stajich's library 962 articles Export

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	Evaluation of next generation sequencing platforms for population targeted sequencing studies. [My Copy] Genome biology, Vol. 10, No. 3. (2009), R32. by Olivier Harismendy, Pauline C. Ng, Robert L. Strausberg, et al.Xiaoyun Wang, Timothy B. Stockwell, Karen Y. Beeson, Nicholas J. Schork, Sarah S. Murray, Eric J. Topol, Samuel Levy, Kelly A. Frazer posted to nextgensequencing population_genomics sequencing by stajich on 2009-04-13 21:36:39 as along with 24 people and 2 groups jfr hzoltan dbensasson GustavoLacerda adijr agbiotec jgill darian jandot n00c jonilaserson maren inesdesantiago mlog ppgardne kiekyon michaelbarton idoerg skembel giovanni druvus lwaldron djkt natstreet Journal picks Mycology
	Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster [My Copy] Genetics, Vol. 179, No. 1. (1 May 2008), pp. 455-473. by Thomas L. Turner, Mia T. Levine, Melissa L. Eckert, David J. Begun posted to adaptation clinal drosophila by stajich on 2008-05-21 04:40:09 as along with 2 people and 2 groups emptyhb pradiptaray Mycology EisenLab
	Divergent adaptation promotes reproductive isolation among experimental populations of the filamentous fungus Neurospora [My Copy] BMC Evolutionary Biology, Vol. 8 (31 January 2008), 35. by Jeremy R. Dettman, James B. Anderson, Linda M. Kohn posted to adaptation experimental_evolution neurospora by stajich on 2008-02-04 21:27:49 as along with 1 person and 1 group dbensasson Mycology
	Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster [My Copy] Genetics (3 February 2008), genetics.107.082032. by Patricia J. Wittkopp, Belinda K. Haerum, Andrew G. Clark posted to cis-regulatory transcription by stajich on 2008-02-04 08:13:01 as along with 5 people and 3 groups brant djkt mimulus_99 dpollard caseybrown EisenLab cis-regulatory-evolution RockmanLab
	The frailty of adaptive hypotheses for the origins of organismal complexity. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104 Suppl 1, No. Suppl 1. (15 May 2007), pp. 8597-8604. by Michael Lynch posted to adaptive evolution by stajich on 2007-05-22 06:37:34 as along with 7 people and 1 group operon robfsouza jjray stevanspringer shaviro margaritis bpcusack FAB-lab
	Evaluating Support for the Current Classification of Eukaryotic Diversity [My Copy] PLoS Genetics, Vol. 2, No. 12. (1 December 2006), e220. by Laura W. Parfrey, Erika Barbero, Elyse Lasser, et al.Micah Dunthorn, Debashish Bhattacharya, David J. Patterson, Laura A. Katz posted to phylogenomics phylogeny eukaryota by stajich on 2006-12-28 03:13:04 as along with 4 people and 1 group rvosa srfairclough dandaman cmzmasek FAB-lab
	Accreditation and attribution in data sharing [My Copy] Nat Biotech, Vol. 27, No. 11. (01 November 2009), pp. 984-985. by Gudmundur A. Thorisson posted to no-tag by stajich on 2009-11-16 06:54:17 as along with 5 people and 1 group lilith allysonlister dullhunk gthorisson neils 8_01
	Fungi behaving badly. [My Copy] Nature reviews. Microbiology, Vol. 3, No. 11. (01 November 2005), pp. 832-833. by Arnab Pain posted to fungi cell_wall cell_surface by stajich on 2009-08-30 21:10:46 as along with 1 group Mycology
