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	Fourier transform convolution integrals applied to generalized Born molecular volume [My Copy] Journal of Computational Chemistry, Vol. 31, No. 3. (2010), pp. 649-659. by Thierry Schüpbach, Vincent Zoete, Brice Tsakam-Sotché, Olivier Michielin posted to solvation electrostatics by sobolevnrm on 2009-12-29 14:59:38 as along with 1 person RamuAnandakrishnan
	Understanding Nanoparticle Diffusion and Exploring Interfacial Nanorheology using Molecular Dynamics Simulations [My Copy] Langmuir, Vol. 26, No. 1. (5 January 2010), pp. 5-9. by Yanmei Song, Mingxiang Luo, Lenore L. Dai posted to nanotech molecular_dynamics interfaces by sobolevnrm on 2009-12-29 14:58:46 as along with 1 person qshao
	High-fidelity geometric modeling for biomedical applications [My Copy] Finite Elements in Analysis and Design, Vol. 44, No. 11. (July 2008), pp. 715-723. by Z. Yu, M. Holst, J. Andrewmccammon posted to mathematics geometry finite_element electrostatics by sobolevnrm on 2009-12-26 03:01:34 as
	A boundary element method for molecular electrostatics with electrolyte effects [My Copy] Journal of Computational Chemistry, Vol. 11, No. 9. (1990), pp. 1080-1086. by Byung J. Yoon, A. M. Lenhoff posted to mathematics electrostatics boundary_elements by sobolevnrm on 2009-12-26 02:59:00 as along with 2 people stephenbond dmitry_s_yershov
	Simulation analysis of the effects of the simultaneous release of quanta of acetylcholine on the endplate current at the neuromuscular junction [My Copy] Math. Comput. Simul., Vol. 59, No. 1-3. (2002), pp. 87-94. by Takashi Naka, Naoto Sakamoto posted to neuromuscular_junction diffusion acetylcholinesterase by sobolevnrm on 2009-12-26 01:49:31 as
	Basic ingredients of free energy calculations: A review [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (23 December 2009), NA. by Clara D. Christ, Alan E. Mark, Wilfred F. van Gunsteren posted to review molecular_simulation free_energy by sobolevnrm on 2009-12-25 18:09:04 as along with 5 people Vadikus Diego_Prada barry RamuAnandakrishnan anuragsethi
	Towards Optimal Multi-level Tiling for Stencil Computations [My Copy] Parallel and Distributed Processing Symposium, 2007. IPDPS 2007. IEEE International In Parallel and Distributed Processing Symposium, 2007. IPDPS 2007. IEEE International (30 March 2007), pp. 1-10. by Lakshminarayanan Renganarayana, Manjukumar Harthikote-Matha, Rinku Dewri, Sanjay Rajopadhye posted to programming mathematics by sobolevnrm on 2009-12-25 02:25:41 as
	Wavelet Methods for Fast Resolution of Elliptic Problems [My Copy] SIAM Journal on Numerical Analysis, Vol. 29, No. 4. (1992), pp. 965-986. by Stephane Jaffard posted to wavelets mathematics by sobolevnrm on 2009-12-24 18:19:36 as
	Intracellular uptake, transport, and processing of nanostructures in cancer cells [My Copy] Nanomedicine: Nanotechnology, Biology and Medicine, Vol. 5, No. 2. (June 2009), pp. 118-127. by B. Devika Chithrani, James Stewart, Christine Allen, David A. Jaffray posted to nanotechnology cancer biomembranes by sobolevnrm on 2009-12-24 18:15:48 as along with 1 person ml115
	Analysis of domain motions in large proteins. [My Copy] Proteins, Vol. 34, No. 3. (15 February 1999), pp. 369-382. by K. Hinsen, A. Thomas, M. J. Field posted to quasiharmonic_models enhanced_sampling by sobolevnrm on 2009-12-24 16:15:24 as along with 2 people anuragsethi aqeel
	Multi-basin dynamics of a protein in a crystal environment [My Copy] Physica D: Nonlinear Phenomena In 16th Annual International Conference of the Center for Nonlinear Studies, Vol. 107, No. 2-4. (01 September 1997), pp. 225-239. by A. García posted to quasiharmonic_models clustering by sobolevnrm on 2009-12-24 15:55:52 as along with 3 people anuragsethi scampos ruvido
