sobolevnrm's Schulten:K [61 articles] Export

Recent papers posted to sobolevnrm's library by the author Schulten:K. You can also see everyone's Schulten:K.

	Discovery through the computational microscope [My Copy] Structure, Vol. 17, No. 10. (Oct 2009), pp. 1295-306. by Eric H. Lee, Jen Hsin, Marcos Sotomayor, Gemma Comellas, Klaus Schulten posted to review molecular-simulation by sobolevnrm on 2009-11-02 12:47:50 as
	Multilevel summation of electrostatic potentials using graphics processing units☆ [My Copy] Parallel Computing (25 December 2008) by David J. Hardy, John E. Stone, Klaus Schulten posted to electrostatics mathematics programming by sobolevnrm on 2009-03-26 11:36:33 as along with 1 person and 1 group afenley baker-group
	Photosynthetic apparatus of purple bacteria [My Copy] Quarterly Reviews of Biophysics, Vol. 35, No. 01. (2002), pp. 1-62. by Xiche Hu, Thorsten Ritz, Ana Damjanovic, Felix Autenrieth, Klaus Schulten posted to diffusion review systems_biology by sobolevnrm on 2009-03-13 11:20:35 as along with 1 group baker-group
	Molecular Dynamics Simulations of Discoidal Bilayers Assembled from Truncated Human Lipoproteins [My Copy] Biophys. J., Vol. 88, No. 1. (1 January 2005), pp. 548-556. by Amy Y. Shih, Ilia G. Denisov, James C. Phillips, Stephen G. Sligar, Klaus Schulten posted to biomembranes molecular_dynamics nanotech by sobolevnrm on 2009-03-03 15:51:20 as along with 3 people and 1 group paulschlesinger gjuggler softsimu baker-group
	Four-Scale Description of Membrane Sculpting by BAR Domains [My Copy] Biophysical Journal, Vol. 95, No. 6. (2008), 2806-2821. by Anton Arkhipov, Ying Yin, Klaus Schulten posted to biomembranes multiscale molecular_simulation protein-membrane_interactions by sobolevnrm on 2008-12-15 12:52:11 as
	First passage time approach to diffusion controlled reactions [My Copy] The Journal of Chemical Physics, Vol. 72, No. 8. (1980), 4350-4357. by Attila Szabo, Klaus Schulten, Zan Schulten posted to diffusion kinetics statistical_mechanics by sobolevnrm on 2008-12-15 12:52:08 as
	Scalable molecular dynamics with NAMD [My Copy] Journal of Computational Chemistry, Vol. 26, No. 16. (December 2005), pp. 1781-1802. by James C. Phillips, Rosemary Braun, Wei Wang, et al.James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D. Skeel, Laxmikant Kalé, Klaus Schulten posted to molecular_dynamics molecular_simulation software by sobolevnrm on 2008-04-22 11:48:56 as along with 20 people and 5 groups krapnik pjkiley flbarroso yxue r2s2 grondina rpetrenko oteri oceanwind dfgreen vahmurk gisle dimka jwm ttjoseph sangeetha yoel_rf bilab wilsoros ibuch Radiation_Damage Stressosome Bioinformatics insilicodrug baker-group
	O2 Migration Pathways Are Not Conserved across Proteins of a Similar Fold [My Copy] Biophys. J., Vol. 93, No. 10. (15 November 2007), pp. 3591-3600. by Jordi Cohen, Klaus Schulten posted to bioinformatics diffusion misc by sobolevnrm on 2007-11-01 11:58:18 as along with 1 person and 1 group Christophe baker-group
	Atomic-level structural and functional model of a bacterial photosynthetic membrane vesicle [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15723-15728. by Melih K. Sener, John D. Olsen, Neil C. Hunter, Klaus Schulten posted to biomembranes diffusion multiscale by sobolevnrm on 2007-10-08 12:55:45 as along with 1 person and 1 group carterb baker-group
