ssgong's library 40 articles Export

	R: A Language for Data Analysis and Graphics [My Copy] Journal of Computational and Graphical Statistics, Vol. 5, No. 3. (1996), pp. 299-314. by Ross Ihaka, Robert Gentleman posted to statistic software r by ssgong on 2009-09-02 19:15:57 as along with 6 people Inigoleiz eisdur dgruiz olympos incovoma xingxu
	Fast predictions of thermodynamics and kinetics of protein-protein recognition from structures: from molecular design to systems biology [My Copy] Mol. BioSyst., Vol. 5, No. 4. (2009), pp. 323-334. by Daniele Dell'orco posted to snp snpeffect by ssgong on 2009-05-28 10:10:10 as along with 2 people higueruelo flbarroso
	Towards a structural basis of human non-synonymous single nucleotide polymorphisms [My Copy] Trends in Genetics, Vol. 16, No. 5. (1 May 2000), pp. 198-200. by S. Sunyaev posted to snp by ssgong on 2009-05-26 11:29:34 as
	Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. [My Copy] Nucleic Acids Res (17 December 2007) by Joke Reumers, Lucia Conde, Ignacio Medina, et al.Sebastian Maurer-Stroh, Joost Van V. Durme, Joaquin Dopazo, Frederic Rousseau, Joost Schymkowitz posted to disease pupasuite snpeffect variation by ssgong on 2009-03-27 16:45:40 as along with 3 people and 1 group daforerog guhjy skoddet Nielsen group
	SPROUTS: a database for the evaluation of protein stability upon point mutation [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D374-379. by Mathieu Lonquety, Zoe Lacroix, Nikolaos Papandreou, Jacques Chomilier posted to mutation stability website by ssgong on 2009-03-27 14:58:37 as
	Human Gene Mutation Database (HGMD): 2003 update. [My Copy] Hum Mutat, Vol. 21, No. 6. (June 2003), pp. 577-581. by P. D. Stenson, E. V. Ball, M. Mort, et al.A. D. Phillips, J. A. Shiel, N. S. Thomas, S. Abeysinghe, M. Krawczak, D. N. Cooper posted to database disease hgmd by ssgong on 2009-03-27 14:29:35 as along with 2 people and 1 group chad_davis cat_worth structural_bioinformatics
	Patterns of somatic mutation in human cancer genomes [My Copy] Nature, Vol. 446, No. 7132. (08 March 2007), pp. 153-158. by Christopher Greenman, Philip Stephens, Raffaella Smith, et al.Gillian L. Dalgliesh, Christopher Hunter, Graham Bignell, Helen Davies, Jon Teague, Adam Butler, Claire Stevens, Sarah Edkins, Sarah O/'Meara, Imre Vastrik, Esther E. Schmidt, Tim Avis, Syd Barthorpe, Gurpreet Bhamra, Gemma Buck, Bhudipa Choudhury, Jody Clements, Jennifer Cole, Ed Dicks, Simon Forbes, Kris Gray, Kelly Halliday, Rachel Harrison, Katy Hills, Jon Hinton, Andy Jenkinson, David Jones, Andy Menzies, Tatiana Mironenko, Janet Perry, Keiran Raine, Dave Richardson, Rebecca Shepherd, Alexandra Small, Calli Tofts, Jennifer Varian, Tony Webb, Sofie West, Sara Widaa, Andy Yates, Daniel P. Cahill, David N. Louis, Peter Goldstraw, Andrew G. Nicholson, Francis Brasseur, Leendert Looijenga, Barbara L. Weber, Yoke-Eng Chiew, Anna deFazio, Mel F. Greaves, Anthony R. Green, Peter Campbell, Ewan Birney, Douglas F. Easton, Georgia Chenevix-Trench, Min-Han Tan, Sok K. Khoo, Bin T. Teh, Siu T. Yuen, Suet Y. Leung, Richard Wooster, P. Andrew Futreal, Michael R. Stratton posted to cancer disease mutation somtic by ssgong on 2009-03-27 13:36:31 as along with 15 people Neeperando xingxu dbensasson koller kentsis jfr massivemayhem efge Garamonfok daed Petersarkies ramensky frohike cerami srp33
