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stajich's evolution [78 articles]

Recent papers added to stajich's library classified by the tag evolution. You can also see everyone's evolution.
  • EVOLUTION: Modernizing the Modern Synthesis
    Science, Vol. 321, No. 5886. (11 July 2008), pp. 196-197.
    by Elizabeth Pennisi
    posted to modernsynthesis evolutionary_theory evolution by stajich on 2008-07-25 06:44:15 as ** along with 1 person and 1 group renatomilani Berkeley Mycology
  • Evolution and phylogenetic relationships of APSES proteins from Hemiascomycetes.
    FEMS yeast research, Vol. 8, No. 4. (June 2008), pp. 511-519.
    by B Ramírez-Zavala, A Domínguez
    posted to saccharomyces phylogenetics fungi evolution by stajich on 2008-07-21 04:13:26 as ** along with 1 group Berkeley Mycology
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to transcription_factor promotor evolution evodevo even-skipped drosophila binding_site by stajich on 2008-06-28 18:16:38 as ** along with 5 people and 2 groups emptyhb pradiptaray cisevol caseybrown djkt cis-regulatory-evolution Berkeley Mycology
  • Tinker where the tinkering's good.
    Trends in genetics : TIG (29 May 2008)
    by Matthew V V Rockman, David L L Stern
    posted to evolution evodevo drosophila cis-regulatory by stajich on 2008-06-22 20:12:47 as ** along with 1 person and 1 group Stew Berkeley Mycology
  • Alternative splicing: A missing piece in the puzzle of intron gain.
    Proceedings of the National Academy of Sciences of the United States of America (7 May 2008)
    by Rosa Tarrío, Francisco J J Ayala, Francisco Rodríguez-Trelles
    posted to intron_sliding intron_loss intron_gain intron_evolution evolution by stajich on 2008-06-20 18:00:41 as ** along with 3 people and 1 group clearbluespring bootsy imtechnology Berkeley Mycology
  • An Improved General Amino Acid Replacement Matrix
    Mol Biol Evol, Vol. 25, No. 7. (1 July 2008), pp. 1307-1320.
    by Si Q Le, Olivier Gascuel
    posted to protein_evolution phylogenetics molecular_evolution methods evolution bioinformatics by stajich on 2008-06-14 07:08:00 as ** along with 1 person and 1 group friendpine Berkeley Mycology
  • The transcription factor NF-kappaB in the demosponge Amphimedon queenslandica: insights on the evolutionary origin of the Rel homology domain.
    Development genes and evolution, Vol. 218, No. 1. (January 2008), pp. 23-32.
    by M Gauthier, BM Degnan
    posted to multicellular metazoa evolution development by stajich on 2008-06-09 00:54:16 as ** along with 1 group Berkeley Mycology
  • Genome Analysis of the Unicellular Green Alga Chlamydomonas reinhardtii Indicates an Ancient Evolutionary Origin for Key Pattern Recognition and Cell-Signaling Protein Families
    Genetics, Vol. 179, No. 1. (1 May 2008), pp. 193-197.
    by Glen L Wheeler, Diego Miranda-Saavedra, Geoffrey J Barton
    posted to signaling genome_evolution genome gene_family evolution chlamydomonas by stajich on 2008-05-26 16:51:35 as ** along with 1 person and 1 group cmzmasek Berkeley Mycology
  • Complete mitochondrial genome sequence of the wine yeast Candida zemplinina: intraspecies distribution of a novel group-IIB1 intron with eubacterial affiliations.
    FEMS yeast research, Vol. 8, No. 2. (March 2008), pp. 311-327.
    by PV Pramateftaki, VN Kouvelis, P Lanaridis, MA Typas
    posted to yeast intron evolution candida by stajich on 2008-05-11 23:44:29 as ** along with 1 group Berkeley Mycology
  • Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation
    Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 552-562.
    by Herve Hogues, Hugo Lavoie, Adnane Sellam, Maria Mangos, Terry Roemer, Enrico Purisima, Andre Nantel, Malcolm Whiteway
    posted to transcription_factor ribosomes fungi evolution by stajich on 2008-05-05 02:58:13 as ** along with 1 person and 1 group zwang Berkeley Mycology
  • Rapid large-scale evolutionary divergence in morphology and performance associated with exploitation of a different dietary resource.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 12. (25 March 2008), pp. 4792-4795.
    by A Herrel, K Huyghe, B Vanhooydonck, T Backeljau, K Breugelmans, I Grbac, R Van Damme, DJ Irschick
    posted to evolution by stajich on 2008-05-02 02:05:55 as ** along with 2 people and 1 group iBartomeus operon Berkeley Mycology
  • Discovering microRNAs from deep sequencing data using miRDeep
    Nature Biotechnology, Vol. 26, No. 4., pp. 407-415.
