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	Multiscale modeling of emergent materials: biological and soft matter [My Copy] Phys. Chem. Chem. Phys., Vol. 11, No. 12. (2009), pp. 1869-1892. by Teemu Murtola, Alex Bunker, Ilpo Vattulainen, Markus Deserno, Mikko Karttunen posted to hydrophobicity coarse-graining by softsimu on 2009-11-18 18:00:08 as along with 1 person flbarroso
	The inverse problem in classical statistical mechanics [My Copy] Communications in Mathematical Physics, Vol. 93, No. 1. (1 March 1984), pp. 57-121. by J. T. Chayes, L. Chayes, Elliott H. Lieb posted to coarse-graining henderson imc by softsimu on 2009-02-03 02:36:36 as
	Assessing Atomistic and Coarse-Grained Force Fields for Protein−Lipid Interactions: the Formidable Challenge of an Ionizable Side Chain in a Membrane [My Copy] J. Phys. Chem. B (18 July 2008) by Igor Vorobyov, Libo Li, Toby W. Allen posted to charmm coarse-graining by softsimu on 2008-10-12 21:38:07 as along with 3 people A_Coletta_Thesis middledomain agrossfield
	The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models [My Copy] The Journal of Chemical Physics, Vol. 128, No. 24. (2008), 244115. by W. G. Noid, Pu Liu, Yanting Wang, et al.Jhih W. Chu, Gary S. Ayton, Sergei Izvekov, Hans C. Andersen, Gregory A. Voth posted to coarse-graining by softsimu on 2008-10-12 21:32:50 as along with 4 people edws sunrise A_Coletta_Thesis agrossfield
	The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models [My Copy] The Journal of Chemical Physics, Vol. 128, No. 24. (2008), 244114. by W. G. Noid, Jhih W. Chu, Gary S. Ayton, et al.Vinod Krishna, Sergei Izvekov, Gregory A. Voth, Avisek Das, Hans C. Andersen posted to coarse-graining by softsimu on 2008-10-12 21:11:57 as along with 3 people edws sunrise A_Coletta_Thesis
	Coarse-Graining in Interaction Space: A Systematic Approach for Replacing Long-Range Electrostatics with Short-Range Potentials [My Copy] J. Phys. Chem. B (27 March 2008) by S. Izvekov, J. M. J. Swanson, G. A. Voth posted to coarse-graining by softsimu on 2008-10-12 21:08:30 as along with 2 people and 1 group sunhwan sobolevnrm baker-group
	Effective potentials for ion--DNA interactions [My Copy] The Journal of Chemical Physics, Vol. 111, No. 24. (1999), pp. 11207-11215. by A. P. Lyubartsev, A. Laaksonen posted to coarse-graining dna by softsimu on 2008-10-10 18:59:15 as along with 2 people Elena_Zubova onufriev
	Bridging Microscopic and Mesoscopic Simulations of Lipid Bilayers [My Copy] Biophys. J., Vol. 83, No. 6. (1 December 2002), pp. 3357-3370. by Gary Ayton, Gregory A. Voth posted to coarse-graining membranes by softsimu on 2008-10-10 18:57:39 as
	Interfacing continuum and molecular dynamics: An application to lipid bilayers [My Copy] The Journal of Chemical Physics, Vol. 114, No. 15. (2001), pp. 6913-6924. by Gary Ayton, Scott G. Bardenhagen, Patrick Mcmurtry, Deborah Sulsky, Gregory A. Voth posted to coarse-graining by softsimu on 2008-10-10 18:55:22 as along with 1 person simone
	Multiscale Simulation of Soft Matter: From Scale Bridging to Adaptive Resolution [My Copy] Annual Review of Physical Chemistry, Vol. 59, No. 1. (2008), pp. 545-571. by Matej Praprotnik, Luigi Delle Site, Kurt Kremer posted to coarse-graining by softsimu on 2008-10-03 10:00:06 as along with 4 people and 1 group whitead flbarroso rok RamuAnandakrishnan Jiang Research Group
	Accelerated equilibration of polymer melts by time-coarse-graining [My Copy] The Journal of Chemical Physics, Vol. 102, No. 18. (1995), pp. 7256-7266. by Bruce M. Forrest, Ulrich W. Suter posted to coarse-graining by softsimu on 2008-10-02 15:09:59 as
	Dynamics of coarse-grained fluid mixtures: how important is the static structure? [My Copy] Molecular Physics, Vol. 105, No. 8. (2007), pp. 1039-1052. by Sabine H. Klapp, Jörg R. Silbermann, Martin Schoen posted to coarse-graining by softsimu on 2008-10-02 15:09:06 as
	A novel method for measuring the bending rigidity of model lipid membranes by simulating tethers [My Copy] The Journal of Chemical Physics, Vol. 125, No. 20. (2006) by Vagelis A. Harmandaris, Markus Deserno posted to coarse-graining by softsimu on 2008-10-02 14:57:21 as