	The Genomic Landscapes of Human Breast and Colorectal Cancers. [My Copy] Science (11 October 2007) by Laura D D. Wood, D Williams W. Parsons, Siân Jones, et al.Jimmy Lin, Tobias Sjöblom, Rebecca J J. Leary, Dong Shen, Simina M M. Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A. Wilson, Joshua S S. Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K. Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H. Park, Charit L L. Pethiyagoda, P V Krishna V. Pant, Dennis G G. Ballinger, Andrew B B. Sparks, James Hartigan, Douglas R R. Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D. Markowitz, Giovanni Parmigiani, Kenneth W W. Kinzler, Victor E E. Velculescu, Bert Vogelstein posted to cancer disease mutation by ssgong on 2009-03-27 13:24:38 as along with 17 people and 1 group zufar daed guhjy tmmurali jfr rdiaz eisei ramensky massivemayhem bioyang cabbagezs xingxu shikin renatomilani gwenknight cerami srp33 VUMCGenomics
	Regulatory network motifs and hotspots of cancer genes in a mammalian cellular signalling network [My Copy] Systems Biology, IET In Systems Biology, IET, Vol. 1, No. 5. (2007), pp. 292-297. by A. Awan, H. Bari, F. Yan, et al.S. Moksong, S. Yang, S. Chowdhury, Q. Cui, Z. Yu, E. O. Purisima, E. Wang posted to cancer disease mutation signalling by ssgong on 2009-03-27 13:13:52 as
	Somatic mutations of the protein kinase gene family in human lung cancer. [My Copy] Cancer research, Vol. 65, No. 17. (1 September 2005), pp. 7591-7595. by H. Davies, C. Hunter, R. Smith, et al.P. Stephens, C. Greenman, G. Bignell, J. Teague, A. Butler, S. Edkins, C. Stevens, A. Parker, S. O'Meara, T. Avis, S. Barthorpe, L. Brackenbury, G. Buck, J. Clements, J. Cole, E. Dicks, K. Edwards, S. Forbes, M. Gorton, K. Gray, K. Halliday, R. Harrison, K. Hills, J. Hinton, D. Jones, V. Kosmidou, R. Laman, R. Lugg, A. Menzies, J. Perry, R. Petty, K. Raine, R. Shepherd, A. Small, H. Solomon, Y. Stephens, C. Tofts, J. Varian, A. Webb, S. West, S. Widaa, A. Yates, F. Brasseur, C. S. Cooper, A. M. Flanagan, A. Green, M. Knowles, S. Y. Leung, L. H. Looijenga, B. Malkowicz, M. A. Pierotti, B. T. Teh, S. T. Yuen, S. R. Lakhani, D. F. Easton, B. L. Weber, P. Goldstraw, A. G. Nicholson, R. Wooster, M. R. Stratton, P. A. Futreal posted to cancer disease mutation somatic by ssgong on 2009-03-27 13:09:01 as along with 2 people ramensky frohike
	Mutational analysis of the tyrosine kinome in colorectal cancers. [My Copy] Science (New York, N.Y.), Vol. 300, No. 5621. (9 May 2003) by A. Bardelli, D. W. Parsons, N. Silliman, et al.J. Ptak, S. Szabo, S. Saha, S. Markowitz, J. K. Willson, G. Parmigiani, K. W. Kinzler, B. Vogelstein, V. E. Velculescu posted to cancer disease kinase mutation by ssgong on 2009-03-27 13:08:09 as
	Lung cancer: intragenic ERBB2 kinase mutations in tumours. [My Copy] Nature, Vol. 431, No. 7008. (30 September 2004), pp. 525-526. by P. Stephens, C. Hunter, G. Bignell, et al.S. Edkins, H. Davies, J. Teague, C. Stevens, S. O'Meara, R. Smith, A. Parker, A. Barthorpe, M. Blow, L. Brackenbury, A. Butler, O. Clarke, J. Cole, E. Dicks, A. Dike, A. Drozd, K. Edwards, S. Forbes, R. Foster, K. Gray, C. Greenman, K. Halliday, K. Hills, V. Kosmidou, R. Lugg, A. Menzies, J. Perry, R. Petty, K. Raine, L. Ratford, R. Shepherd, A. Small, Y. Stephens, C. Tofts, J. Varian, S. West, S. Widaa, A. Yates, F. Brasseur, C. S. Cooper, A. M. Flanagan, M. Knowles, S. Y. Leung, D. N. Louis, L. H. Looijenga, B. Malkowicz, M. A. Pierotti, B. Teh, G. Chenevix-Trench, B. L. Weber, S. T. Yuen, G. Harris, P. Goldstraw, A. G. Nicholson, P. A. Futreal, R. Wooster, M. R. Stratton posted to cancer disease erbb lung mutation by ssgong on 2009-03-27 12:46:36 as
