CiteULike: stajich's Nusbaum:C [10 articles]

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

Nature, Vol. 461, No. 7262. (09 September 2009), pp. 393-398.

by Brian J. Haas, Sophien Kamoun, Michael C. Zody, et al.Rays H. Y. Jiang, Robert E. Handsaker, Liliana M. Cano, Manfred Grabherr, Chinnappa D. Kodira, Sylvain Raffaele, Trudy Torto-Alalibo, Tolga O. Bozkurt, Audrey M. V. Ah-Fong, Lucia Alvarado, Vicky L. Anderson, Miles R. Armstrong, Anna Avrova, Laura Baxter, Jim Beynon, Petra C. Boevink, Stephanie R. Bollmann, Jorunn I. B. Bos, Vincent Bulone, Guohong Cai, Cahid Cakir, James C. Carrington, Megan Chawner, Lucio Conti, Stefano Costanzo, Richard Ewan, Noah Fahlgren, Michael A. Fischbach, Johanna Fugelstad, Eleanor M. Gilroy, Sante Gnerre, Pamela J. Green, Laura J. Grenville-Briggs, John Griffith, Niklaus J. Grunwald, Karolyn Horn, Neil R. Horner, Chia-Hui Hu, Edgar Huitema, Dong-Hoon Jeong, Alexandra M. E. Jones, Jonathan D. G. Jones, Richard W. Jones, Elinor K. Karlsson, Sridhara G. Kunjeti, Kurt Lamour, Zhenyu Liu, LiJun Ma, Daniel MacLean, Marcus C. Chibucos, Hayes McDonald, Jessica McWalters, Harold J. G. Meijer, William Morgan, Paul F. Morris, Carol A. Munro, Keith OâNeill, Manuel Ospina-Giraldo, Andres Pinzon, Leighton Pritchard, Bernard Ramsahoye, Qinghu Ren, Silvia Restrepo, Sourav Roy, Ari Sadanandom, Alon Savidor, Sebastian Schornack, David C. Schwartz, Ulrike D. Schumann, Ben Schwessinger, Lauren Seyer, Ted Sharpe, Cristina Silvar, Jing Song, David J. Studholme, Sean Sykes, Marco Thines, Peter J. I. van de Vondervoort, Vipaporn Phuntumart, Stephan Wawra, Rob Weide, Joe Win, Carolyn Young, Shiguo Zhou, William Fry, Blake C. Meyers, Pieter van West, Jean Ristaino, Francine Govers, Paul R. J. Birch, Stephen C. Whisson, Howard S. Judelson, Chad Nusbaum

posted to secretion rxlr plantpathogen phytophthora_infestans oomycete effectors crinkler by stajich on 2009-10-20 10:52:12 as

along with 10 people and 3 groups kiekyon diamantis bcondon ArtemPankin ppgardne jmanning2k dbk tomhebbron danmaclean rschulz Mycology Khavkin's lab Journal picks

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

Genome Biology, Vol. 10, No. 10. (1 October 2009), R103.

by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe

posted to shortread methods bioinformatics assembly by stajich on 2009-10-02 16:01:50 as

along with 10 people and 1 group djkt n00c azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson druvus neils Mycology

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3264-3269.

by Moran Yassour, Tommy Kaplan, Hunter B. Fraser, et al.Joshua Z. Levin, Jenna Pfiffner, Xian Adiconis, Gary Schroth, Shujun Luo, Irina Khrebtukova, Andreas Gnirke, Chad Nusbaum, Dawn-Anne Thompson, Nir Friedman, Aviv Regev

posted to resequencing solexa yeast by stajich on 2009-04-01 00:23:50 as

along with 8 people and 1 group hzoltan fstrozzi GustavoLacerda stubrown jfr GeeSharpMinor jmcq provero Mycology

ALLPATHS: De novo assembly of whole-genome shotgun microreads

Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820.

by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe

posted to assembly solexa by stajich on 2008-04-01 21:52:06 as

along with 23 people and 1 group ajsferreira n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus azazello hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology

Large-Scale Sequencing Reveals 21U-RNAs and Additional MicroRNAs and Endogenous siRNAs in C. elegans.

Cell, Vol. 127, No. 6. (15 December 2006), pp. 1193-1207.

by J. G. Ruby, C. Jan, C. Player, et al.M. J. Axtell, W. Lee, C. Nusbaum, H. Ge, D. P. Bartel

posted to caenorhabditis mirna noncoding_rna by stajich on 2008-03-31 19:09:45 as

along with 5 people and 3 groups thegoose2 tharris tardigrade andersbj cellison C. elegans / WormBase microRNA Mycology

Initial sequencing and comparative analysis of the mouse genome.

Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562.