	Intron Presence-Absence Polymorphisms in Daphnia [My Copy] Mol Biol Evol, Vol. 25, No. 10. (1 October 2008), pp. 2129-2139. by Angela R. Omilian, Douglas G. Scofield, Michael Lynch posted to intron intron_evolution intron_gain intron_loss population_genetics by stajich on 2008-09-13 07:38:13 as along with 1 person and 1 group bpcusack Mycology
	Phylogenetic simulation of promoter evolution: estimation and modeling of binding site turnover events and assessment of their impact on alignment tools. [My Copy] Genome biology, Vol. 8, No. 10. (24 October 2007), R225. by Weichun Huang, Joseph R. Nevins, Uwe Ohler posted to binding_site promotor turnover by stajich on 2007-10-29 01:04:01 as along with 5 people and 2 groups lusk dpollard djkt Garamonfok maximilianh EisenLab cis-regulatory-evolution
	Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron exon structure [My Copy] Bioinformatics, Vol. 23, No. 12. (15 June 2007), pp. 1468-1475. by Avril Coghlan, Richard Durbin posted to bioinformatics gene_finding intron by stajich on 2007-06-14 04:39:24 as along with 8 people and 3 groups operon thegoose2 jmartin49 tharris druvus indigoviolet GustavoLacerda dmc C. elegans / WormBase EisenLab Durbin group
	Control of alternative RNA splicing and gene expression by eukaryotic riboswitches [My Copy] Nature (29 April 2007) by Ming T. Cheah, Andreas Wachter, Narasimhan Sudarsan, Ronald R. Breaker posted to fungi riboswitch by stajich on 2007-06-11 00:22:40 as along with 1 person austin
	A Biochemical Guide to Yeast Adhesins: Glycoproteins for Social and Antisocial Occasions [My Copy] Microbiol. Mol. Biol. Rev., Vol. 71, No. 2. (1 June 2007), pp. 282-294. by Anne M. Dranginis, Jason M. Rauceo, Juan E. Coronado, Peter N. Lipke posted to adhesion cell_surface fungi multicellular by stajich on 2007-06-06 18:43:28 as
	The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans [My Copy] Science, Vol. 307, No. 5713. (25 February 2005), pp. 1321-1324. by Brendan J. Loftus, Eula Fung, Paola Roncaglia, et al.Don Rowley, Paolo Amedeo, Dan Bruno, Jessica Vamathevan, Molly Miranda, Iain J. Anderson, James A. Fraser, Jonathan E. Allen, Ian E. Bosdet, Michael R. Brent, Readman Chiu, Tamara L. Doering, Maureen J. Donlin, Cletus A. D'Souza, Deborah S. Fox, Viktoriya Grinberg, Jianmin Fu, Marilyn Fukushima, Brian J. Haas, James C. Huang, Guilhem Janbon, Steven J. Jones, Hean L. Koo, Martin I. Krzywinski, June K. Kwon-Chung, Klaus B. Lengeler, Rama Maiti, Marco A. Marra, Robert E. Marra, Carrie A. Mathewson, Thomas G. Mitchell, Mihaela Pertea, Florenta R. Riggs, Steven L. Salzberg, Jacqueline E. Schein, Alla Shvartsbeyn, Heesun Shin, Martin Shumway, Charles A. Specht, Bernard B. Suh, Aaron Tenney, Terry R. Utterback, Brian L. Wickes, Jennifer R. Wortman, Natasja H. Wye, James W. Kronstad, Jennifer K. Lodge, Joseph Heitman, Ronald W. Davis, Claire M. Fraser, Richard W. Hyman posted to cryptococcus fungi genome genome_paper by stajich on 2007-05-22 06:17:32 as along with 6 people and 3 groups GustavoLacerda labedan Cortel jwortman dalloliogm alexl Web2 splicing yeast
	Assessing performance of orthology detection strategies applied to eukaryotic genomes. [My Copy] PLoS ONE, Vol. 2 (2007) by F. Chen, A. J. Mackey, J. K. Vermunt, D. S. Roos posted to bioinformatics orthology software by stajich on 2007-04-19 22:03:28 as along with 14 people and 3 groups richardbickerton treangen dquest cgaugain druvus icases operon rvosa indigoviolet cjeans winterschlaefer bpcusack cerca natstreet EisenLab FAB-lab TNT