	Accelerating molecular modeling applications with graphics processors [My Copy] Journal of Computational Chemistry, Vol. 28, No. 16. (25 September 2007), pp. 2618-2640. by John E. Stone, James C. Phillips, Peter L. Freddolino, David J. Hardy, Leonardo G. Trabuco, Klaus Schulten posted to molecular_simulation by sobolevnrm on 2007-10-01 13:17:13 as along with 9 people and 1 group ihaque naoya charris5 timg BragilMassoud ruvido yalexeev mikaellund afenley baker-group
	Molecular dynamics simulation of a bilayer of 200 lipids in the gel and in the liquid crystal phase [My Copy] Journal of Physical Chemistry, Vol. 97, No. 31. (1993), pp. 8343-60. by H. Heller, M. Schaefer, K. Schulten posted to biomembranes molecular_simulation by sobolevnrm on 2007-09-04 13:12:20 as along with 1 group baker-group
	How Directional Translocation is Regulated in a DNA Helicase Motor [My Copy] Biophys. J. (17 August 2007), biophysj.107.109546. by Jin Yu, Taekjip Ha, Klaus Schulten posted to allostery helicase correlated_mutations quasiharmonic_models by sobolevnrm on 2007-08-26 19:58:10 as along with 1 group baker-group
	Assembly of Lipids and Proteins into Lipoprotein Particles [My Copy] Journal of Physical Chemistry B (in press) by A. Y. Shih, A. Arkhipov, P. L. Freddolino, S. G. Sligar, K. Schulten posted to biomembranes multiscale by sobolevnrm on 2007-08-15 12:42:05 as along with 1 group baker-group
	Disassembly of Nanodiscs with Cholate [My Copy] Nano Letters, Vol. 7, No. 6. (2007), pp. 1692-6. by A. Y. Shih, P. L. Freddolino, S. G. Sligar, K. Schulten posted to biomembranes molecular_dynamics multiscale nanotech by sobolevnrm on 2007-06-19 13:29:29 as along with 1 group baker-group
	Single-Molecule Experiments in Vitro and in Silico [My Copy] Science, Vol. 316, No. 5828. (2007), pp. 1144-8. by M. Sotomayor, K. Schulten posted to molecular_simulation by sobolevnrm on 2007-06-07 12:41:41 as along with 1 group baker-group
	Molecular Dynamics Study of a Membrane-Water Interface [My Copy] Journal of Physical Chemistry, Vol. 99, No. 7. (1995), pp. 2194-207. by F. Zhou, K. Schulten posted to biomembranes electrostatics solvation by sobolevnrm on 2007-05-25 14:37:07 as along with 1 group baker-group
	Stability and Dynamics of Virus Capsids Described by Coarse-Grained Modeling [My Copy] Structure, Vol. 14, No. 12. (2006), pp. 1767-77. by A. Arkhipov, P. L. Freddolino, K. Schulten posted to multiscale by sobolevnrm on 2007-05-25 14:36:28 as along with 1 group baker-group
	Coarse-Grained Molecular Dynamics Simulations of a Rotating Bacterial Flagellum [My Copy] Biophysical Journal, Vol. 91, No. 12. (2006), pp. 4589-97. by A. Arkhipov, P. L. Freddolino, K. Imada, K. Namba, K. Schulten posted to multiscale by sobolevnrm on 2007-05-25 14:32:56 as along with 1 group baker-group
	Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations [My Copy] Journal of Structural Biology (in press) by A. Y. Shih, P. L. Freddolino, A. Arkhipov, K. Schulten posted to biomembranes multiscale by sobolevnrm on 2007-05-25 14:24:57 as along with 1 group baker-group
	PcrA Helicase, a Prototype ATP-Driven Molecular Motor [My Copy] Structure, Vol. 14 (2006), pp. 1345-53. by M. Dittrich, K. Schulten posted to helicase by sobolevnrm on 2007-05-25 14:23:19 as along with 1 group baker-group
	Molecular mechanisms of cellular mechanics [My Copy] Physical Chemistry Chemical Physics, Vol. 8 (2006), pp. 2692-706. by M. Gao, M. Sotomayor, E. Villa, E. H. Lee, K. Schulten posted to multiscale cellular_mechanics by sobolevnrm on 2007-05-25 14:23:18 as along with 1 group baker-group