by Mouse Genome Sequencing Consortium, Robert H. Waterston, Kerstin Lindblad-Toh, et al.Ewan Birney, Jane Rogers, Josep F. Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E. Antonarakis, John Attwood, Robert Baertsch, Jonathon Bailey, Karen Barlow, Stephan Beck, Eric Berry, Bruce Birren, Toby Bloom, Peer Bork, Marc Botcherby, Nicolas Bray, Michael R. Brent, Daniel G. Brown, Stephen D. Brown, Carol Bult, John Burton, Jonathan Butler, Robert D. Campbell, Piero Carninci, Simon Cawley, Francesca Chiaromonte, Asif T. Chinwalla, Deanna M. Church, Michele Clamp, Christopher Clee, Francis S. Collins, Lisa L. Cook, Richard R. Copley, Alan Coulson, Olivier Couronne, James Cuff, Val Curwen, Tim Cutts, Mark Daly, Robert David, Joy Davies, Kimberly D. Delehaunty, Justin Deri, Emmanouil T. Dermitzakis, Colin Dewey, Nicholas J. Dickens, Mark Diekhans, Sheila Dodge, Inna Dubchak, Diane M. Dunn, Sean R. Eddy, Laura Elnitski, Richard D. Emes, Pallavi Eswara, Eduardo Eyras, Adam Felsenfeld, Ginger A. Fewell, Paul Flicek, Karen Foley, Wayne N. Frankel, Lucinda A. Fulton, Robert S. Fulton, Terrence S. Furey, Diane Gage, Richard A. Gibbs, Gustavo Glusman, Sante Gnerre, Nick Goldman, Leo Goodstadt, Darren Grafham, Tina A. Graves, Eric D. Green, Simon Gregory, Roderic Guigó, Mark Guyer, Ross C. Hardison, David Haussler, Yoshihide Hayashizaki, LaDeana W. Hillier, Angela Hinrichs, Wratko Hlavina, Timothy Holzer, Fan Hsu, Axin Hua, Tim Hubbard, Adrienne Hunt, Ian Jackson, David B. Jaffe, L. Steven Johnson, Matthew Jones, Thomas A. Jones, Ann Joy, Michael Kamal, Elinor K. Karlsson, Donna Karolchik, Arkadiusz Kasprzyk, Jun Kawai, Evan Keibler, Cristyn Kells, W. James Kent, Andrew Kirby, Diana L. Kolbe, Ian Korf, Raju S. Kucherlapati, Edward J. Kulbokas, David Kulp, Tom Landers, J. P. Leger, Steven Leonard, Ivica Letunic, Rosie Levine, Jia Li, Ming Li, Christine Lloyd, Susan Lucas, Bin Ma, Donna R. Maglott, Elaine R. Mardis, Lucy Matthews, Evan Mauceli, John H. Mayer, Megan McCarthy, W. Richard McCombie, Stuart McLaren, Kirsten McLay, John D. McPherson, Jim Meldrim, Beverley Meredith, Jill P. Mesirov, Webb Miller, Tracie L. Miner, Emmanuel Mongin, Kate T. Montgomery, Michael Morgan, Richard Mott, James C. Mullikin, Donna M. Muzny, William E. Nash, Joanne O. Nelson, Michael N. Nhan, Robert Nicol, Zemin Ning, Chad Nusbaum, Michael J. O'Connor, Yasushi Okazaki, Karen Oliver, Emma Overton-Larty, Lior Pachter, Genís Parra, Kymberlie H. Pepin, Jane Peterson, Pavel Pevzner, Robert Plumb, Craig S. Pohl, Alex Poliakov, Tracy C. Ponce, Chris P. Ponting, Simon Potter, Michael Quail, Alexandre Reymond, Bruce A. Roe, Krishna M. Roskin, Edward M. Rubin, Alistair G. Rust, Ralph Santos, Victor Sapojnikov, Brian Schultz, Jörg Schultz, Matthias S. Schwartz, Scott Schwartz, Carol Scott, Steven Seaman, Steve Searle, Ted Sharpe, Andrew Sheridan, Ratna Shownkeen, Sarah Sims, Jonathan B. Singer, Guy Slater, Arian Smit, Douglas R. Smith, Brian Spencer, Arne Stabenau, Nicole Stange-Thomann, Charles Sugnet, Mikita Suyama, Glenn Tesler, Johanna Thompson, David Torrents, Evanne Trevaskis, John Tromp, Catherine Ucla, Abel Ureta-Vidal, Jade P. Vinson, Andrew C. Von Niederhausern, Claire M. Wade, Melanie Wall, Ryan J. Weber, Robert B. Weiss, Michael C. Wendl, Anthony P. West, Kris Wetterstrand, Raymond Wheeler, Simon Whelan, Jamey Wierzbowski, David Willey, Sophie Williams, Richard K. Wilson, Eitan Winter, Kim C. Worley, Dudley Wyman, Shan Yang, Shiaw-Pyng P. Yang, Evgeny M. Zdobnov, Michael C. Zody, Eric S. Lander

posted to comparative_genomics genome_paper mouse by stajich on 2007-12-16 01:02:37 as

along with 24 people and 2 groups rshe seb1 ajbattle jmanning2k timhubbard taroleo fisherp dkulp sdinka Cortel jwortman Dax42 aprasad ccots indigoviolet adepace treangen joshuashen djkt olympos hausen yoanjacquemin elfar kevinemamy EisenLab Mycology

Genome Sequence of Aedes aegypti, a Major Arbovirus Vector

Science, Vol. 316, No. 5832. (22 June 2007), pp. 1718-1723.

