sobolevnrm's mathematics [at least 200 articles] Export Sort

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	High-fidelity geometric modeling for biomedical applications [My Copy] Finite Elements in Analysis and Design, Vol. 44, No. 11. (July 2008), pp. 715-723. by Z. Yu, M. Holst, J. Andrewmccammon posted to mathematics geometry finite_element electrostatics by sobolevnrm on 2009-12-26 03:01:34 as
	A boundary element method for molecular electrostatics with electrolyte effects [My Copy] Journal of Computational Chemistry, Vol. 11, No. 9. (1990), pp. 1080-1086. by Byung J. Yoon, A. M. Lenhoff posted to mathematics electrostatics boundary_elements by sobolevnrm on 2009-12-26 02:59:00 as along with 2 people stephenbond dmitry_s_yershov
	Towards Optimal Multi-level Tiling for Stencil Computations [My Copy] Parallel and Distributed Processing Symposium, 2007. IPDPS 2007. IEEE International In Parallel and Distributed Processing Symposium, 2007. IPDPS 2007. IEEE International (30 March 2007), pp. 1-10. by Lakshminarayanan Renganarayana, Manjukumar Harthikote-Matha, Rinku Dewri, Sanjay Rajopadhye posted to programming mathematics by sobolevnrm on 2009-12-25 02:25:41 as
	Wavelet Methods for Fast Resolution of Elliptic Problems [My Copy] SIAM Journal on Numerical Analysis, Vol. 29, No. 4. (1992), pp. 965-986. by Stephane Jaffard posted to wavelets mathematics by sobolevnrm on 2009-12-24 18:19:36 as
	Stencil computation optimization and auto-tuning on state-of-the-art multicore architectures [My Copy] In SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing (2008), pp. 1-12. by Kaushik Datta, Mark Murphy, Vasily Volkov, et al.Samuel Williams, Jonathan Carter, Leonid Oliker, David Patterson, John Shalf, Katherine Yelick posted to mathematics finite_differences electrostatics by sobolevnrm on 2009-12-20 16:05:55 as
	Accurate Evaluation of Electrostatics for Macromolecules in Solution [My Copy] Methods and Applications of Analysis, Vol. 10, No. 2. (2003), pp. 309-328. by I-Liang Chern, Jian-Guo Liu, Wei-Cheng Wang posted to mathematics electrostatics by sobolevnrm on 2009-12-20 16:02:56 as
	High-Order Narrow Stencil Finite-Difference Approximations of Second-Order Derivatives Involving Variable Coefficients [My Copy] SIAM Journal on Scientific Computing, Vol. 31, No. 6. (Jan 2009), pp. 4222-4243. by Ramji Kamakoti, Carlos Pantano posted to finite_differences mathematics by sobolevnrm on 2009-11-30 12:48:27 as
	Mean Field Approximation in Conformation Dynamics [My Copy] Multiscale Modeling, Vol. 8, No. 1. (Jan 2009), pp. 254-268. by G. Friesecke, O. Junge, P. Koltai posted to mathematics by sobolevnrm on 2009-11-30 12:48:26 as along with 2 people paulymer anuragsethi
	Performance of Nonlinear Finite-Difference Poisson−Boltzmann Solvers [My Copy] Journal of Chemical Theory and Computation by Qin Cai, Meng J. Hsieh, Jun Wang, Ray Luo posted to finite_differences mathematics electrostatics by sobolevnrm on 2009-11-16 13:09:19 as
	A first-order system least-squares finite element method for the Poisson-Boltzmann equation [My Copy] Journal of Computational Chemistry by Stephen D. Bond, J. H. Chaudhry, Eric C. Cyr, Luke N. Olson posted to finite_element solvation mathematics electrostatics by sobolevnrm on 2009-11-12 14:10:16 as
	Using the minimum description length principle for global reconstruction of dynamic systems from noisy time series [My Copy] Phys. Rev. E, Vol. 80, No. 4. (Oct 2009) by Ya, D. N. Mukhin, E. M. Loskutov, A. M. Feigen posted to quasiharmonic-models mathematics kinetics by sobolevnrm on 2009-11-02 12:47:50 as
	“Reverse-Schur” Approach to Optimization with Linear PDE Constraints: Application to Biomolecule Analysis and Design [My Copy] Journal of Chemical Theory and Computation (2009) by Jaydeep P. Bardhan, Michael D. Altman, B. Tidor, Jacob K. White posted to drug_design solvation optimization mathematics electrostatics by sobolevnrm on 2009-11-02 12:47:50 as
