stajich's comparative_genomics [28 articles] Export

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	Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. [My Copy] Genome research, Vol. 19, No. 10. (28 October 2009), pp. 1722-1731. by Thomas J. Sharpton, Jason E. Stajich, Steven D. Rounsley, et al.Malcolm J. Gardner, Jennifer R. Wortman, Vinita S. Jordar, Rama Maiti, Chinnappa D. Kodira, Daniel E. Neafsey, Qiandong Zeng, Chiung-Yu Y. Hung, Cody McMahan, Anna Muszewska, Marcin Grynberg, M. Alejandra Mandel, Ellen M. Kellner, Bridget M. Barker, John N. Galgiani, Marc J. Orbach, Theo N. Kirkland, Garry T. Cole, Matthew R. Henn, Bruce W. Birren, John W. Taylor posted to fungi comparative_genomics coccidioides by stajich on 2009-09-13 19:14:50 as along with 5 people and 1 group bcondon GustavoLacerda druvus ramonvidal kiekyon Mycology
	Comparative genomics of protoploid Saccharomycetaceae [My Copy] Genome Research, Vol. 19, No. 10. (12 October 2009), pp. 1696-1709. by Jean-Luc Souciet, Bernard Dujon, Claude Gaillardin, et al.Mark Johnston, Philippe V. Baret, Paul Cliften, David J. Sherman, Jean Weissenbach, Eric Westhof, Patrick Wincker, Claire Jubin, Julie Poulain, ValÃ©rie Barbe, BÃ©atrice SÃ©gurens, FranÃ§ois Artiguenave, VÃ©ronique Anthouard, Benoit Vacherie, Marie-Eve Val, Robert S. Fulton, Patrick Minx, Richard Wilson, Pascal Durrens, GÃ©raldine Jean, Christian Marck, Tiphaine Martin, Macha Nikolski, Thomas Rolland, Marie-Line Seret, Serge CasarÃ©gola, Laurence Despons, CÃ©cile Fairhead, Gilles Fischer, Ingrid Lafontaine, VÃ©ronique Leh, Marc Lemaire, Jacky de Montigny, CÃ©cile NeuvÃ©glise, AgnÃ¨s Thierry, Isabelle Blanc-Lenfle, Claudine Bleykasten, Julie Diffels, Emilie Fritsch, Lionel Frangeul, Adrien GoÃ«ffon, Nicolas Jauniaux, Rym Kachouri-Lafond, CÃ©lia Payen, Serge Potier, Lenka Pribylova, Christophe Ozanne, Guy-Franck Richard, Christine Sacerdot, Marie-Laure Straub, Emmanuel Talla posted to saccharomyces comparative_genomics by stajich on 2009-09-13 19:14:22 as along with 5 people and 3 groups biomcgary tapioka kiekyon druvus ppgardne ronbun_2009au Journal picks Mycology
	Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans [My Copy] Genome Research (10 September 2009) by Andrew P. Jackson, John A. Gamble, Tim Yeomans, et al.Gary P. Moran, David Saunders, David Harris, Martin Aslett, Jamie F. Barrell, Geraldine Butler, Francesco Citiulo, David C. Coleman, Piet W. J. de Groot, Tim J. Goodwin, Michael A. Quail, Jacqueline McQuillan, Carol A. Munro, Arnab Pain, Russell T. Poulter, Marie-AdÃ¨le Rajandream, Hubert Renauld, Martin J. Spiering, Adrian Tivey, Neil A. R. Gow, Barclay Barrell, Derek J. Sullivan, Matthew Berriman posted to fungi comparative_genomics candida by stajich on 2009-09-13 19:05:16 as along with 2 people and 1 group kshameer venancio Mycology
	EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates [My Copy] Genome Research, Vol. 19, No. 2. (24 February 2009), pp. 327-335. by Albert J. Vilella, Jessica Severin, Abel Ureta-Vidal, Li Heng, Richard Durbin, Ewan Birney posted to comparative_genomics duplication ensembl ensemblcompara evolution gene_tree phylogenetics tree vertebrate by stajich on 2008-12-01 18:58:31 as along with 7 people and 2 groups Keywan druvus operon alpae isimpson birney gjuggler Jarman Lab Mycology
	PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood. [My Copy] Nucleic acids research (2 October 2008) by Tim Hulsen, Peter M A M. Groenen, Jacob de Vlieg, Wynand Alkema posted to bioinformatics comparative_genomics methods phylogenetics by stajich on 2008-10-10 20:43:20 as along with 2 people and 1 group druvus nuin Mycology
	Comparative Genome Analysis of Filamentous Fungi Reveals Gene Family Expansions Associated with Fungal Pathogenesis [My Copy] PLoS ONE, Vol. 3, No. 6. (4 June 2008), e2300. by Darren M. Soanes, Intikhab Alam, Mike Cornell, et al.Han M. Wong, Cornelia Hedeler, Norman W. Paton, Magnus Rattray, Simon J. Hubbard, Stephen G. Oliver, Nicholas J. Talbot posted to analysis comparative_genomics fungi genome phylogenomics by stajich on 2008-08-16 00:49:43 as along with 3 people and 1 group nlapalu bcondon GustavoLacerda Mycology
	Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities [My Copy] BMC Genomics, Vol. 9 (29 April 2008), 200. by Bryony A. P. Williams, Renny C. H. Lee, James J. Becnel, Louis M. Weiss, Naomi M. Fast, Patrick J. Keeling posted to comparative_genomics genome microsporidia by stajich on 2008-07-07 03:36:49 as along with 1 group Mycology
	What can comparative genomics tell us about species concepts in the genus Aspergillus? [My Copy] Studies in mycology, Vol. 59 (2007), pp. 11-17. by A. Rokas, G. Payne, N. D. Fedorova, et al.S. E. Baker, M. Machida, J. Yu, D. R. Georgianna, R. A. Dean, D. Bhatnagar, T. E. Cleveland, J. R. Wortman, R. Maiti, V. Joardar, P. Amedeo, D. W. Denning, W. C. Nierman posted to aspergillus comparative_genomics fungi by stajich on 2008-05-25 20:56:19 as along with 1 group Mycology
	Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans [My Copy] Genome Biology, Vol. 9 (22 February 2008), R41. by Guanggan Hu, Iris Liu, Anita Sham, Jason E. Stajich, Fred S. Dietrich, James W. Kronstad posted to cgh comparative_genomics cryptococcus fungi by stajich on 2008-05-19 06:48:44 as along with 1 group Mycology
	The genome of the brown alga Ectocarpus siliculosus contains a series of viral DNA pieces, suggesting an ancient association with large dsDNA viruses [My Copy] BMC Evolutionary Biology, Vol. 8 (12 April 2008), 110. by Nicolas Delaroque, Wilhelm Boland posted to algae comparative comparative_genomics genome virus by stajich on 2008-04-15 06:20:29 as along with 1 group Mycology
	Levers and fulcrums: progress in cis-regulatory motif models [My Copy] Nature Methods, Vol. 5, No. 4., pp. 297-298. by Ewan Birney posted to cis-regulatory comparative_genomics methods motif prediction by stajich on 2008-04-07 16:11:40 as along with 3 people and 2 groups emptyhb pradiptaray isimpson EisenLab Mycology
	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 219-232. by A. Stark, M. F. Lin, P. Kheradpour, et al.J. S. Pedersen, L. Parts, J. W. Carlson, M. A. Crosby, M. D. Rasmussen, S. Roy, A. N. Deoras, J. G. Ruby, J. Brennecke, , , E. Hodges, A. S. Hinrichs, A. Caspi, B. Paten, S. W. Park, M. V. Han, M. L. Maeder, B. J. Polansky, B. E. Robson, S. Aerts, J. van Helden, B. Hassan, D. G. Gilbert, D. A. Eastman, M. Rice, M. Weir, M. W. Hahn, Y. Park, C. N. Dewey, L. Pachter, W. J. Kent, D. Haussler, E. C. Lai, D. P. Bartel, G. J. Hannon, T. C. Kaufman, M. B. Eisen, A. G. Clark, D. Smith, S. E. Celniker, W. M. Gelbart, M. Kellis posted to comparative_genomics drosophila genome genome_paper sequencing by stajich on 2008-04-05 19:56:58 as along with 21 people and 3 groups heliopais anphony kieran101 Neeperando pradiptaray rouault druvus operon tmmurali djkt timflutre lp2 cabbagezs nklee hpaces roys caseybrown gjuggler shuzhens PetrovLab cisevol microRNA Mycology Drosophila-Genetics-Genomics-2008
	A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands [My Copy] Genes & Development, Vol. 22, No. 1. (1 January 2008), pp. 8-13. by Alexander Stark, Natascha Bushati, Calvin H. Jan, et al.Pouya Kheradpour, Emily Hodges, Julius Brennecke, David P. Bartel, Stephen M. Cohen, Manolis Kellis posted to comparative_genomics drosophila mirna noncoding_rna by stajich on 2008-04-05 19:55:44 as along with 6 people and 1 group daforerog valeriehilgers sebastien_vigneau heliopais Alexander_Kanitz maralena Mycology
	Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes [My Copy] Genome Res. (7 November 2007), gr.6593807. by Alexander Stark, Pouya Kheradpour, Leopold Parts, et al.Julius Brennecke, Emily Hodges, Gregory J. Hannon, Manolis Kellis posted to comparative_genomics drosophila fly mirna prediction by stajich on 2008-03-11 00:31:16 as along with 6 people and 2 groups valeriehilgers pengchy lp2 cabbagezs heliopais maralena microRNA Mycology
	Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments [My Copy] Genome Biology, Vol. 9 (11 January 2008), R7. by Brian J. Haas, Steven L. Salzberg, Wei Zhu, et al.Mihaela Pertea, Jonathan E. Allen, Joshua Orvis, Owen R. White, Robin C. Buell, Jennifer R. Wortman posted to combiners comparative_genomics gene_prediction genome_annotation by stajich on 2008-01-21 02:09:44 as along with 3 people and 1 group druvus GustavoLacerda mclarenv Mycology
	CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction [My Copy] Genome Biology, Vol. 8, No. 12. (20 December 2007), R269. by Samuel Gross, Chuong Do, Marina Sirota, Serafim Batzoglou posted to comparative_genomics gene_prediction by stajich on 2007-12-23 21:48:05 as along with 5 people and 2 groups seb1 talponer dakelley GustavoLacerda renatomilani EisenLab Mycology
	The fungus Ustilago maydis and humans share disease-related proteins that are not found in Saccharomyces cerevisiae [My Copy] BMC Genomics, Vol. 8, No. 1. (20 December 2007), 473. by Martin Munsterkotter, Gero Steinberg posted to comparative_genomics ustilago by stajich on 2007-12-23 21:45:59 as along with 3 people and 1 group nlapalu GustavoLacerda seitentaisei Mycology
	Evolution of genes and genomes on the Drosophila phylogeny [My Copy] Nature, Vol. 450, No. 7167. (08 November 2007), pp. 203-218. posted to 12flies comparative_genomics drosophila genome_paper by stajich on 2007-12-16 01:04:03 as along with 37 people and 5 groups aaltenburger biomcgary nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 rpetrenko gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol hdopazo Bioinformatics EisenLab Mycology BergmanLab Drosophila-Genetics-Genomics-2008
	Comparative Genome and Proteome Analysis of Anopheles gambiae and Drosophila melanogaster [My Copy] Science, Vol. 298, No. 5591. (4 October 2002), pp. 149-159. by Evgeny M. Zdobnov, Christian von Mering, Ivica Letunic, et al.David Torrents, Mikita Suyama, Richard R. Copley, George K. Christophides, Dana Thomasova, Robert A. Holt, G. Mani Subramanian, Hans-Michael Mueller, George Dimopoulos, John H. Law, Michael A. Wells, Ewan Birney, Rosane Charlab, Aaron L. Halpern, Elena Kokoza, Cheryl L. Kraft, Zhongwu Lai, Suzanna Lewis, Christos Louis, Carolina Barillas-Mury, Deborah Nusskern, Gerald M. Rubin, Steven L. Salzberg, Granger G. Sutton, Pantelis Topalis, Ron Wides, Patrick Wincker, Mark Yandell, Frank H. Collins, Jose Ribeiro, William M. Gelbart, Fotis C. Kafatos, Peer Bork posted to anopheles comparative_genomics by stajich on 2007-12-16 01:03:21 as along with 2 people and 1 group GustavoLacerda sdinka Mycology
	Initial sequencing and comparative analysis of the mouse genome. [My Copy] Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562. by Mouse Genome Sequencing Consortium, Robert H. Waterston, Kerstin Lindblad-Toh, et al.Ewan Birney, Jane Rogers, Josep F. Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E. Antonarakis, John Attwood, Robert Baertsch, Jonathon Bailey, Karen Barlow, Stephan Beck, Eric Berry, Bruce Birren, Toby Bloom, Peer Bork, Marc Botcherby, Nicolas Bray, Michael R. Brent, Daniel G. Brown, Stephen D. Brown, Carol Bult, John Burton, Jonathan Butler, Robert D. Campbell, Piero Carninci, Simon Cawley, Francesca Chiaromonte, Asif T. Chinwalla, Deanna M. Church, Michele Clamp, Christopher Clee, Francis S. Collins, Lisa L. Cook, Richard R. Copley, Alan Coulson, Olivier Couronne, James Cuff, Val Curwen, Tim Cutts, Mark Daly, Robert David, Joy Davies, Kimberly D. Delehaunty, Justin Deri, Emmanouil T. Dermitzakis, Colin Dewey, Nicholas J. Dickens, Mark Diekhans, Sheila Dodge, Inna Dubchak, Diane M. Dunn, Sean R. Eddy, Laura Elnitski, Richard D. Emes, Pallavi Eswara, Eduardo Eyras, Adam Felsenfeld, Ginger A. Fewell, Paul Flicek, Karen Foley, Wayne N. Frankel, Lucinda A. Fulton, Robert S. Fulton, Terrence S. Furey, Diane Gage, Richard A. Gibbs, Gustavo Glusman, Sante Gnerre, Nick Goldman, Leo Goodstadt, Darren Grafham, Tina A. Graves, Eric D. Green, Simon Gregory, Roderic Guigó, Mark