	Mutations of the BRAF gene in human cancer [My Copy] Nature, Vol. 417, No. 6892. (27 June 2002), pp. 949-954. by Helen Davies, Graham R. Bignell, Charles Cox, et al.Philip Stephens, Sarah Edkins, Sheila Clegg, Jon Teague, Hayley Woffendin, Mathew J. Garnett, William Bottomley, Neil Davis, Ed Dicks, Rebecca Ewing, Yvonne Floyd, Kristian Gray, Sarah Hall, Rachel Hawes, Jaime Hughes, Vivian Kosmidou, Andrew Menzies, Catherine Mould, Adrian Parker, Claire Stevens, Stephen Watt, Steven Hooper, Rebecca Wilson, Hiran Jayatilake, Barry A. Gusterson, Colin Cooper, Janet Shipley, Darren Hargrave, Katherine Pritchard-Jones, Norman Maitland, Georgia Chenevix-Trench, Gregory J. Riggins, Darell D. Bigner, Giuseppe Palmieri, Antonio Cossu, Adrienne Flanagan, Andrew Nicholson, Judy W. Ho, Suet Y. Leung, Siu T. Yuen, Barbara L. Weber, Hilliard F. Seigler, Timothy L. Darrow, Hugh Paterson, Richard Marais, Christopher J. Marshall, Richard Wooster, Michael R. Stratton, Andrew P. Futreal posted to braf cancer disease mutation by ssgong on 2009-03-27 12:45:20 as along with 2 people cpnP srp33
	Inactivation of the DNA Repair Gene O6-Methylguanine-DNA Methyltransferase by Promoter Hypermethylation Is Associated with G to A Mutations in K-ras in Colorectal Tumorigenesis [My Copy] Cancer Res, Vol. 60, No. 9. (1 May 2000), pp. 2368-2371. by Manel Esteller, Minoru Toyota, Montserrat Sanchez-Cespedes, et al.Gabriel Capella, Miguel A. Peinado, Neil D. Watkins, Jean-Pierre J. Issa, David Sidransky, Stephen B. Baylin, James G. Herman posted to cancer disease k-ras mutation by ssgong on 2009-03-27 12:43:51 as
	The UMD-p53 database: New mutations and analysis tools [My Copy] Human Mutation, Vol. 21, No. 3. (2003), pp. 176-181. by Christophe Béroud, Thierry Soussi posted to cancer disease mutation p53 by ssgong on 2009-03-27 11:56:04 as
	The IARC TP53 database: New online mutation analysis and recommendations to users [My Copy] Human Mutation, Vol. 19, No. 6. (2002), pp. 607-614. by Magali Olivier, Ros Eeles, Monica Hollstein, Mohammed A. Khan, Curtis C. Harris, Pierre Hainaut posted to cancer mutation p53 by ssgong on 2009-03-27 11:54:44 as
	From the Cover: Structural basis for understanding oncogenic p53 mutations and designing rescue drugs [My Copy] PNAS, Vol. 103, No. 41. (10 October 2006), pp. 15056-15061. by Andreas C. Joerger, Hwee C. Ang, Alan R. Fersht posted to fersht p53 by ssgong on 2009-03-27 11:32:17 as along with 2 people aswin chgjb
	Loss of protein structure stability as a major causative factor in monogenic disease [My Copy] J. Mol. Biol., Vol. 353, No. 2. (2005), 459-73. by P. Yue, Z. Li, J. Moult posted to disease moult snp by ssgong on 2009-03-27 11:14:18 as along with 1 person bicko
	SNPs, protein structure, and disease. [My Copy] Hum Mutat, Vol. 17, No. 4. (April 2001), pp. 263-270. by Z. Wang, J. Moult posted to disease moult snp by ssgong on 2009-03-10 12:14:58 as along with 4 people and 2 groups bicko Einat massivemayhem cat_worth References for 3DSim paper structural_bioinformatics
	Human disease: Joining the dots from SNPs to proteins [My Copy] Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 496-496. by Louisa Flintoft posted to disease snp by ssgong on 2009-03-10 12:12:07 as along with 3 people ilyashl cabbagesofdoom marck