	Breaking the Curse of Dimensionality, Or How to Use SVD in Many Dimensions [My Copy] SIAM Journal on Scientific Computing, Vol. 31, No. 5. (Jan 2009), pp. 3744-3759. by I. V. Oseledets, E. E. Tyrtyshnikov posted to review quasiharmonic-models mathematics by sobolevnrm on 2009-11-02 12:47:50 as along with 1 person anuragsethi
	Remarks on Drift Estimation for Diffusion Processes [My Copy] Multiscale Modeling, Vol. 8, No. 1. (Jan 2009), pp. 69-95. by Yvo Pokern, Andrew M. Stuart, Eric V. Eijnden posted to statistics molecular-dynamics mathematics diffusion by sobolevnrm on 2009-11-02 12:47:50 as
	A Finite Element Method for Elliptic Equations on Surfaces [My Copy] SIAM Journal on Numerical Analysis, Vol. 47, No. 5. (Jan 2009), pp. 3339-3358. by Maxim A. Olshanskii, Arnold Reusken, Jorg Grande posted to finite_element mathematics diffusion by sobolevnrm on 2009-11-02 12:47:49 as
	Trace formulae and spectral statistics for discrete Laplacians on regular graphs [My Copy] Journal of Physics A: Mathematical and Theoretical, Vol. 42 (Oct 2009) by Idan Oren, Amit Godel, Uzy Smilansky posted to mathematics by sobolevnrm on 2009-10-31 21:32:14 as
	A Quick Guide to Teaching R Programming to Computational Biology Students [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000482. by Stephen J. Eglen posted to teaching statistics software programming mathematics by sobolevnrm on 2009-10-31 00:10:53 as along with 65 people and 4 groups PabloMarin idonaldson bsamal nuin kaliczp maren ltitodem zchen75 artaban421 natstreet jasonn tomhebbron psique Stew eshirdel guhjy polivares ajw fishtank diamantis fastjoe23 kshameer daveGerrard hrogers JoeBanks cisevol srijit hwright Ayest VGreiff welliegirl asadrahman rdiaz ptrobajo heliopais coffeerv Vincent_Rouilly marekrud tnhh barry ansobol Zephyrus walshtp bertelsen fgibson pkonings Borelli klauso dlizcano dswan skembel djkt jclau lwaldron phoenixzxl timhubbard AJCann thegoose dullhunk brianb neils silberbauer daforerog ppgardne druvus Bioinformatics - CRUK BergmanLab eLearning in Leicester Journal picks
	The black-box fast multipole method [My Copy] Journal of Computational Physics, Vol. 228, No. 23. (10 December 2009), pp. 8712-8725. by William Fong, Eric Darve posted to mathematics integral_equations electrostatics by sobolevnrm on 2009-10-26 11:37:09 as
	Bayesian Single-Exponential Kinetics in Single-Molecule Experiments and Simulations [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 36. (10 September 2009), pp. 12410-12423. by Daniel L. Ensign, Vijay S. Pande posted to molecular_dynamics mathematics kinetics by sobolevnrm on 2009-10-16 13:42:25 as along with 2 people and 1 group paulymer samjlord moernerlab
	Solution of the Phase Problem in the Theory of Structure Determination of Crystals from X-Ray Diffraction Experiments [My Copy] Physical Review Letters, Vol. 103, No. 7. (2009), 075501. by Emil Wolf posted to structure mathematics experimental_methodology by sobolevnrm on 2009-10-14 12:34:31 as
	Tensor Decompositions and Applications [My Copy] SIAM Review, Vol. 51, No. 3. (2009), pp. 455-500. by Tamara G. Kolda, Brett W. Bader posted to statistics review mathematics by sobolevnrm on 2009-10-07 12:45:50 as along with 2 people nliu82 egozi
	Boltzmann's Dilemma: An Introduction to Statistical Mechanics via the Kac Ring [My Copy] SIAM Review, Vol. 51, No. 3. (2009), pp. 613-635. by Georg A. Gottwald, Marcel Oliver posted to teaching statistical_mechanics review mathematics by sobolevnrm on 2009-10-07 12:45:38 as
	Bayesian comparison of Markov models of molecular dynamics with detailed balance constraint [My Copy] The Journal of Chemical Physics, Vol. 131, No. 4. (2009), 045106. by Sergio Bacallado, John D. Chodera, Vijay Pande posted to molecular_dynamics mathematics kinetics by sobolevnrm on 2009-10-01 13:14:05 as along with 3 people and 1 group anuragsethi whitead dlimmer Jiang Research Group
	Wavelet BEM on molecular surfaces: parametrization and implementation [My Copy] Computing, Vol. 86, No. 1. (1 September 2009), pp. 1-22. by Helmut Harbrecht, Maharavo Randrianarivony posted to solvation mathematics electrostatics boundary_element by sobolevnrm on 2009-10-01 13:13:49 as