Guyer, Ross C. Hardison, David Haussler, Yoshihide Hayashizaki, LaDeana W. Hillier, Angela Hinrichs, Wratko Hlavina, Timothy Holzer, Fan Hsu, Axin Hua, Tim Hubbard, Adrienne Hunt, Ian Jackson, David B. Jaffe, L. Steven Johnson, Matthew Jones, Thomas A. Jones, Ann Joy, Michael Kamal, Elinor K. Karlsson, Donna Karolchik, Arkadiusz Kasprzyk, Jun Kawai, Evan Keibler, Cristyn Kells, W. James Kent, Andrew Kirby, Diana L. Kolbe, Ian Korf, Raju S. Kucherlapati, Edward J. Kulbokas, David Kulp, Tom Landers, J. P. Leger, Steven Leonard, Ivica Letunic, Rosie Levine, Jia Li, Ming Li, Christine Lloyd, Susan Lucas, Bin Ma, Donna R. Maglott, Elaine R. Mardis, Lucy Matthews, Evan Mauceli, John H. Mayer, Megan McCarthy, W. Richard McCombie, Stuart McLaren, Kirsten McLay, John D. McPherson, Jim Meldrim, Beverley Meredith, Jill P. Mesirov, Webb Miller, Tracie L. Miner, Emmanuel Mongin, Kate T. Montgomery, Michael Morgan, Richard Mott, James C. Mullikin, Donna M. Muzny, William E. Nash, Joanne O. Nelson, Michael N. Nhan, Robert Nicol, Zemin Ning, Chad Nusbaum, Michael J. O'Connor, Yasushi Okazaki, Karen Oliver, Emma Overton-Larty, Lior Pachter, Genís Parra, Kymberlie H. Pepin, Jane Peterson, Pavel Pevzner, Robert Plumb, Craig S. Pohl, Alex Poliakov, Tracy C. Ponce, Chris P. Ponting, Simon Potter, Michael Quail, Alexandre Reymond, Bruce A. Roe, Krishna M. Roskin, Edward M. Rubin, Alistair G. Rust, Ralph Santos, Victor Sapojnikov, Brian Schultz, Jörg Schultz, Matthias S. Schwartz, Scott Schwartz, Carol Scott, Steven Seaman, Steve Searle, Ted Sharpe, Andrew Sheridan, Ratna Shownkeen, Sarah Sims, Jonathan B. Singer, Guy Slater, Arian Smit, Douglas R. Smith, Brian Spencer, Arne Stabenau, Nicole Stange-Thomann, Charles Sugnet, Mikita Suyama, Glenn Tesler, Johanna Thompson, David Torrents, Evanne Trevaskis, John Tromp, Catherine Ucla, Abel Ureta-Vidal, Jade P. Vinson, Andrew C. Von Niederhausern, Claire M. Wade, Melanie Wall, Ryan J. Weber, Robert B. Weiss, Michael C. Wendl, Anthony P. West, Kris Wetterstrand, Raymond Wheeler, Simon Whelan, Jamey Wierzbowski, David Willey, Sophie Williams, Richard K. Wilson, Eitan Winter, Kim C. Worley, Dudley Wyman, Shan Yang, Shiaw-Pyng P. Yang, Evgeny M. Zdobnov, Michael C. Zody, Eric S. Lander posted to comparative_genomics genome_paper mouse by stajich on 2007-12-16 01:02:37 as along with 24 people and 2 groups rshe seb1 ajbattle jmanning2k timhubbard taroleo fisherp dkulp sdinka Cortel jwortman Dax42 aprasad ccots indigoviolet adepace treangen joshuashen djkt olympos hausen yoanjacquemin elfar kevinemamy EisenLab Mycology
	Genome sequence of the Brown Norway rat yields insights into mammalian evolution. [My Copy] Nature, Vol. 428, No. 6982. (1 April 2004), pp. 493-521. by R. A. Gibbs, G. M. Weinstock, M. L. Metzker, et al.D. M. Muzny, E. J. Sodergren, S. Scherer, G. Scott, D. Steffen, K. C. Worley, P. E. Burch, G. Okwuonu, S. Hines, L. Lewis, C. DeRamo, O. Delgado, S. Dugan-Rocha, G. Miner, M. Morgan, A. Hawes, R. Gill, Celera, R. A. Holt, M. D. Adams, P. G. Amanatides, H. Baden-Tillson, M. Barnstead, S. Chin, C. A. Evans, S. Ferriera, C. Fosler, A. Glodek, Z. Gu, D. Jennings, C. L. Kraft, T. Nguyen, C. M. Pfannkoch, C. Sitter, G. G. Sutton, J. C. Venter, T. Woodage, D. Smith, H. M. Lee, E. Gustafson, P. Cahill, A. Kana, L. Doucette-Stamm, K. Weinstock, K. Fechtel, R. B. Weiss, D. M. Dunn, E. D. Green, R. W. Blakesley, G. G. Bouffard, P. J. De Jong, K. Osoegawa, B. Zhu, M. Marra, J. Schein, I. Bosdet, C. Fjell, S. Jones, M. Krzywinski, C. Mathewson, A. Siddiqui, N. Wye, J. McPherson, S. Zhao, C. M. Fraser, J. Shetty, S. Shatsman, K. Geer, Y. Chen, S. Abramzon, W. C. Nierman, P. H. Havlak, R. Chen, K. J. Durbin, A. Egan, Y. Ren, X. Z. Song, B. Li, Y. Liu, X. Qin, S. Cawley, K. C. Worley, A. J. Cooney, L. M. D'Souza, K. Martin, J. Q. Wu, M. L. Gonzalez-Garay, A. R. Jackson, K. J. Kalafus, M. P. McLeod, A. Milosavljevic, D. Virk, A. Volkov, D. A. Wheeler, Z. Zhang, J. A. Bailey, E. E. Eichler, E. Tuzun, E. Birney, E. Mongin, A. Ureta-Vidal, C. Woodwark, E. Zdobnov, P. Bork, M. Suyama, D. Torrents, M. Alexandersson, B. J. Trask, J. M. Young, H. Huang, H. Wang, H. Xing, S. Daniels, D. Gietzen, J. Schmidt, K. Stevens, U. Vitt, J. Wingrove, F. Camara, M. Mar