    by Marc R Friedländer, Wei Chen, Catherine Adamidi, Jonas Maaskola, Ralf Einspanier, Signe Knespel, Nikolaus Rajewsky
    posted to smallrna mirna methods evolution by stajich on 2008-04-25 23:40:15 as ** along with 3 people and 1 group jfr tmmurali giovanni Berkeley Mycology
  • Adaptive Evolution of Newly Emerged Micro-RNA Genes in Drosophila
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 929-938.
    by Jian Lu, Yonggui Fu, Supriya Kumar, Yang Shen, Kai Zeng, Anlong Xu, Richard Carthew, Chung-I Wu
    posted to smallrna mirna evolution drosophila by stajich on 2008-04-25 23:38:17 as ** along with 1 person and 1 group lp2 Berkeley Mycology
  • The birth and death of microRNA genes in Drosophila.
    Nat Genet (17 February 2008)
    by Jian Lu, Yang Shen, Qingfa Wu, Supriya Kumar, Bin He, Suhua Shi, Richard W W Carthew, San Ming M Wang, Chung-I I Wu
    posted to smallrna mirna methods evolution drosophila by stajich on 2008-04-25 23:38:05 as ** along with 5 people and 1 group djkt bootsy emptyhb cellison megraw Berkeley Mycology
  • Conservation of divergent transcription in fungi
    Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 207-211.
    by Philip R Kensche, Martin Oti, Bas E Dutilh, Martijn A Huynen
    posted to transcription fungi evolution divergent_genes by stajich on 2008-04-25 23:37:16 as ** along with 1 person and 1 group nklee Berkeley Mycology
  • DNA from herbarium specimens settles a controversy about origins of the European potato
    Am. J. Bot., Vol. 95, No. 2. (1 February 2008), pp. 252-257.
    by Mercedes Ames, David M Spooner
    posted to plant hybridization herbarium evolution by stajich on 2008-04-24 18:28:18 as ** along with 1 group Berkeley Mycology
  • Evolution of microRNAs and their targets: Are all microRNAs biologically relevant?
    Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. In Press, Uncorrected Proof
    by Michael J Axtell
    posted to smallrna mirna evolution by stajich on 2008-04-23 20:09:56 as ** along with 2 people and 1 group maralena eckart_bindewald Berkeley Mycology
  • The Evolutionary Trajectory of the Mating-Type (mat) Genes in Neurospora Relates to Reproductive Behavior of Taxa
    BMC Evolutionary Biology, Vol. 8 (11 April 2008), 109.
    by Lotta Wik, Magnus Karlsson, Hanna Johannesson
    posted to evolution mating_genes mating_type neurospora_tetrasperma by stajich on 2008-04-15 06:19:44 as ** along with 1 group Berkeley Mycology
  • The "Alternative" Choice of Constitutive Exons throughout Evolution.
    PLoS Genet, Vol. 3, No. 11. (16 November 2007)
    by Galit Lev-Maor, Amir Goren, Noa Sela, Eddo Kim, Hadas Keren, Adi Doron-Faigenboim, Shelly Leibman-Barak, Tal Pupko, Gil Ast
    posted to alternative_splicing evolution splicing by stajich on 2008-04-10 22:24:26 as ** along with 1 person and 1 group sebastien_vigneau Berkeley Mycology
  • The Evolution of Combinatorial Gene Regulation in Fungi
    PLoS Biology, Vol. 6, No. 2. (1 February 2008), e38.
    by Brian B Tuch, David J Galgoczy, Aaron D Hernday, Hao Li, Alexander D Johnson
    posted to evolution fungi gene_expression regulation by stajich on 2008-04-01 06:43:05 as ** along with 2 people and 1 group biomcgary cmzmasek Berkeley Mycology
  • The evolution of core proteins involved in microRNA biogenesis
    BMC Evolutionary Biology, Vol. 8 (25 March 2008), 92.
    by Dennis Murphy, Barry Dancis, James R Brown
    posted to biogenesis evolution mirna rnai rna_silencing by stajich on 2008-04-01 06:21:18 as ** along with 1 person and 1 group vinithepooh Berkeley Mycology
  • Structure and duplication of the centrosome
    J Cell Sci, Vol. 120, No. 13. (1 July 2007), pp. 2139-2142.
    by Juliette Azimzadeh, Michel Bornens
    posted to centrosome evolution fungi metazoa multicellular by stajich on 2008-03-05 17:59:15 as ** along with 1 group Berkeley Mycology
  • A phylogenomic investigation into the origin of Metazoa
    Mol Biol Evol (9 January 2008), msn006.
    by Inaki Ruiz-Trillo, Andrew J Roger, Gertraud Burger, Michael W Gray, Franz B Lang
    posted to evodevo evolution metazoa metazoan methods multicellular phylogenomics by stajich on 2008-03-05 17:54:57 as ** along with 2 people and 1 group cmzmasek renatomilani Berkeley Mycology
  • Ascus types are phylogenetically misleading in Trapeliaceae and Agyriaceae (Ostropomycetidae, Ascomycota).
