sobolevnrm's Ma:J [19 articles] Export Sort

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	CHARMM: The biomolecular simulation program [My Copy] Journal of Computational Chemistry, Vol. 30, No. 10. (30 July 2009), pp. 1545-1614. by B. R. Brooks, C. L. Brooks, A. D. Mackerell, et al.L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York, M. Karplus posted to molecular_dynamics molecular_simulation by sobolevnrm on 2009-05-19 12:00:47 as along with 10 people and 1 group ckmyo dgront rodrigofaccioli mmuecke medic0747 flbarroso jrperillaj xavierprat saravan dimka baker-group
	A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (1 October 2008) by Mingyang Lu, Jianpeng Ma posted to quasiharmonic_models by sobolevnrm on 2008-12-28 15:36:01 as along with 6 people and 5 groups aqeel apaydin ruvido agrossfield skoddet barry baker-group Nielsen group structural_bioinformatics McCammon Bioinformatics
	iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources [My Copy] PLoS ONE, Vol. 3, No. 5. (2008) by Ivo D. Dinov, Daniel Rubin, William Lorensen, et al.Jonathan Dugan, Jeff Ma, Shawn Murphy, Beth Kirschner, William Bug, Michael Sherman, Aris Floratos, David Kennedy, H. V. Jagadish, Jeanette Schmidt, Brian Athey, Andrea Califano, Mark Musen, Russ Altman, Ron Kikinis, Isaac Kohane, Scott Delp, Stott D. Parker, Arthur W. Toga posted to bioinformatics software by sobolevnrm on 2008-08-09 22:39:23 as
	A new method for coarse-grained elastic normal-mode analysis [My Copy] Journal of Chemical Theory and Computation, Vol. 2, No. 3. (2006), pp. 464-71. by M. Lu, B. Poon, J. Ma posted to quasiharmonic_models by sobolevnrm on 2007-06-05 13:06:48 as along with 1 group baker-group
	The Allosteric Mechanism of Yeast Chorismate Mutase: A Dynamic Analysis [My Copy] Journal of Molecular Biology, Vol. 356, No. 1. (2006), pp. 237-47. by Y. Kong, J. Ma, M. Karplus, W. N. Lipscomb posted to allostery quasiharmonic_models by sobolevnrm on 2007-05-25 14:19:28 as along with 1 group baker-group
	Folding of Small Helical Proteins Assisted by Small-Angle X-Ray Scattering Profiles [My Copy] Structure, Vol. 13, No. 11. (2005), pp. 1587-97. by Y. Wu, X. Tian, M. Lu, M. Chen, Q. Wang, J. Ma posted to protein_folding quasiharmonic_models by sobolevnrm on 2007-05-25 14:19:04 as along with 1 group baker-group
	The Role of Shape in Determining Molecular Motions [My Copy] Biophysical Journal, Vol. 89, No. 4. (2005), pp. 2395-401. by M. Lu, J. Ma posted to quasiharmonic_models by sobolevnrm on 2007-05-25 14:18:44 as along with 1 group baker-group
	Usefulness and Limitations of Normal Mode Analysis in Modeling Dynamics of Biomolecular Complexes [My Copy] Structure, Vol. 13, No. 3. (2005), pp. 373-80. by J. Ma posted to quasiharmonic_models by sobolevnrm on 2007-05-25 14:15:43 as along with 1 group baker-group
	The Unfolding Action of GroEL on a Protein Substrate [My Copy] Biophysical Journal, Vol. 87, No. 1. (2004), pp. 562-73. by A. van der Vaart, J. Ma, K. Karplus posted to molecular_dynamics protein_folding by sobolevnrm on 2007-05-25 14:12:08 as along with 1 group baker-group
	Substructure synthesis method for simulating large molecular complexes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 1. (2003), pp. 104-109. by D. Ming, Y. Kong, Y. Wu, J. Ma posted to multiscale quasiharmonic_models by sobolevnrm on 2007-05-25 14:07:52 as along with 1 group baker-group
	Substructure synthesis method for simulating large molecular complexes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 1. (2003), pp. 104-109. by D. Ming, Y. Kong, Y. Wu, J. Ma posted to multiscale quasiharmonic_models by sobolevnrm on 2007-05-25 14:07:52 as along with 1 group baker-group
	Experimental Verification of Conformational Variation of Human Fatty Acid Synthase as Predicted by Normal Mode Analysis [My Copy] Structure, Vol. 12 (2004), pp. 185-191. by J. Brink, S. J. Ludtke, Y. Kong, S. J. Wakil, J. Ma, W. Chiu posted to structure quasiharmonic_models by sobolevnrm on 2007-05-25 14:03:37 as along with 1 group baker-group
	Allosteric transition pathways in the lactose repressor protein core domains: Asymmetric motions in a homodimer [My Copy] Protein Science, Vol. 12, No. 11. (2003), pp. 2523-2541. by T. C. Flynn, Swint L. Kruse, Y. Kong, C. Booth, K. S. Matthews, J. Ma posted to allostery molecular_dynamics by sobolevnrm on 2007-05-25 14:01:51 as along with 1 group baker-group
	Molecular switch in signal transduction: reaction paths of the conformational changes in ras p21 [My Copy] Proc Natl Acad Sci U S A, Vol. 94, No. 22. (1997), pp. 11905-10. by J. Ma, M. Karplus posted to allostery molecular_dynamics quasiharmonic_models by sobolevnrm on 2007-05-25 13:57:46 as along with 1 group baker-group
	A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase [My Copy] Structure (Camb), Vol. 10, No. 7. (2002), pp. 921-31. by J. Ma, T. C. Flynn, Q. Cui, A. G. Leslie, J. E. Walker, M. Karplus posted to allostery molecular_dynamics quasiharmonic_models by sobolevnrm on 2007-05-25 13:57:46 as along with 1 group baker-group
	Conformational pathways in the gating of Escherichia coli mechanosensitive channel [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 9. (2002), pp. 5999-6004. by Y. Kong, Y. Shen, T. E. Warth, J. Ma posted to allostery molecular_dynamics quasiharmonic_models by sobolevnrm on 2007-05-25 13:57:46 as along with 1 group baker-group
	Conformational flexibility of pyruvate dehydrogenase complexes: a computational analysis by quantized elastic deformational model [My Copy] Journal of Molecular Biology, Vol. 330, No. 1. (2003), pp. 129-35. by Y. Kong, D. Ming, Y. Wu, J. K. Stoops, Z. H. Zhou, J. Ma posted to allostery quasiharmonic_models by sobolevnrm on 2007-05-25 13:57:45 as along with 1 group baker-group
	Refinement of F-Actin Model against Fiber Diffraction Data by Long-Range Normal Modes [My Copy] Biophys J, Vol. 86, No. 1. (2004), pp. 116-24. by Y. Wu, J. Ma posted to structure cellular_mechanics quasiharmonic_models by sobolevnrm on 2007-05-25 13:57:26 as along with 1 group baker-group
	Simulation of F-actin filaments of several microns [My Copy] Biophys J, Vol. 85, No. 1. (2003), pp. 27-35. by D. Ming, Y. Kong, Y. Wu, J. Ma posted to multiscale cellular_mechanics quasiharmonic_models by sobolevnrm on 2007-05-25 13:57:26 as along with 1 group baker-group