Albà, J. F. Abril, R. Guigo, A. Smit, I. Dubchak, E. M. Rubin, O. Couronne, A. Poliakov, N. Hübner, D. Ganten, C. Goesele, O. Hummel, T. Kreitler, Y. A. Lee, J. Monti, H. Schulz, H. Zimdahl, H. Himmelbauer, H. Lehrach, H. J. Jacob, S. Bromberg, J. Gullings-Handley, M. I. Jensen-Seaman, A. E. Kwitek, J. Lazar, D. Pasko, P. J. Tonellato, S. Twigger, C. P. Ponting, J. M. Duarte, S. Rice, L. Goodstadt, S. A. Beatson, R. D. Emes, E. E. Winter, C. Webber, P. Brandt, G. Nyakatura, M. Adetobi, F. Chiaromonte, L. Elnitski, P. Eswara, R. C. Hardison, M. Hou, D. Kolbe, K. Makova, W. Miller, A. Nekrutenko, C. Riemer, S. Schwartz, J. Taylor, S. Yang, Y. Zhang, K. Lindpaintner, T. D. Andrews, M. Caccamo, M. Clamp, L. Clarke, V. Curwen, R. Durbin, E. Eyras, S. M. Searle, G. M. Cooper, S. Batzoglou, M. Brudno, A. Sidow, E. A. Stone, J. C. Venter, B. A. Payseur, G. Bourque, C. López-Otín, X. S. Puente, K. Chakrabarti, S. Chatterji, C. Dewey, L. Pachter, N. Bray, V. B. Yap, A. Caspi, G. Tesler, P. A. Pevzner, D. Haussler, K. M. Roskin, R. Baertsch, H. Clawson, T. S. Furey, A. S. Hinrichs, D. Karolchik, W. J. Kent, K. R. Rosenbloom, H. Trumbower, M. Weirauch, D. N. Cooper, P. D. Stenson, B. Ma, M. Brent, M. Arumugam, D. Shteynberg, R. R. Copley, M. S. Taylor, H. Riethman, U. Mudunuri, J. Peterson, M. Guyer, A. Felsenfeld, S. Old, S. Mockrin, F. Collins, posted to comparative_genomics genome_paper rat by stajich on 2007-12-16 01:02:12 as along with 7 people and 4 groups taroleo gjuggler aprasad ccots rvosa dchughes djkt FAB-lab G4ID Genetics-of-Gambling Mycology
	The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. [My Copy] PLoS biology, Vol. 1, No. 2. (1 November 2003), e45. by Lincoln D. Stein, Zhirong Bao, Darin Blasiar, et al.Thomas Blumenthal, Michael R. Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'Eustachio, David H. Fitch, Lucinda A. Fulton, Robert E. Fulton, Sam Griffiths-Jones, Todd W. Harris, LaDeana W. Hillier, Ravi Kamath, Patricia E. Kuwabara, Elaine R. Mardis, Marco A. Marra, Tracie L. Miner, Patrick Minx, James C. Mullikin, Robert W. Plumb, Jane Rogers, Jacqueline E. Schein, Marc Sohrmann, John Spieth, Jason E. Stajich, C. Wei, David Willey, Richard K. Wilson, Richard Durbin, Robert H. Waterston posted to briggsae caenorhabditis comparative_genomics genome_paper nematode by stajich on 2007-12-16 01:00:16 as along with 4 people and 2 groups rshe thegoose2 tharris sujaikumar C. elegans / WormBase Mycology
	Distinguishing protein-coding and noncoding genes in the human genome [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19428-19433. by Michele Clamp, Ben Fry, Mike Kamal, et al.Xiaohui Xie, James Cuff, Michael F. Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S. Lander posted to annotation comparative_genomics gene_finding genome_annotation human noncoding by stajich on 2007-12-09 07:18:24 as along with 17 people and 3 groups antonkratz jo_davies tmmurali rvosa balicea sebastien_vigneau giovanni neils cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio Ema EisenLab FAB-lab Mycology
	Targeted discovery of novel human exons by comparative genomics [My Copy] Genome Res. (7 November 2007), gr.7128207. by Adam Siepel, Mark Diekhans, Brona Brejova, et al.Laura Langton, Michael Stevens, Charles L. Comstock, Colleen Davis, Brent Ewing, Shelly Oommen, Christopher Lau, Hung-Chun Yu, Jianfeng Li, Bruce A. Roe, Phil Green, Daniela S. Gerhard, Gary Temple, David Haussler, Michael R. Brent posted to comparative_genomics gene_finding gene_prediction by stajich on 2007-11-19 21:02:23 as along with 2 people dchughes wenhan
	Comparative genomics of fungal allergens and epitopes shows widespread distribution of closely related allergen and epitope orthologues [My Copy] BMC Genomics, Vol. 7 (09 October 2006), 251. by Paul Bowyer, Marcin Fraczek, David W. Denning posted to allergen comparative_genomics genome fungi by stajich on 2007-09-04 22:04:45 as