by Vishvanath Nene, Jennifer R. Wortman, Daniel Lawson, et al.Brian Haas, Chinnappa Kodira, Zhijian J. Tu, Brendan Loftus, Zhiyong Xi, Karyn Megy, Manfred Grabherr, Quinghu Ren, Evgeny M. Zdobnov, Neil F. Lobo, Kathryn S. Campbell, Susan E. Brown, Maria F. Bonaldo, Jingsong Zhu, Steven P. Sinkins, David G. Hogenkamp, Paolo Amedeo, Peter Arensburger, Peter W. Atkinson, Shelby Bidwell, Jim Biedler, Ewan Birney, Robert V. Bruggner, Javier Costas, Monique R. Coy, Jonathan Crabtree, Matt Crawford, Becky Debruyn, David Decaprio, Karin Eiglmeier, Eric Eisenstadt, Hamza El-Dorry, William M. Gelbart, Suely L. Gomes, Martin Hammond, Linda I. Hannick, James R. Hogan, Michael H. Holmes, David Jaffe, J. Spencer Johnston, Ryan C. Kennedy, Hean Koo, Saul Kravitz, Evgenia V. Kriventseva, David Kulp, Kurt Labutti, Eduardo Lee, Song Li, Diane D. Lovin, Chunhong Mao, Evan Mauceli, Carlos F. M. Menck, Jason R. Miller, Philip Montgomery, Akio Mori, Ana L. Nascimento, Horacio F. Naveira, Chad Nusbaum, Sinead O'Leary, Joshua Orvis, Mihaela Pertea, Hadi Quesneville, Kyanne R. Reidenbach, Yu-Hui Rogers, Charles W. Roth, Jennifer R. Schneider, Michael Schatz, Martin Shumway, Mario Stanke, Eric O. Stinson, Jose M. C. Tubio, Janice P. Vanzee, Sergio Verjovski-Almeida, Doreen Werner, Owen White, Stefan Wyder, Qiandong Zeng, Qi Zhao, Yongmei Zhao, Catherine A. Hill, Alexander S. Raikhel, Marcelo B. Soares, Dennis L. Knudson, Norman H. Lee, James Galagan, Steven L. Salzberg, Ian T. Paulsen, George Dimopoulos, Frank H. Collins, Bruce Birren, Claire M. Fraser-Liggett, David W. Severson

posted to aedes genome_paper mosquito by stajich on 2007-12-16 01:01:12 as

along with 3 people and 3 groups avilella operon dpollard Ensembl Compara citations EisenLab Mycology

The genome sequence of the rice blast fungus Magnaporthe grisea

Nature, Vol. 434, No. 7036., pp. 980-986.

posted to fungi genome genome_paper magnaporthe sequencing by stajich on 2007-12-12 19:24:27 as

along with 4 people and 1 group GustavoLacerda alephXV jwortman alexl Mycology

The genome sequence of the filamentous fungus Neurospora crassa.

Nature, Vol. 422, No. 6934. (24 April 2003), pp. 859-868.

by James E. Galagan, Sarah E. Calvo, Katherine A. Borkovich, et al.Eric U. Selker, Nick D. Read, David Jaffe, William FitzHugh, Li-Jun J. Ma, Serge Smirnov, Seth Purcell, Bushra Rehman, Timothy Elkins, Reinhard Engels, Shunguang Wang, Cydney B. Nielsen, Jonathan Butler, Matthew Endrizzi, Dayong Qui, Peter Ianakiev, Deborah Bell-Pedersen, Mary Anne A. Nelson, Margaret Werner-Washburne, Claude P. Selitrennikoff, John A. Kinsey, Edward L. Braun, Alex Zelter, Ulrich Schulte, Gregory O. Kothe, Gregory Jedd, Werner Mewes, Chuck Staben, Edward Marcotte, David Greenberg, Alice Roy, Karen Foley, Jerome Naylor, Nicole Stange-Thomann, Robert Barrett, Sante Gnerre, Michael Kamal, Manolis Kamvysselis, Evan Mauceli, Cord Bielke, Stephen Rudd, Dmitrij Frishman, Svetlana Krystofova, Carolyn Rasmussen, Robert L. Metzenberg, David D. Perkins, Scott Kroken, Carlo Cogoni, Giuseppe Macino, David Catcheside, Weixi Li, Robert J. Pratt, Stephen A. Osmani, Colin P. DeSouza, Louise Glass, Marc J. Orbach, J. Andrew Berglund, Rodger Voelker, Oded Yarden, Michael Plamann, Stephan Seiler, Jay Dunlap, Alan Radford, Rodolfo Aramayo, Donald O. Natvig, Lisa A. Alex, Gertrud Mannhaupt, Daniel J. Ebbole, Michael Freitag, Ian Paulsen, Matthew S. Sachs, Eric S. Lander, Chad Nusbaum, Bruce Birren

posted to fungi genome_paper neurospora by stajich on 2007-12-12 19:02:30 as read

along with 9 people and 1 group yangjustinc bpcusack JeremyZucker wimufi sdinka jwortman alexl GustavoLacerda bootsy Mycology

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

Nature, Vol. 444, No. 7115., pp. 97-101.

by Jörg Kämper, Regine Kahmann, Michael Bölker, et al.Li-Jun Ma, Thomas Brefort, Barry J. Saville, Flora Banuett, James W. Kronstad, Scott E. Gold, Olaf Müller, Michael H. Perlin, Han A. B. Wösten, Ronald de Vries, José Ruiz-Herrera, Cristina G. Reynaga-Peña, Karen Snetselaar, Michael Mccann, José Pérez-Martín, Michael Feldbrügge, Christoph W. Basse, Gero Steinberg, Jose I. Ibeas, William Holloman, Plinio Guzman, Mark Farman, Jason E. Stajich, Rafael Sentandreu, Juan M. González-Prieto, John C. Kennell, Lazaro Molina, Jan Schirawski, Artemio Mendoza-Mendoza, Doris Greilinger, Karin Münch, Nicole Rössel, Mario Scherer, Miroslav Vraneš, Oliver Ladendorf, Volker Vincon, Uta Fuchs, Björn Sandrock, Shaowu Meng, Eric C. H. Ho, Matt J. Cahill, Kylie J. Boyce, Jana Klose, Steven J. Klosterman, Heine J. Deelstra, Lucila Ortiz-Castellanos, Weixi Li, Patricia Sanchez-Alonso, Peter H. Schreier, Isolde Häuser-Hahn, Martin Vaupel, Edda Koopmann, Gabi Friedrich, Hartmut Voss, Thomas Schlüter, Jonathan Margolis, Darren Platt, Candace Swimmer, Andreas Gnirke, Feng Chen, Valentina Vysotskaia, Gertrud Mannhaupt, Ulrich Güldener, Martin Münsterkötter, Dirk Haase, Matthias Oesterheld, Hans-Werner Mewes, Evan W. Mauceli, David Decaprio, Claire M. Wade, Jonathan Butler, Sarah Young, David B. Jaffe, Sarah Calvo, Chad Nusbaum, James Galagan, Bruce W. Birren

