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sobolevnrm's nucleicacids [22 articles]

Recent papers added to sobolevnrm's library classified by the tag nucleicacids. You can also see everyone's nucleicacids.
  • Electrostatic Interactions Guide the Active Site Face of a Structure-Specific Ribonuclease to Its RNA Substrate
    Biochemistry, Vol. 47, No. 34. (2008), pp. 8912-8918.
    by Matthew J Plantinga, Alexei V Korennykh, Joseph A Piccirilli, Carl C Correll
    posted to protein-nucleicacidinteractions nucleicacids electrostatics by sobolevnrm on 2008-09-04 14:04:28 as read
  • Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA
    Nucleic Acids Research, Vol. 36, No. 12. (2008), pp. 4118-4127.
    by Isabelle Bonnet, Andreas Biebricher, Pierre L Porte, Claude Loverdo, Olivier Benichou, Raphael Voituriez, Christophe Escude, Wolfgang Wende, Alfred Pingoud, Pierre Desbiolles
    posted to protein-nucleicacidinteractions nucleicacids diffusion by sobolevnrm on 2008-09-02 12:34:08 as **
  • Comparison of DNA hydration patterns obtained using two distinct computational methods, molecular dynamics simulation and three-dimensional reference interaction site model theory
    The Journal of Chemical Physics, Vol. 128, No. 18. (2008)
    by Yoshiteru Yonetani, Yutaka Maruyama, Fumio Hirata, Hidetoshi Kono
    posted to beyondmeanfield electrostatics integralequation nucleicacids solvation statisticalmechanics by sobolevnrm on 2008-08-29 13:42:11 as **
  • Electrostatic Free Energy Landscapes for DNA Helix Bending
    Biophysical Journal, Vol. 94, No. 8. (2008)
    by Zhi-Jie Tan, Shi-Jie Chen
    posted to beyondmeanfield electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:42:09 as **
  • Efficient sampling of ion motions in molecular dynamics simulations on DNA: Variant Hamiltonian replica exchange method
    Chemical Physics Letters, Vol. 454, No. 4-6. (2008)
    by Donghong Min, Hongzhi Li, Guohui Li, Bernd A Berg, Marcia O Fenley, Wei Yang
    posted to beyondmeanfield electrostatics molecularsimulation nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:42:09 as **
  • Evaluation of Ion Binding to DNA Duplexes Using a Size-Modified Poisson-Boltzmann Theory
    Biophysical Journal, Vol. 93, No. 9. (2007)
    by Vincent B Chu, Yu Bai, Jan Lipfert, Daniel Herschlag, Sebastian Doniach
    posted to beyondmeanfield electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:42:08 as **
  • Counterion-counterion correlation in the double layer around cylindrical polyions: Counterion size and valency effects
    Journal of Chemical Physics, Vol. 127 (2007)
    by J Piñero, LB Bhuiyan, J Reščič, V Vlachy
    posted to beyondmeanfield electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:42:08 as **
  • notes Polymorphism of DNAâanionic liposome complexes reveals hierarchy of ion-mediated interactions
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 32. (2005)
    by H Liang, D Harries, GCL Wong
    posted to beyondmeanfield biomembranes electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:42:03 as **
  • notes Monte Carlo simulation of an inhomogeneous dielectric continuum model for B-DNA
    Physical Chemistry Chemical Physics, Vol. 7, No. 19. (2005)
    by S Grandison, R Penfold, Vanden-Broeck
    posted to beyondmeanfield electrostatics nucleicacids solvation statisticalmechanics by sobolevnrm on 2008-08-29 13:42:03 as **
  • notes Incomplete Ion Dissociation Underlies the Weakened Attraction between DNA Helices at High Spermidine Concentrations
    Biophysical Journal, Vol. 89, No. 3. (2005)
    by J Yang, DC Rau
    posted to beyondmeanfield electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:42:03 as **