	Identification and characterization of insect-specific proteins by genome data analysis [My Copy] BMC Genomics, Vol. 8 (04 April 2007), 93. by Guojie Zhang, Hongsheng Wang, Junjie Shi, et al.Xiaoling Wang, Hongkun Zheng, Gane K. Wong, Terry Clark, Wen Wang, Jun Wang, Le Kang posted to bioinformatics comparative_genomics evolution by stajich on 2007-04-19 22:05:57 as along with 3 people and 2 groups thegoose2 tharris dpollard C. elegans / WormBase EisenLab
	Evolution of sensory complexity recorded in a myxobacterial genome [My Copy] PNAS, Vol. 103, No. 41. (10 October 2006), pp. 15200-15205. by B. S. Goldman, W. C. Nierman, D. Kaiser, et al.S. C. Slater, A. S. Durkin, J. A. Eisen, C. M. Ronning, W. B. Barbazuk, M. Blanchard, C. Field, C. Halling, G. Hinkle, O. Iartchuk, H. S. Kim, C. Mackenzie, R. Madupu, N. Miller, A. Shvartsbeyn, S. A. Sullivan, M. Vaudin, R. Wiegand, H. B. Kaplan posted to cellular_signaling comparative_genomics development genome multicellular myxobacterial by stajich on 2006-12-12 14:29:31 as along with 3 people bjorns treangen blobbybirdman
	The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics [My Copy] PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45. by Lincoln D. Stein, Zhirong Bao, Darin Blasiar, et al.Thomas Blumenthal, Michael R. Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H. Fitch, Lucinda A. Fulton, Robert E. Fulton, Sam Griffiths-Jones, Todd W. Harris, Ladeana W. Hillier, Ravi Kamath, Patricia E. Kuwabara, Elaine R. Mardis, Marco A. Marra, Tracie L. Miner, Patrick Minx, James C. Mullikin, Robert W. Plumb, Jane Rogers, Jacqueline E. Schein, Marc Sohrmann, John Spieth, Jason E. Stajich, Chaochun Wei, David Willey, Richard K. Wilson, Richard Durbin, Robert H. Waterston posted to caenorhabditis comparative_genomics genome genome_evolution by stajich on 2006-12-08 21:09:37 as along with 2 people and 1 group indigoviolet sujaikumar EisenLab

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fungi	218
evolution	112
methods	68
multicellular	66
bioinformatics	61
genome	61
aspergillus	58
yeast	57
saccharomyces	45
neurospora	41
intron	40
cell_wall	39
phylogenetics	39
development	35
mirna	35
molecular_evolution	31
noncoding_rna	30
drosophila	29
smallrna	29
comparative_genomics	28
cryptococcus	28
phylogeny	28
basidiomycota	27
gene_expression	26
genome_evolution	25
pathogen	24
population_genomics	24
rnai	23
nextgensequencing	22
population_genetics	22
sequencing	21
sexual_development	21
phylogenomics	20
speciation	20
annotation	18
cell_surface	18
splicing	18
alternative_splicing	17
coccipaper	17
filamentous	17
rna_silencing	17
solexa	17
genome_paper	16
metazoa	16
positive_selection	16
bacteria	15
computational_biology	14
duplication	14
gene_family	13
intron_evolution	13
plant	13
alignment	12
assembly	12
gene_duplication	12
genome_annotation	12
human	12
intron_loss	12
meiosis	12
plantpathogen	12
smallrna_paper	12
coccidioides	11
gene_tree	11
genomics	11
pombe	11
shortread	11
synteny	11
transcription	11
virus	11
antifungal	10
coprinus	10
eukaryota	10
gene	10
horizontal_gene_transfer	10
mating_genes	10
mushroom	10
regulation	10
rna	10
selection	10
chytrid	9
gene_prediction	9
intron_gain	9
mating_type	9
selection_test	9
zygomycota	9
ascomycota	8
beta-glucan	8
caenorhabditis	8
candida	8
database	8
dictyostelium	8
gene_finding	8
recombination	8
repeats	8
silencing	8
species_tree	8
batrachochytrium	7
binding_site	7
cellular_signaling	7
cellulose_synthase	7
evodevo	7
halophile	7
halophilic	7
hypersaline	7
light_response	7
marine	7
metagenomics	7
microarray	7
mycovirus	7
noncoding	7
oomycete	7
plants	7
signaling	7
software	7
symbiosis	7
virulence	7
virulence_factor	7
adhesion	6
ant	6
chipseq	6
coevolution	6
est	6
gene_regulation	6
hydrophobin	6
mrna	6
mutation_rate	6
mycorrhizal	6
polymorphism	6
sex_chromosome	6
snp	6
spore	6
toxin	6