	Origins of the genetic code: the escaped triplet theory. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 179-198. by M. Yarus, J. G. Caporaso, R. Knight posted to code genetic origin by ssgong on 2009-03-06 15:04:47 as
	The natural history of protein domains. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 31 (2002), pp. 45-71. by C. P. Ponting, R. R. Russell posted to domain history protein by ssgong on 2009-03-06 14:55:23 as along with 3 people BioNica nickolay IrinaMoreira
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted to domain evolution family protein by ssgong on 2009-03-06 14:35:26 as along with 19 people and 6 groups dfdong ucbcjbm flbarroso kumar_physics yuslinaz ana barry tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 nigham sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants [My Copy] Hum. Mutat., Vol. 23, No. 5., 464-70. by Y. L. Yip, H. Scheib, A. V. Diemand, et al.A. Gattiker, L. M. Famiglietti, E. Gasteiger, A. Bairoch posted to no-tag by ssgong on 2009-03-05 23:31:00 as
	MMDB: annotating protein sequences with Entrez's 3D-structure database [My Copy] Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D298-D300. by Wang, Yanli, Addess, et al.J. Kenneth, Chen, Jie, Geer, Y. Lewis, He, Jane, He, Siqian, Lu, Shennan, Madej, Thomas, Marchler-Bauer, Aron, Thiessen, A. Paul, Zhang, Naigong, Bryant, H. Stephen posted to mapping mmdb pdb sequence structure uniprot by ssgong on 2009-03-05 22:48:42 as along with 1 person dsmueller
	The IMB Jena Image Library of Biological Macromolecules: 2002 update [My Copy] Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 253-254. by Jan Reichert, Jurgen Suhnel posted to jenalib mapping pdb sequence structure uniprot by ssgong on 2009-03-05 22:36:36 as along with 1 person reyez
	PDBsum new things. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D355-359. by R. A. Laskowski posted to mapping pdb pdbsum sequence structure uniprot by ssgong on 2009-03-05 22:20:35 as along with 3 people grottenolm bicko lptolik
	E-MSD: an integrated data resource for bioinformatics [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue., D262-5. by S. Velankar, P. Mcneil, V. Mittard-Runte, et al.A. Suarez, D. Barrell, R. Apweiler, K. Henrick posted to mapping pdb sequence structure uniprot by ssgong on 2009-03-05 22:18:08 as
	SSMap: a new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase [My Copy] BMC Bioinformatics, Vol. 9 (23 September 2008), 391. by Fabrice P. A. David, Yum L. Yip posted to mapping pdb sequence structure uniprot by ssgong on 2009-03-05 21:57:03 as along with 1 person niallhaslam
	Seq2Struct: a resource for establishing sequence-structure links [My Copy] Bioinformatics, Vol. 21, No. 4. (15 February 2005), pp. 551-553. by Allegra Via, Andreas Zanzoni, Manuela Helmer-Citterich posted to mapping pdb sequence structure to uniprot by ssgong on 2009-03-05 21:56:18 as
	Mapping PDB chains to UniProtKB entries [My Copy] Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4297-4301. by Andrew C. Martin posted to mapping pdb sequence structure to uniprot by ssgong on 2009-03-05 21:46:41 as