  • notes Probing counterion modulated repulsion and attraction between nucleic acid duplexes in solution
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 4. (2005)
    by Y Bai, R Das, IS Millett, D Herschlag, S Doniach
    posted to beyondmeanfield electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:42:01 as **
  • Structure and interactions of biological helices
    Reviews of Modern Physics, Vol. 79 (2007)
    by AA Kornyshev, DJ Lee, S Leikin, A Wynveen
    posted to beyondmeanfield electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:42:00 as **
  • notes DNA condensation and redissolution: interaction between overcharged DNA molecules
    Journal of Physics: Condensed Matter, Vol. 17, No. 20. (2005)
    by E Allahyarov, G Gompper, H Lã¶wen
    posted to beyondmeanfield electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:42:00 as **
  • notes Attractive Forces between Cation Condensed DNA Double Helices
    Biophys. J., Vol. 94, No. 12. (2008)
    by Brian A Todd, Adrian V Parsegian, Akira Shirahata, TJ Thomas, Donald C Rau
    posted to beyondmeanfield electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:41:58 as **
  • Attractive Forces between Cation Condensed DNA Double Helices
    Biophysical Journal, Vol. 94, No. 12. (2008)
    by Brian A Todd, Adrian V Parsegian, Akira Shirahata, TJ Thomas, Donald C Rau
    posted to beyondmeanfield electrostatics nucleicacids by sobolevnrm on 2008-08-29 13:41:58 as **
  • Assessing the performance of implicit solvation models at a nucleic acid surface
    Physical Chemistry Chemical Physics, Vol. 10 (2008), pp. 4889-902.
    by F Dong, JA Wagoner, NA Baker
    posted to electrostatics nonpolar nucleicacids solvation by sobolevnrm on 2008-08-28 13:07:41 as read
  • Quantitative and Comprehensive Decomposition of the Ion Atmosphere around Nucleic Acids
    Journal of the American Chemical Society, Vol. 129, No. 48. (2007)
    by Y Bai, M Greenfeld, KJ Travers, VB Chu, J Lipfert, D Herschlag
    posted to electrostatics nucleicacids solvation by sobolevnrm on 2008-08-15 13:48:18 as read
  • RNA dynamics: it is about time
    Current Opinion in Structural Biology, Vol. 18, No. 3. (2008)
    by Hashim M Al-Hashimi, Nils G Walter
    posted to moleculardynamics nucleicacids by sobolevnrm on 2008-08-13 21:16:00 as read
  • Comparison of DNA hydration patterns obtained using two distinct computational methods, molecular dynamics simulation and three-dimensional reference interaction site model theory
    The Journal of Chemical Physics, Vol. 128, No. 18. (2008)
    by Yoshiteru Yonetani, Yutaka Maruyama, Fumio Hirata, Hidetoshi Kono
    posted to electrostatics integralequation nucleicacids solvation statisticalmechanics by sobolevnrm on 2008-08-09 22:39:23 as read
  • Electrostatics of B-DNA in NaCl and CaCl2 Solutions: Ion Size, Interionic Correlation, and Solvent Dielectric Saturation Effects
    Journal of Physical Chemistry B, Vol. 112, No. 30. (2008), pp. 8955-8965.
    by Sergei Gavryushov
    posted to electrostatics nucleicacids by sobolevnrm on 2008-08-07 12:30:44 as read
  • RNA recognition motifs: boring? Not quite
    Current Opinion in Structural Biology, Vol. 18, No. 3. (2008), pp. 290-298.
    by Antoine Cléry, Markus Blatter, Frédéric HT Allain
    posted to nikr nucleicacids review by sobolevnrm on 2008-08-01 12:50:47 as read
  • Attractive Forces between Cation Condensed DNA Double Helices
    Biophysical Journal, Vol. 94, No. 12. (2008), pp. 4775-4782.
    by Brian A Todd, Adrian V Parsegian, Akira Shirahata, TJ Thomas, Donald C Rau
    posted to electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-01 12:50:47 as read
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