    Mycol Res, Vol. 111, No. Pt 9. (September 2007), pp. 1133-1141.
    by HT Lumbsch, I Schmitt, A Mangold, M Wedin
    posted to evolution fungi homoplasy phylogenetics by stajich on 2008-03-03 22:15:30 as ** along with 1 group Berkeley Mycology
  • Algae as Tools for Cellulose Research
    (1990), pp. 20-39.
    by Malcolm R Brown
    edited by W Wiessner, DG Robinson, RC Starr
    posted to cellulose_synthase evolution oomycete by stajich on 2008-02-04 05:26:17 as ** along with 1 group Berkeley Mycology
  • Evolution of a family of metazoan active-site-serine enzymes from penicillin-binding proteins: a novel facet of the bacterial legacy
    BMC Evolutionary Biology, Vol. 8, No. 1. (2008)
    by Nina Peitsaro, Zydrune Polianskyte, Jarno Tuimala, Isabella P Ares, Julius Liobikas, Oliver Speer, Dan Lindholm, James Thompson, Ove Eriksson
    posted to enzyme evolution metazoan protein_evolution by stajich on 2008-01-29 16:41:37 as ** along with 1 group Berkeley Mycology
  • Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference
    BMC Genomics, Vol. 9 (23 January 2008), 31.
    by Tae-Sung Kim, James G Booth, Hugh G Gauch, Qi Sun, Jongsun Park, Yong-Hwan Lee, Kwangwon Lee
    posted to evolution neurospora repeats by stajich on 2008-01-27 20:24:17 as ** along with 1 group Berkeley Mycology
  • Conserved processes and lineage-specific proteins in fungal cell wall evolution.
    Eukaryot Cell, Vol. 6, No. 12. (December 2007), pp. 2269-2277.
    by JE Coronado, S Mneimneh, SL Epstein, WG Qiu, PN Lipke
    posted to cell_surface cell_wall evolution fungal by stajich on 2008-01-25 15:14:09 as ** along with 1 group Berkeley Mycology
  • Broadly sampled multigene trees of eukaryotes
    BMC Evolutionary Biology, Vol. 8 (18 January 2008), 14.
    by Hwan S Yoon, Jessica Grant, Yonas I Tekle, Min Wu, Benjamin C Chaon, Jeffrey C Cole, John M Logsdon, David J Patterson, Debashish Bhattacharya, Laura A Katz
    posted to eukarytoa evolution phylogeny by stajich on 2008-01-22 03:57:33 as ** along with 1 person and 1 group mblwhoi Berkeley Mycology
  • Profiling Phylogenetic Informativeness
    Systematic Biology, Vol. 56, No. 2. (2007), pp. 222-231.
    by Jeffrey P Townsend
    posted to evolution phylogenetic_marker_selection phylogenetics phylogenomics by stajich on 2007-12-06 22:46:04 as ** along with 3 people and 2 groups aprasad rvosa Jporci FAB-lab Berkeley Mycology
  • The UniMarker (UM) method for synteny mapping of large genomes.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3156-3165.
    by BY Liao, YJ Chang, JM Ho, MJ Hwang
    posted to evolution genome synteny by stajich on 2007-12-02 23:47:49 as ** along with 1 person and 1 group indigoviolet EisenLab
  • Automatic genome-wide reconstruction of phylogenetic gene trees.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
    posted to evolution genome phylogenetics synteny yeast by stajich on 2007-12-02 23:47:19 as read along with 3 people and 1 group tharris shigepong seitentaisei Berkeley Mycology
  • Wasp Gene Expression Supports an Evolutionary Link Between Maternal Behavior and Eusociality
    Science (27 September 2007), 1146647.
    by Amy L Toth, Kranthi Varala, Thomas C Newman, Fernando E Miguez, Stephen K Hutchison, David A Willoughby, Jan F Simons, Michael Egholm, James H Hunt, Matthew E Hudson, Gene E Robinson
    posted to behavior evolution gene_expression wasp by stajich on 2007-11-09 05:44:31 as ** along with 3 people zwang niallhaslam ale
  • Microbial Population Structures in the Deep Marine Biosphere
    Science, Vol. 318, No. 5847. (5 October 2007), pp. 97-100.
    by Julie A Huber, David B Welch, Hilary G Morrison, Susan M Huse, Phillip R Neal, David A Butterfield, Mitchell L Sogin
    posted to evolution microbial population_genetics by stajich on 2007-11-09 05:44:12 as ** along with 6 people and 3 groups Fabnot madhadron djkt mblwhoi kinestetika mellabee iSEEM Papers recommended by the Roscoff Plankton Group microbiology_nijmegen
  • Coevolution of genomic intron number and splice sites.