	Nodal discontinuous Galerkin methods on graphics processors [My Copy] Journal of Computational Physics, Vol. 228, No. 21. (20 November 2009), pp. 7863-7882. by A. Klöckner, T. Warburton, J. Bridge, J. S. Hesthaven posted to programming mathematics finite_element by sobolevnrm on 2009-09-25 13:03:30 as
	The probability of an encounter of two Brownian particles before escape [My Copy] Journal of Physics A: Mathematical and Theoretical, Vol. 42, No. 31. (2009), 315210. by D. Holcman, I. Kupka posted to statistical_mechanics mathematics kinetics diffusion by sobolevnrm on 2009-08-19 12:54:57 as
	Combinatorial Optimization of Matrix-Vector Multiplication in Finite Element Assembly [My Copy] SIAM Journal on Scientific Computing, Vol. 31, No. 4. (2009), 2960. by Michael M. Wolf, Michael T. Heath posted to finite_element mathematics programming by sobolevnrm on 2009-08-10 13:03:46 as
	The Quasi-Newton Least Squares Method: A New and Fast Secant Method Analyzed for Linear Systems [My Copy] SIAM Journal on Numerical Analysis, Vol. 47, No. 3. (2009), pp. 2347-2368. by Rob Haelterman, Joris Degroote, Dirk Van Heule, Jan Vierendeels posted to mathematics systems_biology by sobolevnrm on 2009-08-10 13:02:29 as
	Guidance for Choosing Multigrid Preconditioners for Systems of Elliptic Partial Differential Equations [My Copy] SIAM Journal on Scientific Computing, Vol. 31, No. 4. (2009), pp. 2803-2831. by B. Lee posted to mathematics by sobolevnrm on 2009-08-10 13:02:16 as
	The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures [My Copy] The Journal of Chemical Physics, Vol. 131, No. 2. (2009), 024103. by Vinod Krishna, Will G. Noid, Gregory A. Voth posted to mathematics multiscale statistical_mechanics by sobolevnrm on 2009-08-10 13:01:50 as along with 2 people tomweingarten agrossfield
	Computing generalized Langevin equations and generalized Fokker–Planck equations [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 27. (7 July 2009), pp. 10884-10889. by Eric Darve, Jose Solomon, Amirali Kia posted to diffusion mathematics by sobolevnrm on 2009-08-10 13:01:27 as along with 2 people chiufanlee jjray
	A Cartesian treecode for screened coulomb interactions [My Copy] Journal of Computational Physics, Vol. 228, No. 10. (01 June 2009), pp. 3858-3868. by Peijun Li, Hans Johnston, Robert Krasny posted to electrostatics mathematics molecular_simulation by sobolevnrm on 2009-07-17 12:52:57 as
	An inverse problem for a heat equation with piecewise-constant thermal conductivity [My Copy] Journal of Mathematical Physics, Vol. 50, No. 6. (2009), 063512. by N. S. Hoang, A. G. Ramm posted to diffusion electrostatics mathematics by sobolevnrm on 2009-07-17 12:52:49 as
	Diffusion on a Sphere with Localized Traps: Mean First Passage Time, Eigenvalue Asymptotics, and Fekete Points [My Copy] SIAM Journal on Applied Mathematics, Vol. 70, No. 1. (2009), pp. 302-332. by Daniel Coombs, Ronny Straube, Michael Ward posted to diffusion mathematics by sobolevnrm on 2009-06-23 14:05:03 as
	Eigenvalues of the adjacency and Laplacian matrices for modified regular structural models [My Copy] Communications in Numerical Methods in Engineering, Vol. 9999, No. 9999. (2009), n/a. by A. Kaveh, H. Rahami posted to graph_theory mathematics quasiharmonic_models by sobolevnrm on 2009-06-18 13:43:41 as
	Radially Projected Finite Elements [My Copy] SIAM Journal on Scientific Computing, Vol. 31, No. 3. (2009), pp. 2368-2385. by Amnon J. Meir, Necibe Tuncer posted to finite_element diffusion mathematics by sobolevnrm on 2009-06-09 12:27:50 as along with 1 group baker-group
	An Adaptive Fast Multipole Boundary Element Method for Poisson−Boltzmann Electrostatics [My Copy] Journal of Chemical Theory and Computation, Vol. 0, No. 0. (0000) by Benzhuo Lu, Xiaolin Cheng, Jingfang Huang, Andrew J. Mccammon posted to boundary_element electrostatics mathematics by sobolevnrm on 2009-05-26 12:44:44 as along with 1 group baker-group