	Structure-based Model of the Stepping Motor of PcrA Helicase [My Copy] Biophysical Journal, Vol. 91, No. 6. (2006), pp. 2097-114. by J. Yu, T. Ha, K. Schulten posted to helicase molecular_dynamics by sobolevnrm on 2007-05-25 14:23:17 as along with 1 group baker-group
	Extraction of Lipids from Phospholipid Membranes by Steered Molecular Dynamics [My Copy] Journal of Molecular Modeling, Vol. 3, No. 12. (1997), pp. 473-5. by S. Stepaniants, S. Izrailev, K. Schulten posted to biomembranes by sobolevnrm on 2007-05-25 14:23:16 as along with 1 group baker-group
	Molecular Dynamics study of MscL interactions with a curved lipid bilayer [My Copy] Biophysical Journal, Vol. 91, No. 5. (2006), pp. 1630-7. by G. R. Meyer, J. Gullingsrud, K. Schulten, B. Martinac posted to biomembranes by sobolevnrm on 2007-05-25 14:23:16 as along with 1 group baker-group
	Imaging the migration pathways for O2, CO, NO, and Xe inside myoglobin [My Copy] Biophysical Journal (in press) by J. Cohen, A. Arkhipov, R. I. Braun, K. Schulten posted to molecular_simulation protein-ligand_interactions by sobolevnrm on 2007-05-25 14:23:16 as along with 1 group baker-group
	Modeling DNA loops using the theory of elasticity [My Copy] Physical Review E, Vol. 73 (2006) by A. Balaeff, L. Mahadevan, K. Schulten posted to multiscale nucleic_acids by sobolevnrm on 2007-05-25 14:22:45 as along with 1 group baker-group
	Molecular Dynamics Simulations of the Complete Satellite Tobacco Mosaic Virus [My Copy] Structure, Vol. 14, No. 3. (2006), pp. 437-49. by P. L. Freddolino, A. S. Arkhipov, S. B. Larson, A. Mcpherson, K. Schulten posted to molecular_dynamics by sobolevnrm on 2007-05-25 14:19:55 as along with 1 group baker-group
	Coarse Grained Protein-Lipid Model with Application to Lipoprotein Particles [My Copy] Journal of Physical Chemistry B, Vol. 110, No. 8. (2006), pp. 3674-84. by A. Y. Shih, A. Arkhipov, P. L. Freddolino, K. Schulten posted to biomembranes multiscale by sobolevnrm on 2007-05-25 14:19:54 as along with 1 group baker-group
	Simulation of the electric response of DNA translocation through a semiconductor nanoporeâcapacitor [My Copy] Nanotechnology, Vol. 17, No. 3. (2006), pp. 622-33. by M. E. Gracheva, A. Xiong, A. Aksimentiev, K. Schulten, G. Timp, J. P. Leburton posted to diffusion electrostatics multiscale nucleic_acids by sobolevnrm on 2007-05-25 14:19:53 as along with 1 group baker-group
	Ion-Nanotube Terahertz Oscillator [My Copy] Physical Review Letters, Vol. 95 (2005) by D. Lu, Y. Li, U. Ravaioli, K. Schulten posted to electrostatics nanotech by sobolevnrm on 2007-05-25 14:19:26 as along with 1 group baker-group
	Molecular dynamics simulations of proteins in lipid bilayers [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 4. (2005), pp. 423-31. by J. Gumbart, Y. Wang, A. Aksimentiev, E. Tajkhorshid, K. Schulten posted to biomembranes by sobolevnrm on 2007-05-25 14:18:24 as along with 1 group baker-group
	Imaging {alpha}-Hemolysin with Molecular Dynamics: Ionic Conductance, Osmotic Permeability, and the Electrostatic Potential Map [My Copy] Biophysical Journal, Vol. 88, No. 6. (2005), pp. 3745-61. by A. Aksimentiev, K. Schulten posted to biomembranes by sobolevnrm on 2007-05-25 14:17:41 as along with 1 group baker-group
	Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 19. (2005), pp. 6783-8. by E. Villa, A. Balaeff, K. Schulten posted to molecular_dynamics multiscale protein-nucleic_acid_interactions by sobolevnrm on 2007-05-25 14:17:41 as along with 1 group baker-group