	Hypovirus Papain-Like Protease p29 Suppresses RNA Silencing in the Natural Fungal Host and in a Heterologous Plant System [My Copy] Eukaryotic Cell, Vol. 5, No. 6. (1 June 2006), pp. 896-904. by Gerrit C. Segers, Rene van Wezel, Xuemei Zhang, Yiguo Hong, Donald L. Nuss posted to rnai rna_silencing fungi by stajich on 2007-01-31 01:46:24 as
	Targeted Gene Silencing in the Model Mushroom Coprinopsis cinerea (Coprinus cinereus) by Expression of Homologous Hairpin RNAs [My Copy] Eukaryotic Cell, Vol. 5, No. 4. (1 April 2006), pp. 732-744. by Martin A. Walti, Cristina Villalba, Reto M. Buser, Anke Grunler, Markus Aebi, Markus Kunzler posted to rnai rna_silencing fungi coprinus by stajich on 2007-01-31 01:40:37 as along with 1 person ecattell
	On the Varied Pattern of Evolution of 2 Fungal Genomes: A Critique of Hughes and Friedman [My Copy] Molecular Biology and Evolution, Vol. 23, No. 12. (15 December 2006), pp. 2279-2282. by Yang, Ziheng posted to positive_selection molecular_evolution by stajich on 2007-01-18 01:09:37 as
	Evolution of sensory complexity recorded in a myxobacterial genome [My Copy] PNAS, Vol. 103, No. 41. (10 October 2006), pp. 15200-15205. by B. S. Goldman, W. C. Nierman, D. Kaiser, et al.S. C. Slater, A. S. Durkin, J. A. Eisen, C. M. Ronning, W. B. Barbazuk, M. Blanchard, C. Field, C. Halling, G. Hinkle, O. Iartchuk, H. S. Kim, C. Mackenzie, R. Madupu, N. Miller, A. Shvartsbeyn, S. A. Sullivan, M. Vaudin, R. Wiegand, H. B. Kaplan posted to cellular_signaling comparative_genomics development genome multicellular myxobacterial by stajich on 2006-12-12 14:29:31 as along with 3 people bjorns treangen blobbybirdman
	A twelve-step program for evolving multicellularity and a division of labor. [My Copy] Bioessays, Vol. 27, No. 3. (March 2005), pp. 299-310. by D. L. Kirk posted to multicellular volvox by stajich on 2006-12-08 17:55:42 as along with 4 people and 1 group stevanspringer matzke srfairclough cmzmasek FAB-lab
	The Evolutionary Origin of an Altruistic Gene [My Copy] Mol Biol Evol, Vol. 23, No. 8. (1 August 2006), pp. 1460-1464. by Aurora M. Nedelcu, Richard E. Michod posted to multicellular volvox by stajich on 2006-12-08 17:55:14 as
	Multicellularity and the functional interdependence of motility and molecular transport [My Copy] PNAS, Vol. 103, No. 5. (31 January 2006), pp. 1353-1358. by Cristian A. Solari, Sujoy Ganguly, John O. Kessler, Richard E. Michod, Raymond E. Goldstein posted to multicellular volvox by stajich on 2006-12-08 17:54:30 as
	RNA Silencing Gene Truncation in the Filamentous Fungus Aspergillus nidulans [My Copy] Eukaryotic Cell, Vol. 7, No. 2. (1 February 2008), pp. 339-349. by T. M. Hammond, J. W. Bok, M. D. Andrewski, Y. Reyes-Dominguez, C. Scazzocchio, N. P. Keller posted to aspergillus rnai rna_silencing by stajich on 2008-02-07 04:58:52 as along with 1 group Mycology
	A novel screening method for cell wall mutants in Aspergillus niger identifies UDP-galactopyranose mutase (UgmA) as an important protein in fungal cell wall biosynthesis [My Copy] Genetics (3 February 2008), genetics.107.073148. by Robbert A. Damveld, Angelique Franken, Mark Arentshorst, et al.Peter J. Punt, Frans M. Klis, Cees A. van den Hondel, Arthur F. Ram posted to aspergillus cell_wall by stajich on 2008-02-04 08:15:57 as along with 1 group Mycology
	CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction [My Copy] Genome Biology, Vol. 8, No. 12. (20 December 2007), R269. by Samuel Gross, Chuong Do, Marina Sirota, Serafim Batzoglou posted to comparative_genomics gene_prediction by stajich on 2007-12-23 21:48:05 as along with 5 people and 2 groups seb1 talponer dakelley GustavoLacerda renatomilani EisenLab Mycology
	Heterotrimeric G Protein Signaling in Filamentous Fungi. [My Copy] Annu Rev Microbiol (16 August 2006) by Liande Li, Sara J J. Wright, Svetlana Krystofova, Gyungsoon Park, Katherine Borkovich posted to filamentous g-proteins signaling by stajich on 2007-12-07 18:43:58 as along with 2 people angieju cellison
	Rampant Adaptive Evolution in Regions of Proteins with Unknown Function in Drosophila simulans. [My Copy] PLoS ONE, Vol. 2, No. 10. (2007) by A. K. Holloway, D. J. Begun posted to adaptive drosophila evolution genomics population_genomics by stajich on 2007-11-06 17:46:17 as along with 1 person and 1 group pradiptaray EisenLab
	Reconcilation with non-binary species trees. [My Copy] Comput Syst Bioinformatics Conf, Vol. 6 (2007), pp. 441-452. by B. Vernot, M. Stolzer, A. Goldman, D. Durand posted to reconciliation species_tree by stajich on 2007-10-29 01:18:00 as
	Mutation of msh-2 in Neurospora crassa does not reduce the incidence of recombinants with multiple patches of donor chromosome sequence [My Copy] Fungal Genetics and Biology, Vol. 44, No. 7. (July 2007), pp. 575-584. by Lin Y. Koh, David E. Catcheside posted to neurospora recombination by stajich on 2007-10-29 01:15:58 as
	Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution [My Copy] Genome Biology, Vol. 8, No. 7. (16 July 2007), R141. by Matthew Hahn posted to duplication gene_tree phylogenetics reconciliation by stajich on 2007-10-03 22:40:49 as along with 1 person and 1 group bpcusack Mycology
	Evidence of mycoparasitism and hypermycoparasitism in Early Cretaceous amber [My Copy] Mycological Research, Vol. 111, No. 4. (April 2007), pp. 503-506. by Poinar, Ron Buckley posted to fossil fungi by stajich on 2007-06-11 21:20:00 as
	Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments [My Copy] Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383. by Giddy Landan, Dan Graur posted to alignment methods multiple_sequence_alignment by stajich on 2007-05-29 16:23:12 as along with 9 people and 1 group treangen druvus aprasad rvosa BioNica cjeans zwang lilou mailund FAB-lab
	Patterns of Intron Loss and Gain in Plants: Intron Loss-Dominated Evolution and Genome-Wide Comparison of O. sativa and A. thaliana [My Copy] Mol Biol Evol, Vol. 24, No. 1. (1 January 2007), pp. 171-181. by Scott W. Roy, David Penny posted to evolution intron plants by stajich on 2007-05-22 06:28:49 as along with 1 person Baschl
	Incorporating indel information into phylogeny estimation for rapidly emerging pathogens [My Copy] BMC Evolutionary Biology, Vol. 7, No. 1. (14 March 2007), 40. by Benjamin Redelings, Marc Suchard posted to alignment evolution gene indels phylogenetics by stajich on 2007-04-19 22:09:16 as along with 5 people and 1 group timflutre druvus operon aprasad dpollard EisenLab
