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sobolevnrm's watchlist [1000+ articles]

Recent papers matching sobolevnrm's watchlist criteria
  • Chapter 23 Dissection of the BCL-2 Family Signaling Network with Stabilized alpha-Helices of BCL-2 Domains.
    Methods in enzymology, Vol. 446 (2008), pp. 387-408.
    by K Pitter, F Bernal, J Labelle, LD Walensky
    posted to stapled peptide bid bax activation by paulschlesinger on 2008-07-25 20:59:47 as **
  • The Croonian lecture 2006. Structure of the living cell.
    Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 363, No. 1502. (27 July 2008), pp. 2379-2391.
    by ID Campbell
    posted to review_cellstructure by aqeel on 2008-07-25 09:41:41 as **
  • Recognition-induced conformational changes in protein-protein docking.
    Current pharmaceutical biotechnology, Vol. 9, No. 2. (April 2008), pp. 77-86.
    by MF Lensink, R Méndez
    posted to review_docking by aqeel on 2008-07-25 09:25:54 as **
  • Protein−Ligand Docking Accounting for Receptor Side Chain and Global Flexibility in Normal Modes: Evaluation on Kinase Inhibitor Cross Docking
    J. Med. Chem., Vol. 51, No. 12. (26 June 2008), pp. 3499-3506.
    by Andreas May, Martin Zacharias
    posted to enm_application_docking by aqeel on 2008-07-25 09:16:38 as ** along with 1 person higueruelo
  • From the first protein structures to our current knowledge of protein folding: delights and scepticisms.
    Nature reviews. Molecular cell biology (25 June 2008)
    by Alan R R Fersht
    posted to protein folding by paulschlesinger on 2008-07-24 20:45:02 as ** along with 2 people aalibes dullhunk
  • Differential scanning calorimetry.
    Methods in cell biology, Vol. 84 (2008), pp. 115-141.
    by CH Spink
    posted to scanning dsc calorimentry by paulschlesinger on 2008-07-23 20:53:19 as **
  • Thermal unfolding and aggregation of actin
    FEBS Journal, Vol. 9999, No. 9999. (2008)
    by Dmitrii I Levitsky, Anastasiya V Pivovarova, Valeria V Mikhailova, Olga P Nikolaeva
    posted to proteins dsc calorimetry actin by paulschlesinger on 2008-07-23 20:50:25 as **
  • A Chaotic Pore Model of Polypeptide Antibiotic Action
    Biophys. J., Vol. 94, No. 5. (1 March 2008), pp. 1549-1550.
    by Paul H Axelsen
    posted to pore model chaotic cercropin by paulschlesinger on 2008-07-23 17:49:03 as **
  • Directionally negative friction: A method for enhanced sampling of rare event kinetics
    Journal of Chemical Physics (2008)
    by J Macfadyen, J Wereszczynski, I Andricioaei
    posted to time_correlation_function md_simulation langevin_dynamics kinetics by jmccammon to the group McCammon on 2008-07-23 01:44:52 as read
  • A Fluorescence-Based Technique to Construct Size Distributions from Single-Object Measurements: Application to the Extrusion of Lipid Vesicles
    Biophys. J., Vol. 95, No. 3. (1 August 2008), pp. 1176-1188.
    by Andreas H Kunding, Michael W Mortensen, Sune M Christensen, Dimitrios Stamou
    posted to vesicle size extrusion distribution by paulschlesinger on 2008-07-23 01:18:54 as **
  • Sizing the Bacillus anthracis PA63 Channel with Nonelectrolyte Poly(Ethylene Glycols)
    Biophys. J., Vol. 95, No. 3. (1 August 2008), pp. 1157-1164.
    by Brian J Nablo, Kelly M Halverson, Joseph W Robertson, Tam L Nguyen, Rekha G Panchal, Rick Gussio, Sina Bavari, Oleg V Krasilnikov, John J Kasianowicz
    posted to size pore peg channel block by paulschlesinger on 2008-07-23 01:09:22 as **
  • Dynamics of the Preprotein Translocation Channel of the Outer Membrane of Mitochondria
    Biophys. J., Vol. 95, No. 3. (1 August 2008), pp. 1511-1522.
    by Melissa Poynor, Reiner Eckert, Stephan Nussberger
    posted to transport translocon protein omm by paulschlesinger on 2008-07-23 01:08:02 as **
  • Liquid Ordered and Gel Phases of Lipid Bilayers: Fluorescent Probes Reveal Close Fluidity but Different Hydration
    Biophys. J., Vol. 95, No. 3. (1 August 2008), pp. 1217-1225.