	Design considerations for tumour-targeted nanoparticles [My Copy] Nature Nanotechnology, Vol. 5, No. 1. (01 November 2009), pp. 42-47. by Hak S. Choi, Wenhao Liu, Fangbing Liu, et al.Khaled Nasr, Preeti Misra, Moungi G. Bawendi, John V. Frangioni posted to toxicity nanotechnology design by sobolevnrm on 2009-12-24 14:33:11 as along with 1 person qshao
	A Quick Guide for Developing Effective Bioinformatics Programming Skills [My Copy] PLoS Computational Biology, Vol. 5, No. 12. (24 December 2009), e1000589. by Joel T. Dudley, Atul J. Butte posted to teaching review programming bioinformatics by sobolevnrm on 2009-12-24 14:03:38 as along with 30 people farhat teichman sebastien_vigneau GeeSharpMinor gena klauso renatomilani karthikraman PolymeraseI jmanning2k MarkPezzo kgrothoff dakelley timflutre Vincent_Rouilly nuin bayesian paulymer dfdong kiekyon shikin MatthiasH codonusage walshtp abhishek_tiwari kshameer agomez phoenixzxl mfajer neils
	Biomedical Text Mining and Its Applications [My Copy] PLoS Comput Biol, Vol. 5, No. 12. (24 December 2009), e1000597. by Raul Rodriguez-Esteban posted to text_mining review informatics bioinformatics by sobolevnrm on 2009-12-24 14:03:20 as along with 6 people mgaldino arthegall nuin lmichan vkwadhwa kshameer
	Design Principles for Ligand-Sensing, Conformation-Switching Ribozymes [My Copy] PLoS Comput Biol, Vol. 5, No. 12. (24 December 2009), e1000620. by Xi Chen, Andrew D. Ellington posted to protein_engineering nucleic_acids by sobolevnrm on 2009-12-24 14:02:47 as
	Inferring Binding Energies from Selected Binding Sites [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 12. (4 December 2009), e1000590. by Yue Zhao, David Granas, Gary D. Stormo posted to protein-nucleic_acid_interactions free_energy bioinformatics by sobolevnrm on 2009-12-24 14:02:25 as along with 5 people rolandkrause maximilianh emptyhb shikin kshameer
	Revival of High-Order Fluorescence Correlation Analysis: Generalized Theory and Biochemical Applications [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 47. (26 November 2009), pp. 15629-15638. by Artem V. Melnykov, Kathleen B. Hall posted to kinetics experimental_methodology diffusion by sobolevnrm on 2009-12-23 23:10:23 as
	Modulation of polyglutamine conformations and dimer formation by the N-terminus of Huntingtin. [My Copy] Journal of molecular biology (16 December 2009) by Tim E. Williamson, Andreas Vitalis, Scott L. Crick, Rohit V. Pappu posted to protein_folding by sobolevnrm on 2009-12-23 21:50:20 as
	Reply to Zimmerman et al.: The space of single domain protein structures is continuous and highly connected [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 51. (22 December 2009), pp. E138-E138. by Jeffrey Skolnick, Michal Brylinski, Seung Y. Lee posted to structure protein graph_theory bioinformatics by sobolevnrm on 2009-12-23 21:49:39 as
	Short paths in protein structure space originate in graph structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 51. (22 December 2009), pp. E137-E137. by Michael Zimmermann, Fadi Towfic, Robert L. Jernigan, Andrzej Kloczkowski posted to structure protein graph_theory bioinformatics by sobolevnrm on 2009-12-23 21:49:04 as along with 1 person apaydin
	Actin, a Central Player in Cell Shape and Movement [My Copy] Science In Science, Vol. 326, No. 5957. (27 November 2009), pp. 1208-1212. by Thomas D. Pollard, John A. Cooper posted to review cytoskeleton by sobolevnrm on 2009-12-21 18:27:28 as along with 6 people and 1 group samjlord dumont danilov flbarroso eango okapi moernerlab
	Rapid equilibrium sampling initiated from nonequilibrium data [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 47. (24 November 2009), pp. 19765-19769. by Xuhui Huang, Gregory R. Bowman, Sergio Bacallado, Vijay S. Pande posted to molecular_simulation enhanced_sampling by sobolevnrm on 2009-12-21 18:26:51 as along with 4 people anuragsethi doktornoe apaydin Diego_Prada