	Discarding Functional Residues from the Substitution Table Improves Predictions of Active Sites within Three-Dimensional Structures [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (3 October 2008), e1000179. by Sungsam Gong, Tom L. Blundell posted to crescendo doublemap esst substitution table by ssgong on 2009-03-01 16:48:39 as along with 7 people sebk gjuggler joseph_x_zhou zwang bicko massivemayhem reyez
	Loss of protein structure stability as a major causative factor in monogenic disease. [My Copy] J Mol Biol, Vol. 353, No. 2. (21 October 2005), pp. 459-473. by P. Yue, Z. Li, J. Moult posted to mutation sap snp by ssgong on 2009-02-11 11:04:15 as along with 1 person chrn
	Sequences, Sequences, and Sequences [My Copy] Annual Review of Biochemistry, Vol. 57, No. 1. (1988), pp. 1-29. by Frederick Sanger posted to insulin by ssgong on 2009-02-07 14:13:44 as along with 1 person katholt
	What is principal component analysis? [My Copy] Nature Biotechnology, Vol. 26, No. 3. (01 March 2008), pp. 303-304. by Markus Ringner posted to pca by ssgong on 2009-02-05 12:52:07 as along with 69 people and 3 groups singhsh Jporci tnhh ruvido ucbcjbm daforerog Diego_Prada abellogin nguizard thegoose2 arsyed Zephyrus flips svozil VGreiff kaniko Yanno guhjy operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu rsantana sobolevnrm fryanpan kengg rvosa dekay23 adacier hpaces waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici baker-group FAB-lab Bioinformatics
	GENOME TREES AND THE NATURE OF GENOME EVOLUTION [My Copy] Annual Review of Microbiology, Vol. 59, No. 1. (2005), pp. 191-209. by Berend Snel, Martijn A. Huynen, Bas E. Dutilh posted to evolution genome tree by ssgong on 2009-01-30 13:12:51 as along with 5 people pablocarb inquil knaseanka aprasad dayjm
	A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. [My Copy] Molecular biology and evolution, Vol. 18, No. 5. (1 May 2001), pp. 691-699. by S. Whelan, N. Goldman posted to wag by ssgong on 2008-01-17 14:11:29 as along with 7 people calderonv BioNica michaelbarton bpb chrn gjuggler gisle
	The rapid generation of mutation data matrices from protein sequences. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 8, No. 3. (June 1992), pp. 275-282. by D. T. Jones, W. R. Taylor, J. M. Thornton posted to jtt by ssgong on 2008-01-17 14:08:02 as along with 2 people BioNica skumagai
	Recognition of functional sites in protein structures. [My Copy] J Mol Biol, Vol. 339, No. 3. (4 June 2004), pp. 607-633. by Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson posted to active site by ssgong on 2008-01-03 17:26:50 as along with 2 people qluo tjimenez
	Ultrafast shape recognition to search compound databases for similar molecular shapes. [My Copy] J Comput Chem (6 March 2007) by Pedro J J. Ballester, W Graham G. Richards posted to algorithm chemical comparison by ssgong on 2007-07-09 12:20:53 as along with 5 people medic0747 operon massivemayhem kintoki tjimenez

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disease	14
mutation	12
cancer	10
mapping	7
pdb	7
sequence	7
structure	7
uniprot	7
snp	6
p53	3
domain	2
evolution	2
moult	2
protein	2
snpeffect	2
to	2
active	1
algorithm	1
braf	1
chemical	1
code	1
comparison	1
crescendo	1
database	1
doublemap	1
erbb	1
esst	1
family	1
fersht	1
genetic	1
genome	1
hgmd	1
history	1
insulin	1
jenalib	1
jtt	1
kinase	1
k-ras	1
lung	1
mmdb	1
origin	1
pca	1
pdbsum	1
pupasuite	1
r	1
sap	1
signalling	1
site	1
software	1
somatic	1
somtic	1
stability	1
statistic	1
substitution	1
table	1
tree	1
variation	1
wag	1
website	1

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