    by Gora M'baye, Yves Mely, Guy Duportail, Andrey S Klymchenko
    posted to phases membrane fluidity by paulschlesinger on 2008-07-23 01:04:53 as **
  • Sequence Ontology annotation guide: Conference Papers
    Comp. Funct. Genomics, Vol. 5, No. 8. (December 2004), pp. 642-647.
    by Karen Eilbeck, Suzanna E Lewis
    posted to ontology bioinformatics by sobolevnrm to the group baker-group on 2008-07-22 12:21:37 as read along with 1 person vlachmore
  • Membrane Interactions of Cell-Penetrating Peptides Probed by Tryptophan Fluorescence and Dichroism Techniques: Correlations of Structure to Cellular Uptake
    Biochemistry, Vol. 45, No. 24. (20 June 2006), pp. 7682-7692.
    by CEB Caesar, EK Esbjorner, P Lincoln, B Norden
    posted to tryptophan peptide penetration membrane by paulschlesinger on 2008-07-21 18:04:48 as ** along with 1 person dereich
  • Bad, a heterodimeric partner for Bcl-xL and Bcl-2, displaces bax and promotes cell death
    Cell, Vol. 80, No. 2. (27 January 1995), pp. 285-291.
    by Elizabeth Yang, Jiping Zha, Jennifer Jockel, Lawrence H Boise, Craig B Thompson, Stanley J Korsmeyer
    posted to displacement bax bad apoptosis by paulschlesinger on 2008-07-21 01:43:59 as **
  • Theory of hydrogen bonded chains in bioenergetics
    The Journal of Chemical Physics, Vol. 72, No. 7. (1980), pp. 3959-3971.
    by JF Nagle, M Mille, HJ Morowitz
    posted to thermodynamics nrl hydrogen examples eneregetics chains bond by paulschlesinger on 2008-07-21 01:36:29 as *****
  • Three Novel Bid Proteins Generated by Alternative Splicing of the Human Bid Gene
    J. Biol. Chem., Vol. 279, No. 4. (23 January 2004), pp. 2846-2855.
    by Stephen A Renshaw, Clare E Dempsey, Frances A Barnes, Stephanie M Bagstaff, Steven K Dower, Colin D Bingle, Moira K Whyte
    posted to splicing bid anternative by paulschlesinger on 2008-07-20 02:51:32 as **
  • Potential of Mean Force and pKa Profile Calculation for a Lipid Membrane-Exposed Arginine Side Chain
    J. Phys. Chem. B (18 July 2008)
    by Libo Li, Igor Vorobyov, Toby W Allen
    posted to potential membrane mean force arginine by paulschlesinger on 2008-07-20 02:17:36 as **
  • Classical and Quantum Gibbs Free Energies and Phase Behavior of Water Using Simulation and Cell Theory
    J. Phys. Chem. B (19 July 2008)
    by Martin Klefas-Stennett, Richard H Henchman
    posted to water phases free energy by paulschlesinger on 2008-07-20 02:16:28 as **
  • Allosteric regulation and catalysis emerge via a common route
    Nat Chem Biol, Vol. 4, No. 8. (2008), pp. 474-482.
    by Nina M Goodey, Stephen J Benkovic
    posted to catalysis allostery by paulschlesinger on 2008-07-20 02:14:39 as **
  • Cooperativity in macromolecular assembly
    Nat Chem Biol, Vol. 4, No. 8. (2008), pp. 458-465.
    by James R Williamson
    posted to macromolecules cooperativity assembly by paulschlesinger on 2008-07-20 02:13:16 as ** along with 1 person phoenixzxl
  • The ABCs of trans(porter) inhibition
    Nat Chem Biol, Vol. 4, No. 8. (2008), pp. 454-455.
    by Rachelle Gaudet
    posted to transporter inhibition abc by paulschlesinger on 2008-07-20 02:12:05 as **
  • Cutting the forest to see a single tree?
    Nat Chem Biol, Vol. 4, No. 8. (2008), pp. 440-443.
    by Antoine M van Oijen
    posted to single molecule evaluation by paulschlesinger on 2008-07-20 02:09:10 as **
  • Cooperativity and biological complexity
    Nat Chem Biol, Vol. 4, No. 8. (2008), pp. 435-439.
    by Adrian Whitty
    posted to range cooperativity biology by paulschlesinger on 2008-07-20 02:06:51 as ** along with 1 person phoenixzxl
  • Capturing cooperativity
    Nat Chem Biol, Vol. 4, No. 8. (2008), pp. 433-433.
    posted to terminology cooperativity by paulschlesinger on 2008-07-20 02:05:07 as **
  • Peptides derived from BH3 domains of Bcl-2 family members: a comparative analysis of inhibition of Bcl-2, Bcl-x(L) and Bax oligomerization, induction of cytochrome c release, and activation of cell death.