posted to genome genome_paper plantpathogen ustilago fungi by stajich on 2006-12-07 01:32:24 as read

along with 4 people GustavoLacerda kreibich alexl bootsy

	Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans [My Copy] Nature, Vol. 461, No. 7262. (09 September 2009), pp. 393-398. by Brian J. Haas, Sophien Kamoun, Michael C. Zody, et al.Rays H. Y. Jiang, Robert E. Handsaker, Liliana M. Cano, Manfred Grabherr, Chinnappa D. Kodira, Sylvain Raffaele, Trudy Torto-Alalibo, Tolga O. Bozkurt, Audrey M. V. Ah-Fong, Lucia Alvarado, Vicky L. Anderson, Miles R. Armstrong, Anna Avrova, Laura Baxter, Jim Beynon, Petra C. Boevink, Stephanie R. Bollmann, Jorunn I. B. Bos, Vincent Bulone, Guohong Cai, Cahid Cakir, James C. Carrington, Megan Chawner, Lucio Conti, Stefano Costanzo, Richard Ewan, Noah Fahlgren, Michael A. Fischbach, Johanna Fugelstad, Eleanor M. Gilroy, Sante Gnerre, Pamela J. Green, Laura J. Grenville-Briggs, John Griffith, Niklaus J. Grunwald, Karolyn Horn, Neil R. Horner, Chia-Hui Hu, Edgar Huitema, Dong-Hoon Jeong, Alexandra M. E. Jones, Jonathan D. G. Jones, Richard W. Jones, Elinor K. Karlsson, Sridhara G. Kunjeti, Kurt Lamour, Zhenyu Liu, LiJun Ma, Daniel MacLean, Marcus C. Chibucos, Hayes McDonald, Jessica McWalters, Harold J. G. Meijer, William Morgan, Paul F. Morris, Carol A. Munro, Keith OâNeill, Manuel Ospina-Giraldo, Andres Pinzon, Leighton Pritchard, Bernard Ramsahoye, Qinghu Ren, Silvia Restrepo, Sourav Roy, Ari Sadanandom, Alon Savidor, Sebastian Schornack, David C. Schwartz, Ulrike D. Schumann, Ben Schwessinger, Lauren Seyer, Ted Sharpe, Cristina Silvar, Jing Song, David J. Studholme, Sean Sykes, Marco Thines, Peter J. I. van de Vondervoort, Vipaporn Phuntumart, Stephan Wawra, Rob Weide, Joe Win, Carolyn Young, Shiguo Zhou, William Fry, Blake C. Meyers, Pieter van West, Jean Ristaino, Francine Govers, Paul R. J. Birch, Stephen C. Whisson, Howard S. Judelson, Chad Nusbaum posted to secretion rxlr plantpathogen phytophthora_infestans oomycete effectors crinkler by stajich on 2009-10-20 10:52:12 as along with 10 people and 3 groups kiekyon diamantis bcondon ArtemPankin ppgardne jmanning2k dbk tomhebbron danmaclean rschulz Mycology Khavkin's lab Journal picks
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to shortread methods bioinformatics assembly by stajich on 2009-10-02 16:01:50 as along with 10 people and 1 group djkt n00c azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson druvus neils Mycology
	Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3264-3269. by Moran Yassour, Tommy Kaplan, Hunter B. Fraser, et al.Joshua Z. Levin, Jenna Pfiffner, Xian Adiconis, Gary Schroth, Shujun Luo, Irina Khrebtukova, Andreas Gnirke, Chad Nusbaum, Dawn-Anne Thompson, Nir Friedman, Aviv Regev posted to resequencing solexa yeast by stajich on 2009-04-01 00:23:50 as along with 8 people and 1 group hzoltan fstrozzi GustavoLacerda stubrown jfr GeeSharpMinor jmcq provero Mycology
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to assembly solexa by stajich on 2008-04-01 21:52:06 as along with 23 people and 1 group ajsferreira n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus azazello hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology
	Large-Scale Sequencing Reveals 21U-RNAs and Additional MicroRNAs and Endogenous siRNAs in C. elegans. [My Copy] Cell, Vol. 127, No. 6. (15 December 2006), pp. 1193-1207. by J. G. Ruby, C. Jan, C. Player, et al.M. J. Axtell, W. Lee, C. Nusbaum, H. Ge, D. P. Bartel posted to caenorhabditis mirna noncoding_rna by stajich on 2008-03-31 19:09:45 as along with 5 people and 3 groups thegoose2 tharris tardigrade andersbj cellison C. elegans / WormBase microRNA Mycology
	Initial sequencing and comparative analysis of the mouse genome. [My Copy] Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562. by Mouse Genome Sequencing Consortium, Robert H. Waterston, Kerstin Lindblad-Toh, et al.Ewan Birney, Jane Rogers, Josep F. Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E. Antonarakis, John Attwood, Robert Baertsch, Jonathon Bailey, Karen Barlow, Stephan Beck, Eric Berry, Bruce Birren, Toby Bloom, Peer Bork, Marc Botcherby, Nicolas Bray, Michael R. Brent, Daniel G. Brown, Stephen D. Brown, Carol Bult, John Burton, Jonathan Butler, Robert D. Campbell, Piero Carninci, Simon Cawley, Francesca Chiaromonte, Asif T. Chinwalla, Deanna M. Church, Michele Clamp, Christopher Clee, Francis S. Collins, Lisa L. Cook, Richard R. Copley, Alan Coulson, Olivier Couronne, James Cuff, Val Curwen, Tim Cutts, Mark Daly, Robert David, Joy Davies, Kimberly D. Delehaunty, Justin Deri, Emmanouil T. Dermitzakis, Colin Dewey, Nicholas J. Dickens, Mark Diekhans, Sheila Dodge, Inna Dubchak, Diane M. Dunn, Sean R. Eddy, Laura Elnitski, Richard D. Emes, Pallavi Eswara, Eduardo Eyras, Adam Felsenfeld, Ginger A. Fewell, Paul Flicek, Karen Foley, Wayne N. Frankel, Lucinda A. Fulton, Robert S. Fulton, Terrence S. Furey, Diane Gage, Richard A. Gibbs, Gustavo Glusman, Sante Gnerre, Nick Goldman, Leo Goodstadt, Darren Grafham, Tina A. Graves, Eric D. Green, Simon Gregory, Roderic Guigó, Mark Guyer, Ross C. Hardison, David Haussler, Yoshihide Hayashizaki, LaDeana W. Hillier, Angela Hinrichs, Wratko Hlavina, Timothy Holzer, Fan Hsu, Axin Hua, Tim Hubbard, Adrienne Hunt, Ian Jackson, David B. Jaffe, L. Steven Johnson, Matthew Jones, Thomas A. Jones, Ann Joy, Michael Kamal, Elinor K. Karlsson, Donna Karolchik, Arkadiusz Kasprzyk, Jun Kawai, Evan Keibler, Cristyn Kells, W. James Kent, Andrew Kirby, Diana L. Kolbe, Ian Korf, Raju S. Kucherlapati, Edward J. Kulbokas, David Kulp, Tom Landers, J. P. Leger, Steven Leonard, Ivica Letunic, Rosie Levine, Jia Li, Ming Li, Christine Lloyd, Susan Lucas, Bin Ma, Donna R. Maglott, Elaine R. Mardis, Lucy Matthews, Evan Mauceli, John H. Mayer, Megan McCarthy, W. Richard McCombie, Stuart McLaren, Kirsten McLay, John D. McPherson, Jim Meldrim, Beverley Meredith, Jill P. Mesirov, Webb Miller, Tracie L. Miner, Emmanuel Mongin, Kate T. Montgomery, Michael Morgan, Richard Mott, James C. Mullikin, Donna M. Muzny, William E. Nash, Joanne O. Nelson, Michael N. Nhan, Robert Nicol, Zemin Ning, Chad Nusbaum, Michael J. O'Connor, Yasushi Okazaki, Karen Oliver, Emma Overton-Larty, Lior Pachter, Genís Parra, Kymberlie H. Pepin, Jane Peterson, Pavel Pevzner, Robert Plumb, Craig S. Pohl, Alex Poliakov, Tracy C. Ponce, Chris P. Ponting, Simon Potter, Michael Quail, Alexandre Reymond, Bruce A. Roe, Krishna M. Roskin, Edward M. Rubin, Alistair G. Rust, Ralph Santos, Victor Sapojnikov, Brian Schultz, Jörg Schultz, Matthias S. Schwartz, Scott Schwartz, Carol Scott, Steven Seaman, Steve Searle, Ted Sharpe, Andrew Sheridan, Ratna Shownkeen, Sarah Sims, Jonathan B. Singer, Guy Slater, Arian Smit, Douglas R. Smith, Brian Spencer, Arne Stabenau, Nicole Stange-Thomann, Charles Sugnet, Mikita Suyama, Glenn Tesler, Johanna Thompson, David Torrents, Evanne Trevaskis, John Tromp, Catherine Ucla, Abel Ureta-Vidal, Jade P. Vinson, Andrew C. Von Niederhausern, Claire M. Wade, Melanie Wall, Ryan J. Weber, Robert B. Weiss, Michael C. Wendl, Anthony P. West, Kris Wetterstrand, Raymond Wheeler, Simon Whelan, Jamey Wierzbowski, David Willey, Sophie Williams, Richard K. Wilson, Eitan Winter, Kim C. Worley, Dudley Wyman, Shan Yang, Shiaw-Pyng P. Yang, Evgeny M. Zdobnov, Michael C. Zody, Eric S. Lander posted to comparative_genomics genome_paper mouse by stajich on 2007-12-16 01:02:37 as along with 24 people and 2 groups rshe seb1 ajbattle jmanning2k timhubbard taroleo fisherp dkulp sdinka Cortel jwortman Dax42 aprasad ccots indigoviolet adepace treangen joshuashen djkt olympos hausen yoanjacquemin elfar kevinemamy EisenLab Mycology
	Genome Sequence of Aedes aegypti, a Major Arbovirus Vector [My Copy] Science, Vol. 316, No. 5832. (22 June 2007), pp. 1718-1723. by Vishvanath Nene, Jennifer R. Wortman, Daniel Lawson, et al.Brian Haas, Chinnappa Kodira, Zhijian J. Tu, Brendan Loftus, Zhiyong Xi, Karyn Megy, Manfred Grabherr, Quinghu Ren, Evgeny M. Zdobnov, Neil F. Lobo, Kathryn S. Campbell, Susan E. Brown, Maria F. Bonaldo, Jingsong Zhu, Steven P. Sinkins, David G. Hogenkamp, Paolo Amedeo, Peter Arensburger, Peter W. Atkinson, Shelby Bidwell, Jim Biedler, Ewan Birney, Robert V. Bruggner, Javier Costas, Monique R. Coy, Jonathan Crabtree, Matt Crawford, Becky Debruyn, David Decaprio, Karin Eiglmeier, Eric Eisenstadt, Hamza El-Dorry, William M. Gelbart, Suely L. Gomes, Martin Hammond, Linda I. Hannick, James R. Hogan, Michael H. Holmes, David Jaffe, J. Spencer Johnston, Ryan C. Kennedy, Hean Koo, Saul Kravitz, Evgenia V. Kriventseva, David Kulp, Kurt Labutti, Eduardo Lee, Song Li, Diane D. Lovin, Chunhong Mao, Evan Mauceli, Carlos F. M. Menck, Jason R. Miller, Philip Montgomery, Akio Mori, Ana L. Nascimento, Horacio F. Naveira, Chad Nusbaum, Sinead O'Leary, Joshua Orvis, Mihaela Pertea, Hadi Quesneville, Kyanne R. Reidenbach, Yu-Hui Rogers, Charles W. Roth, Jennifer R. Schneider, Michael Schatz, Martin Shumway, Mario Stanke, Eric O. Stinson, Jose M. C. Tubio, Janice P. Vanzee, Sergio Verjovski-Almeida, Doreen Werner, Owen White, Stefan Wyder, Qiandong Zeng, Qi Zhao, Yongmei Zhao, Catherine A. Hill, Alexander S. Raikhel, Marcelo B. Soares, Dennis L. Knudson, Norman H. Lee, James Galagan, Steven L. Salzberg, Ian T. Paulsen, George Dimopoulos, Frank H. Collins, Bruce Birren, Claire M. Fraser-Liggett, David W. Severson posted to aedes genome_paper mosquito by stajich on 2007-12-16 01:01:12 as along with 3 people and 3 groups avilella operon dpollard Ensembl Compara citations EisenLab Mycology