	In Search of the Hair-Cell Gating Spring: Elastic Properties of Ankyrin and Cadherin Repeats [My Copy] Structure, Vol. 13, No. 4. (2005), pp. 669-82. by M. Sotomayor, D. P. Corey, K. Schulten posted to outer_hair_cells by sobolevnrm on 2007-05-25 14:17:40 as along with 1 group baker-group
	Multiscale Method for Simulating Protein-DNA Complexes [My Copy] Multiscale Modeling and Simulation, Vol. 2, No. 4. (2004), pp. 527-53. by E. Villa, A. Balaeff, L. Mahadven, K. Schulten posted to multiscale protein-nucleic_acid_interactions by sobolevnrm on 2007-05-25 14:14:50 as along with 1 group baker-group
	Integrin Activation In Vivo and In Silico [My Copy] Structure, Vol. 12, No. 12. (2004), pp. 2096-8. by M. Gao, K. Schulten posted to cellular_mechanics by sobolevnrm on 2007-05-25 14:14:50 as along with 1 group baker-group
	Collective Diffusion Model for Water Permeation through Microscopic Channels [My Copy] Physical Review Letters, Vol. 93, No. 22. (2004) by F. Zhu, E. Tajkhorshid, K. Schulten posted to diffusion solvation by sobolevnrm on 2007-05-25 14:14:06 as along with 1 group baker-group
	Structural Insights into How the MIDAS Ion Stabilizes Integrin Binding to an RGD Peptide under Force [My Copy] Structure, Vol. 12, No. 11. (2004), pp. 2049-58. by D. Craig, M. Gao, K. Schulten, V. Vogel posted to cellular_mechanics by sobolevnrm on 2007-05-25 14:14:06 as along with 1 group baker-group
	Microscopic Kinetics of DNA Translocation through Synthetic Nanopores [My Copy] Biophysical Journal, Vol. 87, No. 3. (2004), pp. 2086-97. by A. Aksimentiev, J. B. Heng, G. Timp, K. Schulten posted to molecular_simulation nucleic_acids by sobolevnrm on 2007-05-25 14:13:08 as along with 1 group baker-group
	Role of Hydrogen-Bond Network in Energy Storage of Bacteriorhodopsin's Light-Driven Proton Pump Revealed by ab Initio Normal-Mode Analysis [My Copy] Journal of the American Chemical Society, Vol. 126, No. 34. (2004), pp. 10516-7. by S. Hayashi, E. Tajkhorshid, H. Kandori, K. Schulten posted to molecular_simulation multiscale quasiharmonic_models by sobolevnrm on 2007-05-25 14:13:08 as along with 1 group baker-group
	Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 4. (1999), pp. 1351-6. by A. Krammer, H. Lu, B. Isralewitz, K. Schulten, V. Vogel posted to molecular_dynamics cellular_mechanics by sobolevnrm on 2007-05-25 14:12:48 as along with 1 group baker-group
	Computational Studies of Membrane Channels [My Copy] Structure, Vol. 12, No. 8. (2004), pp. 1343-51. by B. Roux, K. Schulten posted to molecular_simulation solvation by sobolevnrm on 2007-05-25 14:12:47 as along with 1 group baker-group
	Lipid Bilayer Pressure Profiles and Mechanosensitive Channel Gating [My Copy] Biophysical Journal, Vol. 86, No. 6. (2004), pp. 3496-509. by J. Gullingsrud, K. Schulten posted to biomembranes by sobolevnrm on 2007-05-25 14:10:27 as along with 1 group baker-group
	$My PDF kalã\copyright_99_namd2.pdf$ NAMD2: Greater Scalability for Parallel Molecular Dynamics [My Copy] Journal of Computational Physics, Vol. 151, No. 1. (1999), pp. 283-312. by L. Kalã\copyright, R. Skeel, M. Bhandarkar, et al.R. Brunner, A. Gursoy, N. Krawetz, J. Phillips, A. Shinozaki, K. Varadarajan, K. Schulten posted to molecular_dynamics software by sobolevnrm on 2007-05-25 14:09:14 as along with 1 group baker-group