	Computational Modeling of Membrane Bilayers [My Copy] Vol. 60 (2008) edited by Scott K. Feller posted to coarse-graining file-import-08-10-02 membranes by softsimu on 2008-10-02 09:50:01 as
	Mesoscopic models of biological membranes [My Copy] Physics Reports, Vol. 437 (2006), pp. 1-54. by Maddalena Venturoli, Maria M. Sperotto, Marieke Kranenburg, Berend Smit posted to coarse-graining file-import-08-10-02 by softsimu on 2008-10-02 09:42:40 as
	Biological and synthetic membranes: What can be learned from a coarse-grained description? [My Copy] Physics Reports, Vol. 434 (2006), pp. 113-176. by Marcus Müller, Kirill Katsov, Michael Schick posted to coarse-graining file-import-08-10-02 by softsimu on 2008-10-02 09:37:37 as
	Test of the Gouy-Chapman Theory for a Charged Lipid Membrane against Explicit-Solvent Molecular Dynamics Simulations [My Copy] Physical Review Letters, Vol. 101, No. 3. (2008) by Myunggi Yi, Hugh Nymeyer, Huan X. Zhou posted to coarse-graining diffusion-ions electrostatics gouy-chapman by softsimu on 2008-09-27 14:36:52 as along with 3 people and 1 group j_vinals sobolevnrm agrossfield baker-group
	Thermodynamically Admissible Form for Discrete Hydrodynamics [My Copy] Physical Review Letters, Vol. 83, No. 22. (29 November 1999), 4542. by Pep Español, Mar Serrano, Hans C. Öttinger posted to coarse-graining generic by softsimu on 2008-06-27 21:44:04 as
	A Quantitative Coarse-Grain Model for Lipid Bilayers [My Copy] J. Phys. Chem. B, Vol. 112, No. 3. (24 January 2008), pp. 802-815. by M. Orsi, D. Y. Haubertin, W. E. Sanderson, J. W. Essex posted to coarse-graining by softsimu on 2008-06-27 19:34:14 as along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
	The MARTINI Coarse-Grained Force Field: Extension to Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 5. (1 May 2008), pp. 819-834. by Luca Monticelli, Senthil K. Kandasamy, Xavier Periole, Ronald G. Larson, D. Peter Tieleman, Siewert-Jan Marrink posted to coarse-graining martini by softsimu on 2008-06-27 19:29:01 as along with 13 people and 3 groups arnaucordomi dimka oteri sunrise flbarroso A_Coletta_Thesis krapnik Marine middledomain sobolevnrm Ema aqeel DanielParton Structural Biology Group TorVergata Molecular dynamics in MSU baker-group
	Simulations of biomembranes and water: Important technical aspects [My Copy] Fluid Phase Equilib., Vol. 261, No. 1-2. (2007), pp. 18-25. by S. V. Bennun, A. N. Dickey, C. Xing, R. Faller posted to coarse-graining by softsimu on 2008-04-11 19:21:52 as along with 2 people sunrise jingrebeccali
	A strategy for analysis of (molecular) equilibrium simulations: Configuration space density estimation, clustering, and visualization [My Copy] The Journal of Chemical Physics, Vol. 114, No. 5. (2001), pp. 2079-2089. by Fred A. Hamprecht, Christine Peter, Xavier Daura, Walter Thiel, Wilfred F. van Gunsteren posted to coarse-graining by softsimu on 2008-03-18 19:02:32 as
	A systematic method to derive force fields for coarse-grained simulations of phospholipids [My Copy] Computer Physics Communications, Vol. 175, No. 4. (15 August 2006), pp. 264-268. by J. Elezgaray, M. Laguerre posted to coarse-graining by softsimu on 2008-03-18 18:59:12 as
	Transmembrane Peptide-Induced Lipid Sorting and Mechanism of Lalpha-to-Inverted Phase Transition Using Coarse-Grain Molecular Dynamics [My Copy] Biophys. J., Vol. 87, No. 4. (1 October 2004), pp. 2107-2115. by Steve O. Nielsen, Carlos F. Lopez, Ivaylo Ivanov, Preston B. Moore, John C. Shelley, Michael L. Klein posted to coarse-graining peptides by softsimu on 2008-03-18 18:53:51 as
	Tunable generic model for fluid bilayer membranes [My Copy] Physical Review E, Vol. 72, No. 1. (Jul 2005), 011506. by Ira R. Cooke, Kurt Kremer, Markus Deserno posted to coarse-graining by softsimu on 2008-03-18 17:53:44 as along with 3 people cjryan mc1975 janwedekind
	Aggregation and vesiculation of membrane proteins by curvature-mediated interactions [My Copy] Nature, Vol. 447, No. 7143., pp. 461-464. by Benedict J. Reynwar, Gregoria Illya, Vagelis A. Harmandaris, Martin M. Müller, Kurt Kremer, Markus Deserno posted to coarse-graining vesicles by softsimu on 2008-03-18 17:51:29 as along with 1 person choonpeng
