sriesenfeld's phylogeny [13 articles] Export

Recent papers added to sriesenfeld's library classified by the tag phylogeny. You can also see everyone's phylogeny.

	Analysis of Rare Genomic Changes Does Not Support the Unikont-Bikont Phylogeny and Suggests Cyanobacterial Symbiosis as the Point of Primary Radiation of Eukaryotes [My Copy] Genome Biol Evol, Vol. 2009, No. 0. (22 June 2009), pp. 99-113. by Igor B. Rogozin, Malay K. Basu, Miklos Csuros, Eugene V. Koonin posted to deep divergence eukaryote phylogeny by sriesenfeld on 2009-07-16 20:00:36 as
	The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses. [My Copy] Pac Symp Biocomput (2008), pp. 25-36. by S. Nelesen, K. Liu, D. Zhao, C. R. Linder, T. Warnow posted to alignment guide phylogeny tree by sriesenfeld on 2009-04-06 20:55:33 as along with 2 people and 1 group treangen dpollard EisenLab
	Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment? [My Copy] BMC Evolutionary Biology, Vol. 8 (26 March 2008), 95. by Stefanie Hartmann, Todd J. Vision posted to ests phylogenomics phylogeny by sriesenfeld on 2009-02-17 20:01:42 as along with 7 people and 2 groups skembel treangen natstreet druvus stajich Patola aprasad iSEEM Mycology
	RAMI, a tool for identification and characterization of phylogenetic clusters in microbial communities [My Copy] Bioinformatics (17 February 2009), btp051. by Thomas Pommier, Bjorn Canback, Per Lundberg, Ake Hagstrom, Anders Tunlid posted to cluster communities metagenomics phylogeny software by sriesenfeld on 2009-02-17 18:45:51 as along with 4 people and 2 groups elbrodie hpaces skembel djkt phylocom iSEEM
	A structural EM algorithm for phylogenetic inference. [My Copy] J Comput Biol, Vol. 9, No. 2. (2002), pp. 331-353. by N. Friedman, M. Ninio, I. Pe'er, T. Pupko posted to algorithm em phylogeny by sriesenfeld on 2009-02-09 20:26:39 as along with 3 people Garamonfok tale wenhan
	A hierarchical model for incomplete alignments in phylogenetic inference [My Copy] Bioinformatics, Vol. 25, No. 5. (1 March 2009), pp. 592-598. by Fuxia Cheng, Stefanie Hartmann, Mayetri Gupta, Joseph G. Ibrahim, Todd J. Vision posted to alignment est incomplete phylogeny by sriesenfeld on 2009-01-16 20:09:03 as along with 7 people and 1 group nuin druvus skembel djkt mhamada jmeppley jameswasmuth iSEEM
	Taxonomic distribution of large DNA viruses in the sea [My Copy] Genome Biology, Vol. 9, No. 7. (2008) by Adam Monier, Jean M. Claverie, Hiroyuki Ogata posted to metagenomics phylogeny taxonomy virus by sriesenfeld on 2009-01-15 01:19:16 as along with 4 people and 1 group idoerg skembel neils djkt iSEEM
	Phylogenetic classification of short environmental DNA fragments [My Copy] Nucl. Acids Res., Vol. 36, No. 7. (19 February 2008), pp. gkn038-2239. by Lutz Krause, Naryttza N. Diaz, Alexander Goesmann, et al.Scott Kelley, Tim W. Nattkemper, Forest Rohwer, Robert A. Edwards, Jens Stoye posted to metagenomics phylogeny taxonomy by sriesenfeld on 2009-01-15 01:18:15 as along with 7 people esyoun ematsen dakelley idoerg skembel hpaces vrich
	An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP) [My Copy] PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2566. by Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen posted to alignment phylogeny rrna software taxonomy by sriesenfeld on 2008-12-13 01:23:00 as along with 7 people and 4 groups Katje AaronDarling skembel druvus vaulot skato_toyaku djkt microbiology_nijmegen Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
	Quantitative phylogenetic assessment of microbial communities in diverse environments. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130. by C. von Mering, P. Hugenholtz, J. Raes, et al.S. G. Tringe, T. Doerks, L. J. Jensen, N. Ward, P. Bork posted to evolution metagenomics microbial phylogeny by sriesenfeld on 2008-12-03 17:53:05 as along with 19 people and 7 groups hwright pkm michaelbarton idoerg skembel kozo-ni ana nickluscombe michC bluto agg19954 TaqSys azazello Thaverkamp larsjuhljensen rvgomes mjetten jlgreen djkt structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology microbiology_nijmegen Green Lab iSEEM
	An exact algorithm for the geodesic distance between phylogenetic trees. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 6. (g 2008), pp. 577-591. by A. Kupczok, A. V. Haeseler, S. Klaere posted to algorithm metric phylogeny by sriesenfeld on 2008-11-19 03:53:39 as along with 1 person nuin
	Variational Upper and Lower Bounds for Probabilistic Graphical Models [My Copy] Journal of Computational Biology, Vol. 15, No. 7. (2008), pp. 721-735. by Ydo Wexler, Dan Geiger posted to dna evolution phylogeny by sriesenfeld on 2008-11-19 03:45:48 as
	Gene Family Evolution by Duplication, Speciation, and Loss [My Copy] Journal of Computational Biology, Vol. 15, No. 8. (October 2008), pp. 1043-1062. by Cedric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk posted to duplication evolution family gene phylogeny by sriesenfeld on 2008-11-19 03:42:32 as along with 3 people gdv druvus nuin

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phylogeny	13
evolution	12
metagenomics	12
algorithm	6
microbial	5
phylogenomics	5
software	5
variation	5
alignment	4
communities	4
human	4
taxonomy	4
gene	3
rate	3
statistical	3
association	2
binning	2
family	2
genome	2
hmm	2
method	2
misc	2
noncoding	2
popgen	2
simulations	2
adaptation	1
blast	1
change	1
cluster	1
clustering	1
community	1
conserved	1
data	1
deep	1
divergence	1
diversity	1
dna	1
duplication	1
ecology	1
em	1
environmental	1
est	1
ests	1
eukaryote	1
experimental	1
function	1
genetics	1
genomics	1
genotype	1
guide	1
hgt	1
incomplete	1
likelihood	1
linkage	1
maximum	1
metric	1
multiple	1
nearest	1
neighbor	1
open-source	1
phenotype	1
population	1
prediction	1
profile	1
promoter	1
rates	1
research	1
review	1
rrna	1
search	1
selection	1
selective	1
sequence	1
substitution	1
sweeps	1
tree	1
virus	1
visual	1

sriesenfeld's phylogeny [13 articles] Export

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