	The Pfam protein families database [My Copy] Nucl. Acids Res., Vol. 38, No. suppl_1. (1 January 2010), pp. D211-222. by Robert D. Finn, Jaina Mistry, John Tate, et al.Penny Coggill, Andreas Heger, Joanne E. Pollington, O. Luke Gavin, Prasad Gunasekaran, Goran Ceric, Kristoffer Forslund, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman posted to protein database bioinformatics by sobolevnrm on 2009-12-21 18:24:09 as along with 2 people flbarroso neils
	Chemical Entities of Biological Interest: an update [My Copy] Nucl. Acids Res., Vol. 38, No. suppl_1. (1 January 2010), pp. D249-254. by Paula de Matos, Rafael Alcantara, Adriano Dekker, et al.Marcus Ennis, Janna Hastings, Kenneth Haug, Inmaculada Spiteri, Steve Turner, Christoph Steinbeck posted to ontology informatics cheminformatics bioinformatics by sobolevnrm on 2009-12-21 18:22:11 as along with 3 people and 1 group fgibson dullhunk pauladza Journal picks
	The Gene Ontology in 2010: extensions and refinements [My Copy] Nucl. Acids Res., Vol. 38, No. suppl_1. (1 January 2010), pp. D331-335. by The Gene Ontology Consortium posted to ontology bioinformatics by sobolevnrm on 2009-12-21 18:21:54 as along with 4 people and 2 groups Yanno H-Arrietaumn druvus dullhunk 8_01 Journal picks
	Stencil computation optimization and auto-tuning on state-of-the-art multicore architectures [My Copy] In SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing (2008), pp. 1-12. by Kaushik Datta, Mark Murphy, Vasily Volkov, et al.Samuel Williams, Jonathan Carter, Leonid Oliker, David Patterson, John Shalf, Katherine Yelick posted to mathematics finite_differences electrostatics by sobolevnrm on 2009-12-20 16:05:55 as
	Accurate Evaluation of Electrostatics for Macromolecules in Solution [My Copy] Methods and Applications of Analysis, Vol. 10, No. 2. (2003), pp. 309-328. by I-Liang Chern, Jian-Guo Liu, Wei-Cheng Wang posted to mathematics electrostatics by sobolevnrm on 2009-12-20 16:02:56 as
	A treatment of the volume and fluctuation term in Poisson's equation in the Debye-Hückel theory of strong electrolyte solutions [My Copy] Molecular Physics: An International Journal at the Interface Between Chemistry and Physics, Vol. 27, No. 1. (1974), pp. 225-236. by D. M. Burley, V. C. L. Hutson, C. W. Outhwaite posted to statistical_mechanics electrostatics beyond_mean_field by sobolevnrm on 2009-12-20 15:22:29 as
	Bayesian Detection of Intensity Changes in Single Molecule and Molecular Dynamics Trajectories [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Daniel L. Ensign, Vijay S. Pande posted to statistics molecular_dynamics by sobolevnrm on 2009-12-20 14:15:04 as along with 1 person and 1 group samjlord moernerlab
	Electrostatic potential of bilayer lipid membranes with the structural surface charge smeared perpendicular to the membrane-solution interface. An extension of the Gouy-Chapman diffuse double layer theory [My Copy] The Journal of Physical Chemistry, Vol. 85, No. 12. (1 June 1981), pp. 1762-1767. by Gregor Cevc, Sasa Svetina, Bostjan Zeks posted to electrostatics biomembranes by sobolevnrm on 2009-12-18 01:43:56 as along with 1 person sunnytov
	Fluorine in Protein Environments: A QM and MD Study [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 51. (24 December 2009), pp. 16400-16408. by Sergey A. Samsonov, Mario Salwiczek, Gerd Anders, Beate Koksch, M. Teresa Pisabarro posted to quantum_mechanics nmr by sobolevnrm on 2009-12-18 01:09:18 as
	Specificity and completion time distributions of biochemical processes [My Copy] The Journal of Chemical Physics, Vol. 131, No. 23. (2009), 235103. by Brian Munsky, Ilya Nemenman, Golan Bel posted to kinetics by sobolevnrm on 2009-12-17 22:44:48 as along with 2 people jjray paulymer
	PubChem BioAssays as a data source for predictive models [My Copy] Journal of Molecular Graphics and Modelling, Vol. 28, No. 5. (12 January 2010), pp. 420-426. by Bin Chen, David J. Wild posted to systems_biology drug_design data_mining by sobolevnrm on 2009-12-17 13:28:17 as along with 1 person paulymer