	Implicit solvent simulation models for biomembranes [My Copy] European Biophysics Journal, Vol. 35, No. 2. (11 January 2006), pp. 104-124. by Grace Brannigan, Lawrence Lin, Frank Brown posted to coarse-graining implicit-solvent by softsimu on 2008-03-18 17:50:16 as
	Stability and Dynamics of Virus Capsids Described by Coarse-Grained Modeling [My Copy] Structure, Vol. 14 (2006), pp. 1767-1777. by A. Arkhipov, P. L. Freddolino, K. Schulten posted to coarse-graining by softsimu on 2008-03-18 17:40:28 as
	Coarse-Grained Molecular Dynamics Simulations of a Rotating Bacterial Flagellum. [My Copy] Biophys J (22 September 2006) by Anton Arkhipov, Peter L L. Freddolino, Katsumi Imada, Keiichi Namba, Klaus Schulten posted to coarse-graining by softsimu on 2008-03-18 17:37:44 as along with 2 people mbeeby choonpeng
	Multiscale coarse graining of liquid-state systems [My Copy] The Journal of Chemical Physics, Vol. 123, No. 13. (2005) by Sergei Izvekov, Gregory A. Voth posted to coarse-graining by softsimu on 2008-03-18 17:34:41 as along with 1 person Lombardo_7
	Automatic coarse graining of polymers [My Copy] Polymer, Vol. 45, No. 11. (May 2004), pp. 3869-3876. by Roland Faller posted to coarse-graining by softsimu on 2008-03-18 17:23:53 as
	Conformational analysis of lipid molecules by self-organizing maps [My Copy] The Journal of Chemical Physics, Vol. 126, No. 5. (2007) by Teemu Murtola, Mikko Kupiainen, Emma Falck, Ilpo Vattulainen posted to coarse-graining by softsimu on 2008-03-08 20:22:22 as
	Structure of Spheroidal HDL Particles Revealed by Combined Atomistic and Coarse-Grained Simulations [My Copy] Biophys. J., Vol. 94, No. 6. (15 March 2008), pp. 2306-2319. by Andrea Catte, James C. Patterson, Denys Bashtovyy, et al.Martin K. Jones, Feifei Gu, Ling Li, Aldo Rampioni, Durba Sengupta, Timo Vuorela, Perttu Niemela, Mikko Karttunen, Siewert J. Marrink, Ilpo Vattulainen, Jere P. Segrest posted to coarse-graining hdl by softsimu on 2008-03-05 20:55:23 as along with 1 person sunnytov
	Phase behavior of monomeric mixtures and polymer solutions with soft interaction potentials [My Copy] The Journal of Chemical Physics, Vol. 114, No. 17. (2001), pp. 7644-7654. by C. M. Wijmans, B. Smit, R. D. Groot posted to coarse-graining dpd polymers by softsimu on 2008-02-22 19:35:34 as
	Configurational Entropies of Lipids in Pure and Mixed Bilayers from Atomic-Level and Coarse-Grained Molecular Dynamics Simulations [My Copy] J. Phys. Chem. B, Vol. 110, No. 31. (10 August 2006), pp. 15602-15614. by R. Baron, A. H. Devries, P. H. Hunenberger, W. F. Vangunsteren posted to coarse-graining by softsimu on 2008-02-18 00:16:58 as
	Coarse Grained Model for Semiquantitative Lipid Simulations [My Copy] The Journal of Physical Chemistry B, Vol. 108, No. 2. (1 January 2004), pp. 750-760. by Siewert J. Marrink, Alex H. de Vries, Alan E. Mark posted to coarse-graining by softsimu on 2008-02-18 00:16:34 as along with 5 people and 1 group dsmueller Elena_Zubova Marine choonpeng sunnytov Molecular dynamics in MSU
	Coarse grain models and the computer simulation of soft materials [My Copy] Journal of Physics: Condensed Matter, Vol. 16, No. 15. (2004), pp. R481-R512. by Steve O. Nielsen, Carlos F. Lopez, Goundla Srinivas, Michael L. Klein posted to coarse-graining by softsimu on 2008-02-08 17:44:08 as along with 3 people edws kaz229 RamuAnandakrishnan
	Multiscale modeling of lipids and lipid bilayers [My Copy] European Biophysics Journal, Vol. 35, No. 1. (19 December 2005), pp. 53-61. by Alexander Lyubartsev posted to coarse-graining by softsimu on 2008-01-29 01:06:44 as along with 1 person onufriev
	Calculation of effective interaction potentials from radial distribution functions: A reverse Monte Carlo approach [My Copy] Physical Review E, Vol. 52, No. 4. (October 1995), 3730. by Alexander P. Lyubartsev, Aatto Laaksonen posted to coarse-graining imc by softsimu on 2008-01-29 01:06:13 as
	Polymorphic Phase Behavior of Cardiolipin Derivatives Studied by Coarse-Grained Molecular Dynamics [My Copy] J. Phys. Chem. B, Vol. 111, No. 25. (28 June 2007), pp. 7194-7200. by M. Dahlberg posted to cardiolipin coarse-graining by softsimu on 2008-01-28 15:00:14 as