	Polynomial Preconditioners for Conjugate Gradient Calculations [My Copy] SIAM Journal on Numerical Analysis, Vol. 20, No. 2. (1983), pp. 362-376. by Olin G. Johnson, Charles A. Micchelli, George Paul posted to mathematics by sobolevnrm on 2009-05-13 12:11:35 as along with 1 group baker-group
	Adaptive polynomial preconditioning for the conjugate gradient algorithm [My Copy] Applied Parallel Computing Computations in Physics, Chemistry and Engineering Science In Applied Parallel Computing Computations in Physics, Chemistry and Engineering Science (1996), pp. 189-198. by Martyn Field posted to mathematics by sobolevnrm on 2009-05-13 12:11:26 as along with 1 group baker-group
	Adaptive polynomial preconditioning for hermitian indefinite linear systems [My Copy] BIT Numerical Mathematics, Vol. 29, No. 4. (1 December 1989), pp. 583-609. by Steven F. Ashby, Thomas A. Manteuffel, Paul E. Saylor posted to mathematics by sobolevnrm on 2009-05-13 12:11:18 as along with 1 group baker-group
	Practical Use of Polynomial Preconditionings for the Conjugate Gradient Method [My Copy] SIAM Journal on Scientific and Statistical Computing, Vol. 6, No. 4. (1985), pp. 865-881. by Youcef Saad posted to mathematics by sobolevnrm on 2009-05-13 12:11:11 as along with 1 group baker-group
	Diffusion-controlled reaction on an elliptic site [My Copy] The Journal of Chemical Physics, Vol. 130, No. 17. (2009), 176103. by William Strieder posted to diffusion mathematics by sobolevnrm on 2009-05-08 12:26:57 as along with 1 group baker-group
	The Reaction-Diffusion Master Equation as an Asymptotic Approximation of Diffusion to a Small Target [My Copy] SIAM Journal on Applied Mathematics, Vol. 70, No. 1. (2009), pp. 77-111. by Samuel A. Isaacson posted to diffusion mathematics by sobolevnrm on 2009-05-07 12:58:33 as along with 1 person and 1 group ddcttrl baker-group
	$\ell_1$ Trend Filtering [My Copy] SIAM Review, Vol. 51, No. 2. (2009), pp. 339-360. by Seung J. Kim, Kwangmoo Koh, Stephen Boyd, Dimitry Gorinevsky posted to mathematics review statistics by sobolevnrm on 2009-05-07 12:58:20 as along with 1 group baker-group
	Hat Guessing Games [My Copy] SIAM Review, Vol. 51, No. 2. (2009), pp. 399-413. by Steve Butler, Mohammad T. Hajiaghayi, Robert D. Kleinberg, Tom Leighton posted to mathematics review by sobolevnrm on 2009-05-07 12:58:09 as along with 1 group baker-group
	The subspace iteration method in protein normal mode analysis [My Copy] Journal of Computational Chemistry, Vol. 31, No. 1. (2010), pp. 66-74. by Reza S. Sedeh, Mark Bathe, Klaus-Jürgen Bathe posted to mathematics quasiharmonic_models by sobolevnrm on 2009-05-01 12:13:58 as along with 1 person and 1 group agrossfield baker-group
	Distributing many points on a sphere [My Copy] The Mathematical Intelligencer, Vol. 19, No. 1. (1 December 1997), pp. 5-11. by E. Saff, A. Kuijlaars posted to electrostatics geometry mathematics solvation by sobolevnrm on 2009-04-29 12:27:28 as along with 1 group baker-group
	A stochastic spectral analysis of transcriptional regulatory cascades [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6529-6534. by Aleksandra M. Walczak, Andrew Mugler, Chris H. Wiggins posted to graph_theory mathematics systems_biology by sobolevnrm on 2009-04-23 12:30:41 as along with 5 people and 1 group roys erel10 kshundyak jjray bais baker-group
	On removal of charge singularity in Poisson--Boltzmann equation [My Copy] The Journal of Chemical Physics, Vol. 130, No. 14. (2009), 145101. by Qin Cai, Jun Wang, Hong K. Zhao, Ray Luo posted to electrostatics mathematics solvation by sobolevnrm on 2009-04-16 12:34:43 as along with 1 person and 1 group onufriev baker-group
	A multi-time-scale analysis of chemical reaction networks: I. Deterministic systems [My Copy] Journal of Mathematical Biology by Chang Lee, Hans Othmer posted to kinetics mathematics multiscale systems_biology by sobolevnrm on 2009-04-15 12:11:57 as along with 1 group baker-group

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