	Collaboratory for Structural Nanobiology (CSN), Nanoparticles Database [My Copy] Biophysical Journal, Vol. 96, No. 3. (February 2009), pp. 48a-48a. by Alvaro Gonzalez,, Fernando .. Gonzalez-Nilo,, Raul Cachau, posted to structure nanotechnology database by sobolevnrm on 2009-12-17 03:01:41 as
	Small-Angle Neutron Scattering Studies of Phospholipid−NSAID Adducts [My Copy] Langmuir, Vol. 0, No. 0. (0000) by Mohan B. Boggara, Ramanan Krishnamoorti posted to salicylate ligand-membrane_interactions biomembranes by sobolevnrm on 2009-12-16 20:51:18 as
	The Piezoelectric Outer Hair Cell [My Copy] In Vertebrate Hair Cells (2006), pp. 313-347. by William Brownell posted to outer_hair_cells by sobolevnrm on 2009-12-16 03:01:09 as
	Using monomolecular films to characterize lipid lateral interactions. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 398 (2007), pp. 41-58. by Rhoderick E. Brown, Howard L. Brockman posted to review biomembranes by sobolevnrm on 2009-12-16 02:59:02 as
	Surface polarization and flexoelectric effect [My Copy] Journal of Applied Physics, Vol. 69, No. 9. (1991), pp. 6343-6348. by G. Barbero, A. N. Chuvyrov, A. P. Krekhov, O. A. Scaldin posted to interfaces flexoelectric by sobolevnrm on 2009-12-16 02:41:01 as
	A Fast Variational Method for the Construction of Resolution Adaptive C-Smooth Molecular Surfaces. [My Copy] Computer methods in applied mechanics and engineering, Vol. 198, No. 21. (1 May 2009), pp. 1684-1690. by Chandrajit L. Bajaj, Guoliang Xu, Qin Zhang posted to solvation geometry electrostatics by sobolevnrm on 2009-12-16 02:28:44 as
	A minimal sequence code for switching protein structure and function. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 50. (15 December 2009), pp. 21149-21154. by Patrick A. Alexander, Yanan He, Yihong Chen, John Orban, Philip N. Bryan posted to protein_folding protein_engineering bioinformatics by sobolevnrm on 2009-12-15 21:45:09 as along with 7 people paulschlesinger bpcusack paulymer rabio mijam TRHvidsten biehl
	Procrustean rotation in concert with principal component analysis of molecular dynamics trajectories: Quantifying global and local differences between conformational samples [My Copy] The Journal of Chemical Physics, Vol. 131, No. 22. (2009), 225102. by Daniel G. Oblinsky, Bryan M. B. VanSchouwen, Heather L. Gordon, Stuart M. Rothstein posted to quasiharmonic_models molecular_simulation clustering by sobolevnrm on 2009-12-14 21:46:13 as along with 2 people anuragsethi agrossfield
	Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP. [My Copy] Cell, Vol. 90, No. 4. (22 August 1997), pp. 635-647. by S. Korolev, J. Hsieh, G. H. Gauss, T. M. Lohman, G. Waksman posted to structure helicase by sobolevnrm on 2009-12-14 21:41:32 as
	Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach. [My Copy] Journal of computational chemistry, Vol. 30, No. 14. (15 November 2009), pp. 2351-2357. by Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Siegfried Höfinger posted to software programming electrostatics by sobolevnrm on 2009-12-13 20:59:04 as along with 2 people ihaque RamuAnandakrishnan
	Automated Event Detection and Activity Monitoring in Long Molecular Dynamics Simulations [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 10. (13 October 2009), pp. 2595-2605. by Willy Wriggers, Kate A. Stafford, Yibing Shan, et al.Stefano Piana, Paul Maragakis, Kresten Lindorff-Larsen, Patrick J. Miller, Justin Gullingsrud, Charles A. Rendleman, Michael P. Eastwood, Ron O. Dror, David E. Shaw posted to quasiharmonic_models molecular_simulation molecular_dynamics clustering by sobolevnrm on 2009-12-13 00:29:41 as along with 4 people and 1 group paulymer anuragsethi jmccammon pmung McCammon
	Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204. by Duncan Hull, Steve R. Pettifer, Douglas B. Kell posted to software review by sobolevnrm on 2009-12-12 23:17:28 as along with 219 people and 19 groups gena dpf birukou voronov marekrud chriswillmott richardbickerton jrifon bsamal anitastreicher hmx danilov iskanbasal cgl colombet hughesro gbouma welliegirl suribe mordiano operon Horduna cyrille IgorP sachingarg claudiushauptmann ianturton tech4trainers radagabriel mfenner jalonsoarevalo StemCellWorkstation martica840527 agbiotec LinaMelo claudine acabezas aaltenburger sarelfa Anita13 Dannycoutinho tmar lucybuykx ltitodem dcombe christianholz schoeband dgovoni maren antonkratz mzkbnt girabbit mawds tlb56 sstose klexa n00c slr52 jandot applebyb timhubbard yangjustinc CameronNeylon heliopais sarabatts aldra Prlwrlczkwsky CPAP amyfyn vellino ulrichs malkav30 cristiangutierrez rockrescue victorantoniomtz Tita NancyAbigail Nembrod jclau clarabermudez tanyacovi6 jmohan polivares artaban421 nperoni eudominguezmartin nhoussos MARCOUNAM carelcad euanlawson furlong stevepettifer flipip23 virolog ZoeThomas pawelsobko tnhh kbkbk8 rickl nellapower mcentyre wujastyk beanformer msanchof2009 dmaweb bhengeveld jpgrolle wsumthai daforerog INK-SSCI-SCI quianominorleo tux2000 cogs AJCann robsyme anthrogeek lmichan sainsworth hkimura western4uk cybob10 kevinemamy akriesch williamgunn carlblesius Effie alhoori mikel_egana tilanka coldmeadow yas Tomste mseyfang fitzgeraldp2 fungal eduardod5 DavidG67 chenlc03 stempvoort lesikv jmueller17 sirexkat Koh akraemer thegoose kharke niallhaslam rdmagnuson JuanGiarrizzo pkonings jennialp lgibson rmasur GJNauta puchu rrbarb amarois mneeley dr_lee_xray IRTADOC zilvlan curthh mount_misery narroyo rdiaz treangen hpaces bumatic BerndBerndsen esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz cisevol ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag barry kristgy caseybrown Gaetan bcondon lynnefox nuin sdgsilvana ckai1 guhjy neils norris jago druvus emayorga GeeSharpMinor fgibson chad_davis Zephyrus leonardo dullhunk Parenting 2.0 Dentistry Zotero en español Journal picks Health_Informatics Herramientas20 Semantic-Social-Networks INK-SSCI-SCI@CiteuLike.org eLearning in Leicester mgh-lcs NaCTeM MEHTRadiology Département Hypermédia - Master NET JLab BergmanLab McCammon Poverty Alleviation from Access to Knowledge structural_bioinformatics Roswell Cancer Crosstalk
	Boxed Molecular Dynamics: A Simple and General Technique for Accelerating Rare Event Kinetics and Mapping Free Energy in Large Molecular Systems [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 52. (31 December 2009), pp. 16603-16611. by David R. Glowacki, Emanuele Paci, Dmitrii V. Shalashilin posted to molecular_dynamics enhanced_sampling by sobolevnrm on 2009-12-12 21:52:14 as along with 5 people and 1 group jmccammon agrossfield mfajer yangsiyang anuragsethi McCammon
	Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models [My Copy] PLoS ONE In PLoS ONE, Vol. 4, No. 12. (7 December 2009), e8070. by Xiaoning Qian,, Byung-Jun Yoon, posted to systems_biology bioinformatics by sobolevnrm on 2009-12-12 21:51:41 as along with 3 people and 1 group freesci CorinYeats phoenixzxl Orengo Group Journal Picks
	Visualization of the Encounter Ensemble of the Transient Electron Transfer Complex of Cytochrome c and Cytochrome c Peroxidase [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Qamar Bashir, Alexander N. Volkov, G. Matthias Ullmann, Marcellus Ubbink posted to protein-protein_interactions diffusion by sobolevnrm on 2009-12-12 21:49:14 as
	Modulation of the Cytochrome P450 Reductase Redox Potential by the Phospholipid Bilayer [My Copy] Biochemistry In Biochemistry, Vol. 0, No. 0. (0000) by Aditi Das, Stephen G. Sligar posted to biomembranes solvation redox_potentials electrostatics by sobolevnrm on 2009-12-12 21:47:32 as along with 1 person paulschlesinger
	The gates of ion channels and enzymes [My Copy] Trends in Biochemical Sciences (18 November 2009) by Huan-Xiang Zhou, J. Andrew McCammon posted to molecular_dynamics kinetics by sobolevnrm on 2009-12-12 20:32:16 as along with 1 person barry

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