	The genome sequence of the rice blast fungus Magnaporthe grisea [My Copy] Nature, Vol. 434, No. 7036., pp. 980-986. by Ralph A. Dean, Nicholas J. Talbot, Daniel J. Ebbole, et al.Mark L. Farman, Thomas K. Mitchell, Marc J. Orbach, Michael Thon, Resham Kulkarni, Jin-Rong Xu, Huaqin Pan, Nick D. Read, Yong-Hwan Lee, Ignazio Carbone, Doug Brown, Yeon Y. Oh, Nicole Donofrio, Jun S. Jeong, Darren M. Soanes, Slavica Djonovic, Elena Kolomiets, Cathryn Rehmeyer, Weixi Li, Michael Harding, Soonok Kim, Marc-Henri Lebrun, Heidi Bohnert, Sean Coughlan, Jonathan Butler, Sarah Calvo, Li-Jun Ma, Robert Nicol, Seth Purcell, Chad Nusbaum, James E. Galagan, Bruce W. Birren posted to fungi genome genome_paper magnaporthe sequencing by stajich on 2007-12-12 19:24:27 as along with 4 people and 1 group GustavoLacerda alephXV jwortman alexl Mycology
	The genome sequence of the filamentous fungus Neurospora crassa. [My Copy] Nature, Vol. 422, No. 6934. (24 April 2003), pp. 859-868. by James E. Galagan, Sarah E. Calvo, Katherine A. Borkovich, et al.Eric U. Selker, Nick D. Read, David Jaffe, William FitzHugh, Li-Jun J. Ma, Serge Smirnov, Seth Purcell, Bushra Rehman, Timothy Elkins, Reinhard Engels, Shunguang Wang, Cydney B. Nielsen, Jonathan Butler, Matthew Endrizzi, Dayong Qui, Peter Ianakiev, Deborah Bell-Pedersen, Mary Anne A. Nelson, Margaret Werner-Washburne, Claude P. Selitrennikoff, John A. Kinsey, Edward L. Braun, Alex Zelter, Ulrich Schulte, Gregory O. Kothe, Gregory Jedd, Werner Mewes, Chuck Staben, Edward Marcotte, David Greenberg, Alice Roy, Karen Foley, Jerome Naylor, Nicole Stange-Thomann, Robert Barrett, Sante Gnerre, Michael Kamal, Manolis Kamvysselis, Evan Mauceli, Cord Bielke, Stephen Rudd, Dmitrij Frishman, Svetlana Krystofova, Carolyn Rasmussen, Robert L. Metzenberg, David D. Perkins, Scott Kroken, Carlo Cogoni, Giuseppe Macino, David Catcheside, Weixi Li, Robert J. Pratt, Stephen A. Osmani, Colin P. DeSouza, Louise Glass, Marc J. Orbach, J. Andrew Berglund, Rodger Voelker, Oded Yarden, Michael Plamann, Stephan Seiler, Jay Dunlap, Alan Radford, Rodolfo Aramayo, Donald O. Natvig, Lisa A. Alex, Gertrud Mannhaupt, Daniel J. Ebbole, Michael Freitag, Ian Paulsen, Matthew S. Sachs, Eric S. Lander, Chad Nusbaum, Bruce Birren posted to fungi genome_paper neurospora by stajich on 2007-12-12 19:02:30 as along with 9 people and 1 group yangjustinc bpcusack JeremyZucker wimufi sdinka jwortman alexl GustavoLacerda bootsy Mycology
	Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis [My Copy] Nature, Vol. 444, No. 7115., pp. 97-101. by Jörg Kämper, Regine Kahmann, Michael Bölker, et al.Li-Jun Ma, Thomas Brefort, Barry J. Saville, Flora Banuett, James W. Kronstad, Scott E. Gold, Olaf Müller, Michael H. Perlin, Han A. B. Wösten, Ronald de Vries, José Ruiz-Herrera, Cristina G. Reynaga-Peña, Karen Snetselaar, Michael Mccann, José Pérez-Martín, Michael Feldbrügge, Christoph W. Basse, Gero Steinberg, Jose I. Ibeas, William Holloman, Plinio Guzman, Mark Farman, Jason E. Stajich, Rafael Sentandreu, Juan M. González-Prieto, John C. Kennell, Lazaro Molina, Jan Schirawski, Artemio Mendoza-Mendoza, Doris Greilinger, Karin Münch, Nicole Rössel, Mario Scherer, Miroslav Vraneš, Oliver Ladendorf, Volker Vincon, Uta Fuchs, Björn Sandrock, Shaowu Meng, Eric C. H. Ho, Matt J. Cahill, Kylie J. Boyce, Jana Klose, Steven J. Klosterman, Heine J. Deelstra, Lucila Ortiz-Castellanos, Weixi Li, Patricia Sanchez-Alonso, Peter H. Schreier, Isolde Häuser-Hahn, Martin Vaupel, Edda Koopmann, Gabi Friedrich, Hartmut Voss, Thomas Schlüter, Jonathan Margolis, Darren Platt, Candace Swimmer, Andreas Gnirke, Feng Chen, Valentina Vysotskaia, Gertrud Mannhaupt, Ulrich Güldener, Martin Münsterkötter, Dirk Haase, Matthias Oesterheld, Hans-Werner Mewes, Evan W. Mauceli, David Decaprio, Claire M. Wade, Jonathan Butler, Sarah Young, David B. Jaffe, Sarah Calvo, Chad Nusbaum, James Galagan, Bruce W. Birren posted to genome genome_paper plantpathogen ustilago fungi by stajich on 2006-12-07 01:32:24 as along with 4 people GustavoLacerda kreibich alexl bootsy