transcription_factor	6
ustilago	6
volvox	6
codon_bias	5
codon_model	5
ecology	5
environmental_microbiology	5
meiotic_silencing	5
metazoan	5
microsporidia	5
mutalism	5
p450	5
paml	5
penicillium	5
posttranscriptional	5
prediction	5
protein	5
protein_evolution	5
resequencing	5
review	5
rhizopus	5
rip	5
rna_gene	5
rnaseq	5
secondary_metabolite	5
snorna	5
statistics	5
stress_response	5
transposable_elements	5
transposon	5
adaptation	4
animal	4
antisense_transcription	4
asexual_development	4
blastomyces	4
chitin	4
cis-regulatory	4
comparative	4
cryptic_species	4
dimorphism	4
dna	4
dsrna	4
enzyme	4
flagella	4
gene_silencing	4
glucan	4
histoplasma	4
hyphal_growth	4
infection	4
infectious_disease	4
mapping	4
microbial	4
moniliophthora	4
morphology	4
msud	4
nematode	4
orthology	4
phanerochaete_chrysosporium	4
pheremone	4
phylogenetic_marker_selection	4
podospora	4
proteomics	4
psychrophile	4
schizophyllum	4
secreted	4
sequence_analysis	4
simulation	4
sirna	4
smut	4
sugar	4
systematics	4
transcriptional_regulation	4
tree	4
tree_reconcilation	4
whole_genome	4
454	3
adaptive	3
amanita	3
anopheles	3
apicomplexa	3
arabidopsis	3
argonaute	3
ascosphaera	3
ascospore	3
biogenesis	3
biosynthesis	3
browser	3
cellulase	3
centromere	3
chytridgenomepaper	3
circadian	3
combiners	3
conidial	3
cooperation	3
copy_number_variation	3
crystalstructure	3
defense	3
dicer	3
disease	3
diversity	3
domestication	3
drug_resistance	3
evolutionary_theory	3
expansion	3
extremophile	3
frog	3
fungus	3
fusarium	3
genotype	3
honeybee	3
hyphal	3
illumina	3
magnaporthe	3
mammal	3
microbotryum	3
mosquito	3
motif	3
mucor	3
multiple_sequence_alignment	3
network	3
neurospora_tetrasperma	3
nmd	3
nuclear_export	3
opisthokont	3
paralogs	3
photoreceptor	3
phytophthora	3
plant-microbe	3
promotor	3
protein_localization	3
protist	3
rdna	3
regulatory_evolution	3
resistance	3
riboswitch	3
rnaworld	3
septin	3
thermophile	3
transporter	3
trichoderma	3
trna	3
variation	3
12flies	2
algae	2
algorithm	2
alpha_amylase	2
analysis	2
antisense	2
apicomplexia	2
apoptosis	2
aquatic	2
array	2
automation	2
bioperl	2
bioremediation	2
blogging	2
cacao	2
cellulose	2
cell_wall_genes	2
cell_wall_integrity	2
centrosome	2
character_evolution	2
chitin_synthase	2
chlamydomonas	2
coalescent	2
coelomata	2
cold	2
comparison	2
complexity	2
cryphonectria	2
cytochrome	2
divergence_time	2
dothideomycete	2
ecdysozoa	2
ectomycorrhizal	2
endophyte	2
expression	2
fks1	2
floculation	2
folding	2
fractal	2
functional_prediction	2
gene_network	2
genome_duplication	2
germination	2
glucanase	2
g-proteins	2
growth	2
heterokaryon	2
het_loci	2
hmm	2
htg	2
imaging	2
infrastructure	2
iron	2
its_sequence	2
keritinophilic	2
laccaria	2
linkage	2
maize	2
mating_systems	2
microscopy	2
mitochondria	2
module	2
moss	2
mycelia	2
mycotoxin	2
natural_selection	2
ncrna	2
neutral	2
news	2
notch	2
nrps	2
nuclear	2
pathway_construction	2
penicillin	2
pezizomycete	2
phanerochaete	2
phenotypic	2
photosynthesis	2
phycomyces	2
phylogenetic_profiling	2
phylogeography	2
pirna	2
primate	2
publishing	2
puccinia	2
qtl	2
rearrangement	2
receptor	2
reconciliation	2
reconstruction	2
retrotransposon	2
ribosomal	2
ribosomes	2
rnasep	2
rotting	2
secretion	2
secretory	2
senescence	2
sexual_selection	2
soil	2
supertree	2
telomerase	2
test	2
transcript	2
translational_control	2
treeoflife	2
utr	2
visualization	2
wheat	2
witchesbroom	2
woroninbody	2
5	1
5prime	1
5s	1
aedes	1
aeriel_hyphae	1
ageing	1
aging	1
agrobacterium	1
airborne	1
allelefreq	1
allergen	1
alpha-glucosidase	1
amino_acid	1
amphibian	1
amplification	1
ancient_dna	1
animal_evolution	1
antagonistic	1
anthocyanin	1
anthrax	1
antioxidant	1
arbuscular	1
archea	1
armillaria	1
ashbya	1
association_study	1
autolysis	1
azole	1
baisidiomycota	1
bait	1
balancing_selection	1
barcode	1
basal_body	1
bdpearl	1
beetle	1
behavior	1
biodiversity	1
biofilm	1
biofuel	1
biogeography	1
biotroph	1
birthdeath	1
boletales	1
briggsae	1
bwa	1
c4	1
calcium_levels	1
cancer	1
canine	1
carbon_footprint	1
carnivorous	1
caspofungin	1