	Coarse-grained transmembrane proteins: hydrophobic matching, aggregation, and their effect on fusion. [My Copy] J Phys Chem B, Vol. 110, No. 27. (13 July 2006), pp. 13614-13623. by A. F. Smeijers, K. Pieterse, A. J. Markvoort, P. A. Hilbers posted to coarse-graining proteins by softsimu on 2008-01-24 00:55:25 as
	Pores in bilayer membranes of amphiphilic molecules: Coarse-grained molecular dynamics simulations compared with simple mesoscopic models [My Copy] The Journal of Chemical Physics, Vol. 121, No. 4. (2004), pp. 1890-1900. by C. Loison, M. Mareschal, F. Schmid posted to pores coarse-graining membranes by softsimu on 2008-01-23 06:35:02 as
	Multiscale Monte Carlo Algorithm for Simple Fluids [My Copy] Physical Review Letters, Vol. 97, No. 19. (2006) by A. C. Maggs posted to coarse-graining electrostatics by softsimu on 2008-01-21 22:18:37 as
	Coarse-grained model for phospholipid/cholesterol bilayer [My Copy] The Journal of Chemical Physics, Vol. 121, No. 18. (2004), pp. 9156-9165. by Teemu Murtola, Emma Falck, Michael Patra, Mikko Karttunen, Ilpo Vattulainen posted to cholesterol coarse-graining phospholipid by softsimu on 2008-01-21 18:05:17 as
	Coarse-grained computations for a micellar system. [My Copy] J Chem Phys, Vol. 122, No. 4. (22 January 2005) by D. I. Kopelevich, A. Z. Panagiotopoulos, I. G. Kevrekidis posted to coarse-graining micelles by softsimu on 2008-01-19 16:06:47 as along with 1 person baaden
	The MARTINI Force Field: Coarse Grained Model for Biomolecular Simulations. [My Copy] Journal of Physical Chemistry B, Vol. 111, No. 27. (1 July 2007), pp. 7812-7824. by Siewert J. Marrink, H. J. Risselada, Serge Yefimov, D. P. Tieleman, Alex H. Vries posted to coarse-graining force force-field martini by softsimu on 2008-01-10 14:23:39 as along with 7 people and 2 groups anuragsethi sunrise A_Coletta_Thesis Marine choonpeng dimka sunnytov Structural Biology Group TorVergata Molecular dynamics in MSU
	Coarse-grained model for phospholipid/cholesterol bilayer employing inverse Monte Carlo with thermodynamic constraints [My Copy] J Chem Phys, Vol. 126, No. 7. (2007), 075101. by T. Murtola, E. Falck, M. Karttunen, I. Vattulainen posted to cholesterol coarse-graining imc membranes monte-carlo by softsimu on 2007-12-12 14:20:41 as
	Coarse Graining of Nonbonded Degrees of Freedom [My Copy] Physical Review Letters, Vol. 98, No. 26. (2007), 267801. by H. Bock, K. E. Gubbins, S. H. L. Klapp posted to coarse-graining by softsimu on 2007-12-12 03:50:41 as
	Classification of protein families and detection of the determinant residues with an improved self-organizing map [My Copy] Biochemistry, Vol. 76 (1997), pp. 441-450. by M. A. Andrade, G. Casari, C. Sander, A. Valencia posted to coarse-graining som by softsimu on 2007-12-12 01:33:24 as
	Simulation of polymer melts. II. From coarse-grained models back to atomistic description [My Copy] Acta Polymer., Vol. 49 (1998), pp. 75-79. by W. Tschöp, K. Kremer, O. Hahn, J. Batoulis, T. Bürger posted to polymers bibtex-import coarse-graining melts by softsimu on 2007-12-11 21:32:08 as

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bibtex-import	3999
micelles	243
membranes	147
sds	134
dpd	114
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ctacl	1
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delta-function	1
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file-import-08-09-16	1
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melting	1
membrane-proteins	1
mercedes_benz	1
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mixed	1
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molecular-medicine	1
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mrk-diff	1
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namd2	1
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odlro	1
of	1
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paper	1
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shake	1
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swift-hohenberg	1
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twin-range-cutoff	1
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