	Consistent Patterns of Rate Asymmetry and Gene Loss Indicate Widespread Neofunctionalization of Yeast Genes After Whole-Genome Duplication [My Copy] Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1341-1350. by Kevin P. Byrne, Kenneth H. Wolfe posted to gene_duplication regulatory_evolution yeast by stajich on 2007-04-19 22:08:36 as along with 3 people and 1 group gjuggler dpollard echinotrix EisenLab
	Background selection in single genes may explain patterns of codon bias. [My Copy] Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1381-1393. by Laurence Loewe, Brian Charlesworth posted to codon_bias evolution hill_roberts selection by stajich on 2007-04-19 22:07:53 as along with 4 people and 1 group codonusage bpcusack operon dpollard EisenLab
	Comparative analysis indicates regulatory neofunctionalization of yeast duplicates [My Copy] Genome Biology, Vol. 8, No. 4. (05 April 2007), R50. by Itay Tirosh, Naama Barkai posted to gene_duplication regulatory_evolution yeast by stajich on 2007-04-19 22:07:01 as along with 5 people and 2 groups azazello ptrobajo adepace cisevol ajpowell EisenLab cis-regulatory-evolution
	Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering [My Copy] PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e65. by Sebastian Will, Kristin Reiche, Ivo L. Hofacker, Peter F. Stadler, Rolf Backofen posted to noncoding_rna software by stajich on 2007-04-19 22:04:59 as along with 8 people and 2 groups admash thegoose GustavoLacerda indigoviolet andersbj mtagaya zwang jayster4 EisenLab microRNA
	Determination of keratin degradation by fungi using keratin azure [My Copy] Med Mycology, Vol. 42, No. 3. (2004), pp. 239-246. by J. A. Scott, W. A. Untereiner posted to fungi keratin keritinophilic by stajich on 2007-03-20 18:20:28 as
	Defining virulence genes in the dimorphic fungi. [My Copy] Annu Rev Microbiol, Vol. 60 (2006), pp. 281-303. by C. A. Rappleye, W. E. Goldman posted to dimorphism fungi virulence by stajich on 2007-03-11 18:37:30 as
	A Screen for Recessive Speciation Genes Expressed in the Gametes of F1 Hybrid Yeast [My Copy] PLoS Genetics, Vol. 3, No. 2. (1 February 2007), e21. by Duncan Greig posted to hybrid_incompatibility speciation yeast by stajich on 2007-02-24 00:18:10 as
	Genomics of microRNA [My Copy] Trends in Genetics, Vol. 22, No. 3. (27 March 2006), pp. 165-173. by V. Kim, J. Nam posted to mirna by stajich on 2007-02-11 23:39:12 as along with 12 people and 6 groups dayjm heliopais GustavoLacerda marcius eckart_bindewald tardigrade andersbj dchughes mtagaya Garamonfok ale jo_davies Bioinformatics microRNA G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
	From Gene to Organismal Phylogeny: Reconciled Trees and the Gene Tree/Species Tree Problem [My Copy] Molecular Phylogenetics and Evolution, Vol. 7, No. 2. (April 1997), pp. 231-240. by Roderic D. Page, Michael A. Charleston posted to tree_reconcilation species_tree gene_tree by stajich on 2007-02-05 21:58:38 as along with 1 person johanviklund
	Identification of a large noncoding RNA in extremophilic eubacteria. [My Copy] Proc Natl Acad Sci U S A (12 December 2006) by Elena Puerta-Fernandez, Jeffrey E E. Barrick, Adam Roth, Ronald R R. Breaker posted to noncoding_rna bacteria by stajich on 2007-02-02 07:23:03 as along with 1 person eckart_bindewald