	Steered molecular dynamics and mechanical functions of proteins [My Copy] Current Opinion in Structural Biology, Vol. 11, No. 2. (2001), pp. 224-230. by B. Isralewitz, M. Gao, K. Schulten posted to molecular_dynamics by sobolevnrm on 2007-05-25 14:07:53 as along with 1 group baker-group
	Steered molecular dynamics and mechanical functions of proteins [My Copy] Current Opinion in Structural Biology, Vol. 11, No. 2. (2001), pp. 224-230. by B. Isralewitz, M. Gao, K. Schulten posted to molecular_dynamics by sobolevnrm on 2007-05-25 14:07:52 as along with 1 group baker-group
	Calculating potentials of mean force from steered molecular dynamics simulations [My Copy] Journal of Chemical Physics, Vol. 120, No. 13. (2004) by S. Park, K. Schulten posted to molecular_dynamics by sobolevnrm on 2007-05-25 14:05:06 as along with 1 group baker-group
	Insights into the Molecular Mechanism of Rotation in the Fo Sector of ATP Synthase [My Copy] Biophysical Journal, Vol. 86, No. 3. (2004), pp. 1332-1344. by A. Aksimentiev, I. A. Balabin, R. H. Fillingame, K. Schulten posted to molecular_dynamics quasiharmonic_models by sobolevnrm on 2007-05-25 14:04:29 as along with 1 group baker-group
	Structural basis for cooperative DNA binding by CAP and lac repressor [My Copy] Structure, Vol. 12, No. 1. (2004), pp. 123-132. by A. Balaeff, L. Mahadven, K. Schulten posted to molecular_dynamics multiscale nucleic_acids by sobolevnrm on 2007-05-25 14:01:51 as along with 1 group baker-group
	Tuning the mechanical stability of fibronectin type III modules through sequence variations [My Copy] Structure, Vol. 12, No. 1. (2004), pp. 21-30. by D. Craig, M. Gao, K. Schulten, V. Vogel posted to molecular_dynamics multiscale cellular_mechanics by sobolevnrm on 2007-05-25 14:01:51 as along with 1 group baker-group

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electrostatics	2009
solvation	1596
biomembranes	1498
statistical_mechanics	672
mathematics	621
bioinformatics	606
diffusion	526
molecular_simulation	509
molecular_dynamics	509
nucleic_acids	476
multiscale	409
quasiharmonic_models	336
structure	322
nanotech	287
allostery	268
review	203
protein_folding	202
beyond_mean_field	200
protein-protein_interactions	186
systems_biology	183
software	176
kinetics	168
acetylcholinesterase	167
protein-ligand_interactions	166
misc	151
biological_systems	150
experimental_methodology	147
thrombin	143
correlated_mutations	125
neuromuscular_junctions	121
pka	118
protein-nucleic_acid_interactions	116
sterols	111
drug_design	106
outer_hair_cells	102
metalloregulation	96
database	95
structure_prediction	91
cellular_mechanics	91
imaging	86
ontology	84
ccne	84
protein-membrane_interactions	83
quantum_mechanics	82
nonpolar	80
nerve_agents	78
nitric_oxide	74
career	71
visualization	69
emulsions	67
interfaces	55
ligand-membrane_interactions	54
cancer	50
nmr	50
protein_engineering	47
mechanics	44
integral_equation	41
free_energy	39
teaching	39
clustering	39
ion_channels	37
enhanced_sampling	34
ultrasound	33
perfluorocarbons	31
statistics	26
sccne	24
programming	22
pgdh	21
informatics	21
helicase	20
graph_theory	19
flexoelectric	18
fluid_mechanics	17
ribosome	17
quasiharmonic-models	15
molecular-simulation	15
drug_delivery	15
toxicity	13
statistical-mechanics	13
gating	13
geometry	12
apbs	11
nanotechnology	10
funding	10
pdb2pqr	9
molecular-dynamics	8
beyond-mean-field	8
energy_landscapes	8
nikr	8
cytoskeleton	7
electrochemistry	6
protein-ligand-interactions	5
free-energy	5
protein-protein-interactions	5
file-import-09-10-31	5
cholesterol	4
single_molecule	4
docking	4
graph-theory	4
drug-design	4
protein-folding	4