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electrostatics	2020
solvation	1604
biomembranes	1513
statistical_mechanics	674
mathematics	625
bioinformatics	619
diffusion	529
molecular_dynamics	514
molecular_simulation	512
nucleic_acids	480
multiscale	409
quasiharmonic_models	340
structure	329
nanotech	286
allostery	269
review	212
beyond_mean_field	210
protein_folding	204
protein-protein_interactions	187
systems_biology	186
software	178
kinetics	171
protein-ligand_interactions	167
acetylcholinesterase	167
misc	151
biological_systems	150
experimental_methodology	148
thrombin	143
correlated_mutations	126
neuromuscular_junctions	121
pka	119
protein-nucleic_acid_interactions	117
sterols	113
drug_design	111
outer_hair_cells	104
database	97
metalloregulation	96
structure_prediction	91
cellular_mechanics	91
ontology	87
imaging	86
ccne	84
quantum_mechanics	83
protein-membrane_interactions	83
nonpolar	80
nerve_agents	78
nitric_oxide	74
career	71
visualization	69
emulsions	67
interfaces	57
ligand-membrane_interactions	57
cancer	52
nmr	52
protein_engineering	49
free_energy	45
mechanics	44
clustering	42
integral_equation	41
teaching	40
ion_channels	38
enhanced_sampling	38
ultrasound	33
perfluorocarbons	31
statistics	27
graph_theory	26
programming	25
sccne	24
informatics	23
helicase	22
pgdh	21
flexoelectric	20
ribosome	17
fluid_mechanics	17
nanotechnology	15
drug_delivery	15
quasiharmonic-models	15
molecular-simulation	15
toxicity	14
geometry	14
gating	13
statistical-mechanics	12
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energy_landscapes	10
funding	10
pdb2pqr	9
cytoskeleton	8
nikr	8
molecular-dynamics	8
electrochemistry	6
cholesterol	6
protein-ligand-interactions	5
finite_element	5
protein-protein-interactions	5
protein-folding	4
single_molecule	4
docking	4
nitric-oxide	4
optimization	3
scattering	3
protein	3
finite_differences	3
integral-equation	3
ligand-membrane-interactions	3
thermodynamics	3
hydrodynamics	3
nucleic-acids	3
quantum-mechanics	2
ethics	2
neuroscience	2
text_mining	2
conformation	2
boundary_element	2
generalized_born	2
oxysterols	2
biodistribution	2
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salicylate	2
systems-biology	2
nanoparticles	2
computational_geometry	2
magnetism	2
protein-membrane-interactions	2
fluorescence_quenching	1
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redox_potentials	1
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data_mining	1
integral_equations	1
protein-design	1
colloid-complex	1
red_blood_cell	1
hydrogen_bonds	1
design	1
mice	1
systems	1
phosphatidylcholines	1
text-mining	1
protein-allostery	1
mutual-information	1
protein-nucleic-acid-interactions	1
cheminformatics	1
melittin	1
wavelets	1

sobolevnrm's Ma:J [19 articles] Export Sort

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