stajich's Nusbaum:C [10 articles] Export

stajich's tags

fungi	224
evolution	113
methods	68
multicellular	66
bioinformatics	61
genome	61
yeast	59
aspergillus	58
saccharomyces	46
neurospora	42
intron	41
cell_wall	40
phylogenetics	39
development	35
mirna	35
molecular_evolution	31
smallrna	30
noncoding_rna	30
phylogeny	29
cryptococcus	29
drosophila	29
comparative_genomics	28
basidiomycota	27
gene_expression	27
population_genomics	25
genome_evolution	25
pathogen	24
rnai	23
nextgensequencing	22
population_genetics	22
phylogenomics	21
sexual_development	21
sequencing	21
speciation	20
splicing	19
annotation	18
cell_surface	18
solexa	17
rna_silencing	17
alternative_splicing	17
filamentous	17
coccipaper	17
positive_selection	16
bacteria	16
metazoa	16
genome_paper	16
computational_biology	15
duplication	14
intron_evolution	13
plant	13
gene_family	13
smallrna_paper	13
assembly	12
meiosis	12
human	12
intron_loss	12
genome_annotation	12
gene_duplication	12
alignment	12
plantpathogen	12
synteny	11
gene_tree	11
coccidioides	11
genomics	11
pombe	11
shortread	11
transcription	11
virus	11
gene	10
coprinus	10
antifungal	10
horizontal_gene_transfer	10
selection	10
eukaryota	10
rna	10
regulation	10
mating_genes	10
mushroom	10
intron_gain	9
zygomycota	9
silencing	9
gene_prediction	9
selection_test	9
mating_type	9
chytrid	9
beta-glucan	8
database	8
species_tree	8
caenorhabditis	8
recombination	8
gene_finding	8
ascomycota	8
repeats	8
candida	8
dictyostelium	8
microarray	7
cellulose_synthase	7
batrachochytrium	7
halophile	7
cellular_signaling	7
marine	7
noncoding	7
symbiosis	7
signaling	7
light_response	7
halophilic	7
virulence_factor	7
virulence	7
evodevo	7
hypersaline	7
mycovirus	7
software	7
binding_site	7
plants	7
metagenomics	7
oomycete	7
polymorphism	6
est	6
hydrophobin	6
mycorrhizal	6
adhesion	6
transcription_factor	6
mutation_rate	6
spore	6
toxin	6
ant	6
mrna	6
gene_regulation	6
volvox	6
coevolution	6
snp	6
chipseq	6
sex_chromosome	6
prediction	6
ustilago	6
penicillium	6
posttranscriptional	5
metazoan	5
codon_model	5
protein	5
secondary_metabolite	5
statistics	5
protein_evolution	5
ecology	5
transposable_elements	5
rip	5
rnaseq	5
mutalism	5
review	5
schizophyllum	5
paml	5
microsporidia	5
stress_response	5
codon_bias	5
transposon	5
psychrophile	5
rhizopus	5
p450	5
resequencing	5
snorna	5
environmental_microbiology	5
rna_gene	5
meiotic_silencing	5
nematode	4
dna	4
orthology	4
enzyme	4
cis-regulatory	4
animal	4
gene_silencing	4
tree	4
systematics	4
cryptic_species	4
podospora	4
blastomyces	4
sugar	4
adaptation	4
transcriptional_regulation	4
histoplasma	4
ncrna	4
phylogenetic_marker_selection	4
smut	4
msud	4
secreted	4
sirna	4
antisense_transcription	4
infection	4
morphology	4
moniliophthora	4
hyphal_growth	4
glucan	4
dsrna	4
dimorphism	4
chitin	4
mapping	4
sequence_analysis	4
flagella	4
whole_genome	4
simulation	4
asexual_development	4
comparative	4
proteomics	4
infectious_disease	4
tree_reconcilation	4
phanerochaete_chrysosporium	4
microbial	4
pheremone	4
multiple_sequence_alignment	3
arabidopsis	3
nuclear_export	3
microbotryum	3
riboswitch	3
ascosphaera	3
extremophile	3
honeybee	3
circadian	3
expansion	3
crystalstructure	3
domestication	3
copy_number_variation	3
amanita	3
biosynthesis	3
resistance	3
disease	3
receptor	3
cooperation	3
variation	3
biogenesis	3
browser	3
paralogs	3
transporter	3
phytophthora	3
