: Application to the implicit modeling of biological membranes [My Copy] Journal of Chemical Physics, Vol. 122 (2005) by S. Tanizaki, M. Feig posted to biomembranes electrostatics by sobolevnrm on 2007-05-25 14:16:05 as along with 1 group baker-group
	Diffusion of Solvent around Biomolecular Solutes: A Molecular Dynamics Simulation Study [My Copy] Biophysical Journal, Vol. 75, No. 1. (1998), pp. 150-8. by V. A. Makarov, M. Feig, B. K. Andrews, B. M. Pettitt posted to nucleic_acids solvation by sobolevnrm on 2007-05-25 14:12:08 as along with 1 group baker-group
	MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology [My Copy] Journal of Molecular Graphics and Modelling, Vol. 22, No. 5. (2004), pp. 377-395. by M. Feig, J. Karanicolas, Iii posted to molecular_dynamics multiscale software by sobolevnrm on 2007-05-25 14:07:09 as along with 1 group baker-group
	Sodium and chlorine ions as part of the DNA solvation shell [My Copy] Biophysical Journal, Vol. 77, No. 4. (1999), pp. 1769-1781. by M. Feig, B. M. Pettitt posted to molecular_dynamics nucleic_acids solvation by sobolevnrm on 2007-05-25 14:06:49 as along with 1 group baker-group
	Recent advances in the development and application of implicit solvent models in biomolecule simulations [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 2. (2004), pp. 217-224. by M. Feig, Iii posted to electrostatics solvation by sobolevnrm on 2007-05-25 14:06:49 as along with 1 group baker-group
	Implicit solvation based on generalized Born theory in different dielectric environments [My Copy] Journal of Chemical Physics, Vol. 120, No. 2. (2004), pp. 903-911. by M. Feig, W. Im, Iii posted to electrostatics by sobolevnrm on 2007-05-25 14:01:00 as along with 1 group baker-group
	Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures [My Copy] Journal of Computational Chemistry, Vol. 25, No. 2. (2004), pp. 265-284. by M. Feig, A. Onufriev, M. S. Lee, W. Im, D. A. Case, Iii posted to electrostatics by sobolevnrm on 2007-05-25 13:55:43 as along with 1 group baker-group

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sobolevnrm's Feig:M [23 articles] Export Sort

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