    Biochemistry, Vol. 41, No. 30. (30 July 2002), pp. 9485-9495.
    by S Shangary, DE Johnson
    posted to tumor peptide over expression bh3 bclxl by paulschlesinger on 2008-07-19 00:20:43 as **
  • Anti-apoptotic Bcl-X(L) protein in complex with BH3 peptides of pro-apoptotic Bak, Bad, and Bim proteins: Comparative molecular dynamics simulations.
    Proteins (1 May 2008)
    by Dilraj Lama, Ramasubbu Sankararamakrishnan
    posted to simulation peptides bim bh3 bclxl bak bad by paulschlesinger on 2008-07-19 00:19:08 as **
  • Hydrophile scanning as a complement to alanine scanning for exploring and manipulating protein-protein recognition: Application to the Bim BH3 domain
    Protein Sci (8 May 2008), ps.032896.107.
    by Melissa D Boersma, Jack D Sadowsky, York A Tomita, Samuel H Gellman
    posted to recognition protein bim by paulschlesinger on 2008-07-19 00:17:55 as **
  • Cargo transport: molecular motors navigate a complex cytoskeleton
    Current Opinion in Cell Biology, Vol. 20, No. 1. (February 2008), pp. 41-47.
    by Jennifer L Ross, Yusuf M Ali, David M Warshaw
    posted to review molecular_motors kinesin dynein cargo_attachment by barry on 2008-07-18 19:50:57 as ** along with 1 person skv
  • Ras effectors
    Current Opinion in Cell Biology, Vol. 8, No. 2. (April 1996), pp. 197-204.
    by Christopher J Marshall
    posted to review ras by barry on 2008-07-18 19:35:50 as **
  • Farnesyltransferase inhibitors: antineoplastic mechanism and clinical prospects
    Current Opinion in Cell Biology, Vol. 12, No. 2. (1 April 2000), pp. 166-173.
    by George C Prendergast
    posted to review ras farnesyltransferase by barry on 2008-07-18 19:29:39 as read
  • The Ras branch of small Gtpases: Ras family members don't fall far from the tree
    Current Opinion in Cell Biology, Vol. 12, No. 2. (1 April 2000), pp. 157-165.
    by Gary W Reuther, Channing J Der
    posted to review ras protein_sequence by barry on 2008-07-18 19:27:39 as *
  • Protein Diffusion Across the Interface in Aqueous Two-Phase Systems
    Langmuir (17 July 2008)
    by Götz Münchow, Friedhelm Schönfeld, Steffen Hardt, Karlheinz Graf
    posted to protein interface diffusion by paulschlesinger on 2008-07-18 00:16:13 as **
  • Surfactant dependent morphology of polymeric capsules of perfluorooctyl bromide: influence of polymer adsorption at the dichloromethane-water interface
    Journal of Colloid and Interface Science, Vol. In Press, Accepted Manuscript
    by Emilia Pisani, Elias Fattal, Juliane Paris, Catherine Ringard, Véronique Rosilio, Nicolas Tsapis
    posted to solvents polymer pfob adsorption by paulschlesinger on 2008-07-18 00:04:43 as **
  • A Hydrogen Bond Surrogate Approach for Stabilization of Short Peptide Sequences in α-Helical Conformation
    Acc. Chem. Res. (17 July 2008)
    by Anupam Patgiri, Andrea L Jochim, Paramjit S Arora
    posted to stabilization helix alpha by paulschlesinger on 2008-07-17 19:31:41 as **
  • Thermodynamic Origin of Hofmeister Ion Effects
    J. Phys. Chem. B (16 July 2008)
    by Laurel M Pegram, Thomas M Record
    posted to thermodynaimcs solution ion hofmeister effects by paulschlesinger on 2008-07-16 23:52:06 as **
  • NMR-Based Molecular Ruler for Determining the Depth of Intercalants within the Lipid Bilayer. Part I: Discovering the Guidelines
    Chemistry and Physics of Lipids, Vol. In Press, Accepted Manuscript
    by Yael Cohen, Efrat Bodner, Michal Richman, Michal Afri, Aryeh A Frimer
    posted to nmr membrane intercalation bilayer by paulschlesinger on 2008-07-16 23:47:35 as **
  • HIV-1 viral genes and mitochondrial apoptosis
    Apoptosis
    by Devon Shedlock, Daniel Hwang, Andy Choo, Christopher Chung, Karuppiah Muthumani, David Weiner
    posted to mitochondria hiv apoptosis by paulschlesinger on 2008-07-16 23:35:29 as **
  • Conformational changes of melittin upon insertion into phospholipid monolayer and vesicle.