centromere	3
rnaworld	3
mammal	3
hyphal	3
drug_resistance	3
plant-microbe	3
septin	3
frog	3
mosquito	3
protein_localization	3
protist	3
apicomplexa	3
mucor	3
regulatory_evolution	3
genotype	3
dicer	3
motif	3
conidial	3
trichoderma	3
trna	3
photoreceptor	3
network	3
illumina	3
promotor	3
fungus	3
evolutionary_theory	3
diversity	3
ascospore	3
nmd	3
454	3
argonaute	3
anopheles	3
rdna	3
thermophile	3
defense	3
cellulase	3
chytridgenomepaper	3
fusarium	3
adaptive	3
combiners	3
magnaporthe	3
opisthokont	3
phylogenetic_profiling	3
neurospora_tetrasperma	3
retrotransposon	2
pezizomycete	2
primate	2
centrosome	2
mating_systems	2
soil	2
reconciliation	2
complexity	2
funding	2
coelomata	2
gene_network	2
telomerase	2
phylogeography	2
growth	2
blogging	2
bioremediation	2
phycomyces	2
character_evolution	2
iron	2
ectomycorrhizal	2
apoptosis	2
ecdysozoa	2
module	2
chitin_synthase	2
cacao	2
het_loci	2
transcript	2
kinase	2
comparison	2
microscopy	2
secretion	2
chlamydomonas	2
imaging	2
cell_wall_integrity	2
bioperl	2
puccinia	2
alpha_amylase	2
rearrangement	2
rnasep	2
antisense	2
fractal	2
expression	2
aquatic	2
analysis	2
algae	2
maize	2
dothideomycete	2
pirna	2
sexual_selection	2
g-proteins	2
test	2
translational_control	2
algorithm	2
cellulose	2
moss	2
array	2
germination	2
visualization	2
keritinophilic	2
cell_wall_genes	2
hmm	2
wheat	2
publishing	2
penicillin	2
phanerochaete	2
witchesbroom	2
folding	2
infrastructure	2
photosynthesis	2
supertree	2
genome_duplication	2
ribosomal	2
phenotypic	2
cold	2
divergence_time	2
mitochondria	2
news	2
coalescent	2
mycelia	2
reconstruction	2
policy	2
natural_selection	2
qtl	2
automation	2
nuclear	2
glucanase	2
notch	2
mycotoxin	2
fks1	2
laccaria	2
pathway_construction	2
heterokaryon	2
neutral	2
ribosomes	2
science	2
apicomplexia	2
utr	2
nrps	2
woroninbody	2
septalplug	2
treeoflife	2
its_sequence	2
12flies	2
linkage	2
cytochrome	2
floculation	2
cryphonectria	2
functional_prediction	2
endophyte	2
rotting	2
htg	2
secretory	2
senescence	2
chocolate	1
phylocode	1
epistasis	1
laea	1
positive_selecion	1
carbon_footprint	1
fruitingbody	1
melanin	1
theory	1
cocoa	1
cell_wall_proteins	1
gh6	1
hydra	1
ancient_dna	1
divergence	1
excavata	1
conservation	1
parsimony	1
tbrucei	1
uorf	1
coral	1
rxlr	1
spombe	1
incompatibility	1
journal	1
mouse	1
morphogenesis	1
model_system	1
classification	1
malaria	1
cospeciation	1
pichia	1
spindlepolebody	1
species	1
sequence	1
pgm	1
ensemblcompara	1
fungal_pathogens	1
chemical_genomics	1
imprinting	1
ergosterol	1
amphibian	1
amino_acid	1
heterozygosity	1
prion	1
divergent_genes	1
archea	1
databases	1
medical	1
modernsynthesis	1
biofilm	1
rodent	1
wiki	1
genetic_screen	1
site	1
ageing	1
sponge	1
corrie	1
molecular	1
heat_shock	1
co-evolution	1
aging	1
peroxisomes	1
mutagenesis	1
nucleus	1
phagocytosis	1
lab_tools	1
wasp	1
ccd	1
rad50	1
parasite	1
hydrogenase	1
selfing	1
rust	1
allergen	1
septa	1
agrobacterium	1
aedes	1
cgh	1
armillaria	1
screen	1
phyloinformatics	1
heterochromatin	1
coccipopgen	1
validation	1
mytilus	1
penicillium_marneffei	1
ltr	1
lateral_gene_transfer	1
diatom	1
live_imaging	1
knock-out	1
animal_evolution	1
dating	1
lineage-specific	1
airborne	1
jakobid	1
vertebrate	1
structure	1
azole	1
gui	1
prokaryotes	1
paracoccidioides	1
bdpearl	1
dandruff	1
ecological_speciation	1
rna_binding	1
fungicide	1
engineering	1
coal	1