nitric-oxide	4
biomembrane	4
scattering	3
thermodynamics	3
optimization	3
integral-equation	3
animals	3
nucleic-acids	3
finite_element	3
ligand-membrane-interactions	3
humans	3
nanoparticles	2
models-molecular	2
quantum-mechanics	2
energy-landscape	2
virus	2
finite-differences	2
electric-double-layers	2
poisson-boltzmann-theory	2
biodistribution	2
fatty-acids-unsaturated	2
systems-biology	2
ethics	2
oxysterols	2
neuroscience	2
hydrodynamics	2
protein-membrane-interactions	2
generalized_born	2
monte-carlo-simulations	2
computer-simulation	2
proteins	2
computational_geometry	2
boundary_element	2
magnetism	2
red-blood-cell	2
models-chemical	2
protein-binding	1
integrin-alphavbeta3	1
chemical-physics	1
activity-coefficients	1
microtubule	1
drug-delivery-systems	1
recent-progress	1
anisotropy	1
electrolyte-solutions	1
dynamics-simulation	1
thermodynamics-kinetic-theory	1
rab-gtp-binding-proteins	1
density-functional-theory	1
interface	1
biomedical-research	1
air-water-interface	1
electrolytes	1
alkalies	1
multivalent-ions	1
arthritis-experimental	1
information-dissemination	1
genomics	1
multigrid	1
cytokine-receptor	1
oppositely-charged	1
finite-elements	1
inflammation	1
magnetic-resonance-spectroscopy	1
guidelines-as-topic	1
escherichia-coli	1
research-design	1
rab-gtpase	1
theoretical-physics	1
lipid-bilayers	1
correlated-mutations	1
water	1
periodicals-as-topic	1
mentors	1
sodium-chloride	1
physical-chemistry	1
organelle-interaction	1
nuclear-magnetic-resonance-biomolecular	1
ionic-fluids	1
conserved-sequence	1
molecular-dynamics-simulations	1
protein-engineering	1
elasticity	1
emotions	1
time-factors	1
dielectric-properties	1
protein-transport	1
amino-acid-sequence	1
solutions	1
mathematical-physics	1
text-mining	1
potentiometric-titration	1
energy-profile	1
electrolyte	1
membrane-fusion	1
chains	1
cations	1
amphoteric-surfaces	1
ligand-binding	1
adenosine-monophosphate	1
conformational-flexibility	1
career-choice	1
neovascularization-pathologic	1
algorithms	1
cyclohexanes	1
efficient-generation	1
protein-conformation	1
web	1
fluorescence_quenching	1
protein-structure-tertiary	1
effective-interaction-potentials	1
earth-metal-ions	1
membrane-microdomains	1
soft-matter	1
motility	1
entropy	1
lipids	1
computational-biology	1
salicylate	1
acetates	1
electrotsatics	1
molecular-conformation	1
double-layer-interactions	1
parameterization	1
organelles	1
finite-element	1
enzyme-stability	1
group-theory	1
sesquiterpenes	1
metabolomics	1
crystallography-x-ray	1
evolution-molecular	1
fatty-acids	1
configurational-entropy	1
aqueous-salt-solutions	1
colloid-complex	1
force-field	1
counterions	1
rats	1
treatment-outcome	1
public-policy	1
choice-behavior	1
enhanced-sampling	1
red_blood_cell	1
mice	1
colloids	1
am1-bcc-model	1
inversion	1
organelle-size	1
solvents	1
systems	1
peer-review-research	1
phosphatidylcholines	1
amino-acids	1
policy	1
counterion-condensation	1
protein-allostery	1
protein-nucleic-acid-interactions	1
condensation	1
serine-endopeptidases	1
mutual-information	1
flexoelectricity	1
annealed-polyelectrolytes	1
atomic-nuclear-physics	1
ionizable-groups	1
electric-double-layer	1
education-graduate	1
phase-equilibria	1
parallel-plates	1
organic-solvents	1
signal-transduction	1
text_mining	1
lipid-metabolism	1
caveolae	1
static-electricity	1
gibbs-energies	1
model	1
lipid-droplet	1
databases-protein	1
integral_equations	1
structure-prediction	1
protein-design	1
adipocytes	1

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