    Journal of biochemistry, Vol. 116, No. 3. (September 1994), pp. 482-487.
    by SF Sui, H Wu, Y Guo, KS Chen
    posted to two steps melittin conformation binding by paulschlesinger on 2008-07-16 22:55:26 as **
  • The importance of stupidity in scientific research
    J Cell Sci, Vol. 121, No. 11. (1 June 2008), 1771.
    by Martin A Schwartz
    posted to essay career advice by barry to the group McCammon on 2008-07-16 22:25:46 as **** along with 2 people and 1 group arindrartow dullhunk structural_bioinformatics
  • Thermal Signature of Hydrophobic Hydration Dynamics
    J. Am. Chem. Soc. (15 July 2008)
    by Johan Qvist, Bertil Halle
    posted to thermal nmr hydrophobic hydration by paulschlesinger on 2008-07-15 22:31:19 as **
  • γ-Cyclodextrin Forms a Highly Compressible Complex with 1-Adamantanecarboxylic Acid
    J. Phys. Chem. B (15 July 2008)
    by Nicolas Taulier, Tigran V Chalikian
    posted to cyclodextrin compressibility binding by paulschlesinger on 2008-07-15 22:29:22 as **
  • Ras oncogenes: split personalities
    Nat Rev Mol Cell Biol, Vol. 9, No. 7. (July 2008), pp. 517-531.
    by Antoine E Karnoub, Robert A Weinberg
    posted to review ras by barry on 2008-07-15 01:24:50 as *** along with 1 person fpattyn
  • Vacuolar and Plasma Membrane Proton Pumps Collaborate to Achieve Cytosolic pH Homeostasis in Yeast
    J. Biol. Chem., Vol. 283, No. 29. (18 July 2008), pp. 20309-20319.
    by Gloria A Martinez-Munoz, Patricia Kane
    posted to yeast regulation pump proton ph by paulschlesinger on 2008-07-15 00:19:36 as **
  • Histone Arg Modifications and p53 Regulate the Expression of OKL38, a Mediator of Apoptosis
    J. Biol. Chem., Vol. 283, No. 29. (18 July 2008), pp. 20060-20068.
    by Hongjie Yao, Pingxin Li, Bryan J Venters, Suting Zheng, Paul R Thompson, Franklin B Pugh, Yanming Wang
    posted to p53 gene apoptosis by paulschlesinger on 2008-07-15 00:15:45 as **
  • Water-membrane partition thermodynamics of an amphiphilic lipopeptide: An enthalpy driven hydrophobic effect
    Biophys. J. (11 July 2008), biophysj.108.136481.
    by Alemayehu A Gorfe, Riccardo Baron, Andrew J Mccammon
    posted to thermodynamics peptide partition lipo by paulschlesinger on 2008-07-13 00:56:55 as **
  • Interaction of Gramicidin S and its Aromatic Amino Acid Analogues with Phospholipid Membranes
    Biophys. J. (11 July 2008), biophysj.108.137471.
    by Masoud Jelokhani-Niaraki, Robert S Hodges, Joseph E Meissner, Una E Hassenstein, Laura Wheaton
    posted to peptide membrane gramicidin binding by paulschlesinger on 2008-07-13 00:46:27 as **
  • Interplay of Unsaturated Phospholipids and Cholesterol in Membranes: Effect of Double Bond Position
    Biophys. J. (11 July 2008), biophysj.108.138123.
    by Hector Martinez-Seara, Tomasz Rog, Marta Pasenkiewicz-Gierula, Ilpo Vattulainen, Mikko Karttunen, Ramon Reigada
    posted to unsaturation phospholipids cholesterol by paulschlesinger on 2008-07-13 00:45:17 as **
  • Micro-macro link in rheology of erythrocyte and vesicle suspensions
    Biophys. J. (11 July 2008), biophysj.108.138826.
    by Victoria Vitkova, Maud-Alix Mader, Benoit Polack, Chaouqi Misbah, Thomas Podgorski
    posted to vesicle rhology red cells by paulschlesinger on 2008-07-13 00:43:47 as **
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