	The Aspergillus nidulans rcoA Gene Is Required for veA-Dependent Sexual Development [My Copy] Genetics, Vol. 174, No. 3. (1 November 2006), pp. 1685-1688. by Richard B. Todd, Michael J. Hynes, Alex Andrianopoulos posted to sexual_development fungi aspergillus by stajich on 2007-01-31 02:12:25 as
	Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. [My Copy] Science, Vol. 297, No. 5588. (13 September 2002), pp. 1833-1837. by T. A. Volpe, C. Kidner, I. M. Hall, G. Teng, S. I. Grewal, R. A. Martienssen posted to s_pombe rnai rna_silencing fungi by stajich on 2007-01-31 01:44:32 as along with 3 people micromassive briann elzodw
	RNA Silencing in Aspergillus nidulans Is Independent of RNA-Dependent RNA Polymerases [My Copy] Genetics, Vol. 169, No. 2. (1 February 2005), pp. 607-617. by T. M. Hammond, N. P. Keller posted to rnai rna_silencing fungi aspergillus by stajich on 2007-01-31 01:41:19 as
	Ancient Tripartite Coevolution in the Attine Ant-Microbe Symbiosis [My Copy] Science, Vol. 299, No. 5605. (17 January 2003), pp. 386-388. by Cameron R. Currie, Bess Wong, Alison E. Stuart, et al.Ted R. Schultz, Stephen A. Rehner, Ulrich G. Mueller, Gi-Ho Sung, Joseph W. Spatafora, Neil A. Straus posted to symbiosis mutalism fungi coevolution ant by stajich on 2007-01-26 18:02:46 as along with 2 people and 1 group operon cmm FAB-lab
	Coevolved Crypts and Exocrine Glands Support Mutualistic Bacteria in Fungus-Growing Ants [My Copy] Science, Vol. 311, No. 5757. (6 January 2006), pp. 81-83. by Cameron R. Currie, Michael Poulsen, John Mendenhall, Jacobus J. Boomsma, Johan Billen posted to symbiosis mutalism fungi coevolution ant by stajich on 2007-01-26 18:02:18 as along with 3 people and 1 group jmeppley madhadron cmm FAB-lab
	In the Ant's Garden, Fungal Parasites Are Closely Matched to Their Fungal Hosts [My Copy] PLoS Biology, Vol. 4, No. 8. (1 August 2006), e259. by Richard Robinson posted to symbiosis mutalism fungi coevolution ant by stajich on 2007-01-26 18:01:27 as

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fungi	218
evolution	112
methods	68
multicellular	66
bioinformatics	61
genome	61
aspergillus	58
yeast	57
saccharomyces	44
neurospora	41
intron	40
cell_wall	39
phylogenetics	39
development	35
mirna	35
molecular_evolution	31
noncoding_rna	30
drosophila	29
smallrna	29
comparative_genomics	28
cryptococcus	28
phylogeny	28
basidiomycota	27
gene_expression	26
genome_evolution	25
pathogen	24
population_genomics	24
rnai	23
nextgensequencing	22
population_genetics	22
sequencing	21
sexual_development	21
phylogenomics	20
speciation	20
annotation	18
cell_surface	18
splicing	18
alternative_splicing	17
coccipaper	17
filamentous	17
rna_silencing	17
solexa	17
genome_paper	16
metazoa	16
positive_selection	16
bacteria	15
computational_biology	14
duplication	14
gene_family	13
intron_evolution	13
plant	13
alignment	12
assembly	12
gene_duplication	12
genome_annotation	12
human	12
intron_loss	12
meiosis	12
plantpathogen	12
coccidioides	11
gene_tree	11
genomics	11
pombe	11
shortread	11
smallrna_paper	11
synteny	11
transcription	11
virus	11
antifungal	10
coprinus	10
eukaryota	10
gene	10
horizontal_gene_transfer	10
mating_genes	10
mushroom	10
regulation	10
rna	10
selection	10
chytrid	9
gene_prediction	9
intron_gain	9
mating_type	9
selection_test	9
zygomycota	9
ascomycota	8
beta-glucan	8
caenorhabditis	8
candida	8