ccd	1
cell_surface_interactions	1
cellulose_binding_domain	1
cellulose_degradation	1
cell_wall_components	1
cell_wall_proteins	1
cgh	1
chalkbrood	1
chemical_genomics	1
chemotaxis	1
chitosan	1
chlamy	1
chocolate	1
chordate	1
chromatin	1
chromosome	1
cilia	1
citrus	1
cladosporium	1
classification	1
claviceps	1
climate_change	1
clinal	1
clinical	1
clock	1
cnidaria	1
coal	1
coccipopgen	1
cocoa	1
co-evolution	1
colony	1
colony_collapse	1
condida	1
conservation	1
conserved	1
coral	1
corrie	1
cospeciation	1
cpg	1
crinkler	1
dandruff	1
databases	1
data_mining	1
dating	1
deep-sea	1
deleterious	1
dermatophytes	1
design	1
diatom	1
diesel	1
dispersal	1
divergence	1
divergent_genes	1
dobzhansky-muller	1
dollo	1
ecological_speciation	1
editorial	1
effectors	1
emerging	1
endosymbiont	1
engineering	1
enrichment	1
ensembl	1
ensemblcompara	1
enviroment	1
environment	1
epistasis	1
eqtl	1
ergosterol	1
ethnobotany	1
even-skipped	1
evogene	1
evolutionary_biology	1
excavata	1
experimental_evolution	1
export	1
extinction	1
farming	1
fdr	1
fitness	1
fluconazole	1
fly	1
fossil	1
fruitingbody	1
fuel	1
funding	1
fungicide	1
gene_ontology	1
gene_structure	1
genetic_code	1
genetic_incompatibility	1
genetic_screen	1
gh6	1
gpcr	1
g_protein	1
graphics	1
gui	1
h1n1	1
h3k9	1
heat_shock	1
herbarium	1
heterobasidion	1
heterochromatin	1
heterotachy	1
heterozygosity	1
hill_roberts	1
histone	1
hiv	1
homoplasy	1
hortaea	1
hot_spring	1
hybrid_incompatibility	1
hybridization	1
hydra	1
hydrogenase	1
hyphal_fusion	1
imprinting	1
incompatibility	1
indels	1
index_of_association	1
influenza	1
informatics	1
insect	1
interfaction	1
intron_sliding	1
invasive	1
invasive_species	1
jakobid	1
journal	1
keratin	1
kinase	1
knock-out	1
labeling	1
lab_library	1
lab_tools	1
laea	1
largest_organism	1
lateral_gene_transfer	1
leishmania	1
library	1
lichen	1
lineage-specific	1
live_imaging	1
ltr	1
luciferase	1
macaque	1
malaria	1
mammalian	1
mammoth	1
mass_spec	1
mcmc	1
medical	1
medical_mycology	1
melanin	1
membrane	1
metabolic_network	1
metalloproteinase	1
method	1
microbiology	1
microbiome	1
missing_words	1
model_system	1
modernsynthesis	1
morphogenesis	1
mouse	1
multicellular_animals	1
multicellularity	1
mutagenesis	1
myosin	1
mytilus	1
myxobacterial	1
necrotroph	1
nitrogen	1
non-self-recognition	1
normalization	1
notch_pathway	1
nucleosome	1
nucleus	1
ocean	1
onygenales	1
opsin	1
orphan	1
oscillator	1
oxidative_stress	1
paenibacillus	1
paracoccidioides	1
parallel	1
parasexual	1
parasite	1
parser	1
parsimony	1
pathogenic_fungi	1
pattern	1
perl	1
peroxidase	1
peroxisomes	1
pgm	1
phagocytosis	1
philosophyofscience	1
phototaxis	1
phylocode	1
phylogenomic	1
phyloinformatics	1
physcomitrella	1
physiology	1
phytochrome	1
phytophthora_infestans	1
pichia	1
piwi	1
pks	1
plant_cell_wall	1
plosone_highlight	1
pneumocystis	1
policy	1
polya	1
populus	1
positive_selecion	1
primer_design	1
prion	1
probabilistic_graph	1
profiling	1
prokaryotes	1
proteases	1
protein_interactions	1
protocols	1
protoplast	1
publication	1
quantitative_genetics	1
r	1
rab	1
rad50	1
randomforest	1
rangequery	1
rat	1
report	1
rna_binding	1
rodent	1
ros	1
rotifer	1
rrna	1
rust	1
rxlr	1
same_sex_mating	1
science	1
scienceblog	1
screen	1
scripts	1
segregation	1
selfing	1
sensing	1
septalplug	1
sequence	1
sesquiterpene	1
sex	1
sexual_recombination	1
simluation	1
site	1
sordaria	1
species	1
species_comparison	1
species-specific	1
spindlepolebody	1
spombe	1
s_pombe	1
sponge	1
sporulation	1
sr	1
ssr	1
stagonospora	1
stonewashed	1
structure	1
substrate	1
subtractive_hybridization	1
sugar_transporter	1
tag	1
target	1
taxonomy	1
tbrucei	1
tetraspannin	1
theory	1
transcription_profiling	1
translation	1
transposase	1
tree_comparison	1
trypanosome	1
turnover	1
tyrosine	1
undergraduate_research	1
uorf	1
validation	1
vegetative_compatibility	1
vertebrate	1
wasp	1
wcc	1
wga	1
wiki	1
word_frequency	1
worm	1
wtf	1
xml	1
yellowstone	1
zoospore	1

stajich's comparative_genomics [28 articles] Export

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