Biological pattern formation: from basic mechanisms to complex structures Export

@article{citeulike:1396168, abstract = {The reliable development of highly complex organisms is an intriguing and fascinating problem. The genetic material is; as a rule; the same in each cell of an organism. How then do cells; under the influence of their common genes; produce spatial patterns? Simple models are discussed that describe the generation of patterns out of an initially nearly homogeneous state. They are based on nonlinear interactions of at least two chemicals and on their diffusion. The concepts of local autocatalysis and of long-range inhibition play a fundamental role. Numerical simulations show that the models account for many basic biological observations such as the regeneration of a pattern after excision of tissue or the production of regular (or nearly regular) arrays of organs during (or after) completion of growth. Very complex patterns can be generated in a reproducible way by hierarchical coupling of several such elementary reactions. Applications to animal coats and to the generation of polygonally shaped patterns are provided. It is further shown how to generate a strictly periodic pattern of units that themselves exhibit a complex and polar fine structure. This is illustrated by two examples: the assembly of photoreceptor cells in the eye of Drosophila and the positioning of leaves and axillary buds in a growing shoot. In both cases; the substructures have to achieve an internal polarity under the influence of some primary pattern-forming system existing in the fly's eye or in the plant. The fact that similar models can describe essential steps in organisms as distantly related as animals and plants suggests that they reveal some universal mechanisms.}, author = {Koch, A. J. and Meinhardt, H.}, citeulike-article-id = {1396168}, citeulike-linkout-0 = {http://dx.doi.org/10.1103/RevModPhys.66.1481}, citeulike-linkout-1 = {http://link.aps.org/abstract/RMP/v66/i4/p1481_1}, citeulike-linkout-2 = {http://link.aps.org/pdf/RMP/v66/i4/p1481_1}, comment = {Very good, detailed article about pattern formation using ODE approach.}, doi = {10.1103/RevModPhys.66.1481}, journal = {Reviews of Modern Physics}, keywords = {developement, diffusion, math, ode, patterns}, month = {October}, number = {4}, pages = {1481+}, posted-at = {2007-06-18 09:40:10}, priority = {0}, publisher = {American Physical Society}, title = {Biological pattern formation: from basic mechanisms to complex structures}, url = {http://dx.doi.org/10.1103/RevModPhys.66.1481}, volume = {66}, year = {1994} }

TY - JOUR ID - citeulike:1396168 L3 - citeulike-article-id:1396168 N2 - The reliable development of highly complex organisms is an intriguing and fascinating problem. The genetic material is; as a rule; the same in each cell of an organism. How then do cells; under the influence of their common genes; produce spatial patterns? Simple models are discussed that describe the generation of patterns out of an initially nearly homogeneous state. They are based on nonlinear interactions of at least two chemicals and on their diffusion. The concepts of local autocatalysis and of long-range inhibition play a fundamental role. Numerical simulations show that the models account for many basic biological observations such as the regeneration of a pattern after excision of tissue or the production of regular (or nearly regular) arrays of organs during (or after) completion of growth. Very complex patterns can be generated in a reproducible way by hierarchical coupling of several such elementary reactions. Applications to animal coats and to the generation of polygonally shaped patterns are provided. It is further shown how to generate a strictly periodic pattern of units that themselves exhibit a complex and polar fine structure. This is illustrated by two examples: the assembly of photoreceptor cells in the eye of Drosophila and the positioning of leaves and axillary buds in a growing shoot. In both cases; the substructures have to achieve an internal polarity under the influence of some primary pattern-forming system existing in the fly's eye or in the plant. The fact that similar models can describe essential steps in organisms as distantly related as animals and plants suggests that they reveal some universal mechanisms. IS - 4 JF - Reviews of Modern Physics TI - Biological pattern formation: from basic mechanisms to complex structures PB - American Physical Society VL - 66 SP - 1481 KW - developement KW - diffusion KW - math KW - ode KW - patterns N1 - Very good, detailed article about pattern formation using ODE approach. AU - Koch, AJ AU - Meinhardt, H PY - 1994/10// UR - http://dx.doi.org/10.1103/RevModPhys.66.1481 ER -