database	8
dictyostelium	8
gene_finding	8
recombination	8
repeats	8
silencing	8
species_tree	8
batrachochytrium	7
binding_site	7
cellular_signaling	7
cellulose_synthase	7
evodevo	7
halophile	7
halophilic	7
hypersaline	7
light_response	7
marine	7
metagenomics	7
microarray	7
mycovirus	7
noncoding	7
oomycete	7
plants	7
signaling	7
software	7
symbiosis	7
virulence	7
virulence_factor	7
adhesion	6
ant	6
chipseq	6
coevolution	6
est	6
gene_regulation	6
hydrophobin	6
mrna	6
mutation_rate	6
mycorrhizal	6
polymorphism	6
sex_chromosome	6
snp	6
spore	6
toxin	6
transcription_factor	6
ustilago	6
volvox	6
codon_bias	5
codon_model	5
ecology	5
environmental_microbiology	5
meiotic_silencing	5
metazoan	5
microsporidia	5
mutalism	5
p450	5
paml	5
penicillium	5
posttranscriptional	5
prediction	5
protein	5
protein_evolution	5
resequencing	5
review	5
rhizopus	5
rip	5
rna_gene	5
rnaseq	5
secondary_metabolite	5
snorna	5
statistics	5
stress_response	5
transposable_elements	5
transposon	5
adaptation	4
animal	4
asexual_development	4
blastomyces	4
chitin	4
cis-regulatory	4
comparative	4
cryptic_species	4
dimorphism	4
dna	4
dsrna	4
enzyme	4
flagella	4
gene_silencing	4
glucan	4
histoplasma	4
hyphal_growth	4
infection	4
infectious_disease	4
mapping	4
microbial	4
moniliophthora	4
morphology	4
msud	4
nematode	4
orthology	4
phanerochaete_chrysosporium	4
pheremone	4
phylogenetic_marker_selection	4
podospora	4
proteomics	4
psychrophile	4
schizophyllum	4
secreted	4
sequence_analysis	4
simulation	4
sirna	4
smut	4
sugar	4
systematics	4
transcriptional_regulation	4
tree	4
tree_reconcilation	4
whole_genome	4
454	3
adaptive	3
amanita	3
anopheles	3
antisense_transcription	3
apicomplexa	3
arabidopsis	3
argonaute	3
ascospore	3
biogenesis	3
biosynthesis	3
browser	3
cellulase	3
centromere	3
chytridgenomepaper	3
circadian	3
combiners	3
conidial	3
cooperation	3
copy_number_variation	3
crystalstructure	3
defense	3
dicer	3
disease	3
diversity	3
domestication	3
drug_resistance	3
evolutionary_theory	3
expansion	3
extremophile	3
frog	3
fungus	3
fusarium	3
genotype	3
hyphal	3
illumina	3
magnaporthe	3
mammal	3
microbotryum	3
mosquito	3
motif	3
mucor	3
multiple_sequence_alignment	3
network	3
neurospora_tetrasperma	3
nmd	3
nuclear_export	3
opisthokont	3
paralogs	3
photoreceptor	3
phytophthora	3
plant-microbe	3
promotor	3
protein_localization	3
protist	3
rdna	3
regulatory_evolution	3
resistance	3
riboswitch	3
rnaworld	3
septin	3
thermophile	3
transporter	3
trichoderma	3
trna	3
variation	3
12flies	2
algae	2
algorithm	2
alpha_amylase	2
analysis	2
antisense	2
apicomplexia	2
apoptosis	2
aquatic	2
array	2
ascosphaera	2
automation	2
bioperl	2
bioremediation	2
blogging	2
cacao	2
cellulose	2
cell_wall_genes	2
cell_wall_integrity	2
centrosome	2
character_evolution	2
chitin_synthase	2
chlamydomonas	2
coalescent	2
coelomata	2
cold	2
comparison	2
complexity	2
cryphonectria	2
cytochrome	2
divergence_time	2
dothideomycete	2
ecdysozoa	2
ectomycorrhizal	2
endophyte	2
expression	2
fks1	2
floculation	2
folding	2
fractal	2
functional_prediction	2
gene_network	2
genome_duplication	2
germination	2
glucanase	2
g-proteins	2
growth	2
heterokaryon	2
het_loci	2
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wcc	1
wga	1
wiki	1
word_frequency	1
worm	1
wtf	1
xml	1
yellowstone	1
zoospore	1

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