    Trends Genet, Vol. 23, No. 7. (July 2007), pp. 321-325.
    by M Irimia, D Penny, SW Roy
    posted to evolution intron splicing by stajich on 2007-11-09 05:42:43 as ** along with 4 people and 1 group dpollard GustavoLacerda Manchester seitentaisei EisenLab
  • Rampant Adaptive Evolution in Regions of Proteins with Unknown Function in Drosophila simulans.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by AK Holloway, DJ Begun
    posted to adaptive drosophila evolution genomics population_genomics by stajich on 2007-11-06 17:46:17 as *** along with 1 person and 1 group pradiptaray EisenLab
  • Accelerated rate of gene gain and loss in primates
    Genetics (18 October 2007), genetics.107.080077.
    by Matthew W Hahn, Jeffery P Demuth, Sang-Gook Han
    posted to evolution expansion gene_family human primate by stajich on 2007-10-20 13:45:26 as ** along with 1 person bpcusack
  • Protist Homologs of the Meiotic Spo11 Gene and Topoisomerase VI Reveal an Evolutionary History of Gene Duplication and Lineage-Specific Loss
    Mol Biol Evol (5 October 2007), msm217.
    by Shehre-Banoo Malik, Marilee A Ramesh, Alissa M Hulstrand, John M Logsdon
    posted to evolution meiosis protist by stajich on 2007-10-15 02:03:17 as **
  • The evolution of genetic networks by non-adaptive processes
    Nature Reviews Genetics, Vol. 8, No. 10., pp. 803-813.
    by Michael Lynch
    posted to evolution network by stajich on 2007-10-03 06:47:12 as ** along with 10 people and 2 groups lusk brant balicea dchughes aswin margaritis zwang nosada17 Stew lilith G4ID Genetics-of-Gambling
  • Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation
    BMC Bioinformatics, Vol. 8 (08 August 2007), 295.
    by Marija Cvijovic, Daniel Dalevi, Elizabeth Bilsland, Graham JL Kemp, Per Sunnerhagen
    posted to annotation evolution uorf yeast by stajich on 2007-10-01 04:09:37 as ** along with 1 person wenhan
  • The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis
    BMC Evolutionary Biology, Vol. 7, No. Suppl 2. (2007)
    by Marco Fondi, Matteo Brilli, Giovanni Emiliani, Donatella Paffetti, Renato Fani
    posted to amino_acid biosynthesis evolution pathway_construction by stajich on 2007-10-01 04:07:10 as **
  • Incipient speciation by divergent adaptation and antagonistic epistasis in yeast
    Nature, Vol. 447, No. 7144., pp. 585-588.
    by Jeremy R Dettman, Caroline Sirjusingh, Linda M Kohn, James B Anderson
    posted to antagonistic epistasis evolution neurospora speciation by stajich on 2007-09-28 07:18:12 as ** along with 3 people and 3 groups stevanspringer cjeans biomcgary FAB-lab Marcotte_Lab Berkeley Mycology
  • Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level
    Heredity, Vol. aop, No. current.
    by AL Hughes
    posted to adaptive evolution molecular_evolution by stajich on 2007-09-26 14:41:41 as ** along with 1 person stevanspringer
  • RNA world - the dark matter of evolutionary genomics
    Journal of Evolutionary Biology, Vol. 19, No. 6. (2006), pp. 1768-1774.
    by P Michalak
    posted to evolution mirna rna by stajich on 2007-09-26 14:30:54 as read along with 6 people and 5 groups dayjm marcius dchughes cdawson rabu chenlc03 G4ID BioinfoCIPF SGU-CIPF GIG Genetics-of-Gambling
  • Natural history and evolutionary principles of gene duplication in fungi
    Nature, Vol. 449, No. 7158., pp. 54-61.
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
    posted to evolution gene synteny yeast by stajich on 2007-09-05 20:39:04 as ** along with 11 people and 4 groups pkm aheilbut dpollard tny dchughes djkt zwang biomcgary lp2 tzhughes maximilianh EisenLab G4ID Genetics-of-Gambling Berkeley Mycology
  • notes Analysis of expressed sequence tags of the cyclically parthenogenetic rotifer Brachionus plicatilis.
    PLoS ONE, Vol. 2 (2007)
    by K Suga, D Mark Welch, Y Tanaka, Y Sakakura, A Hagiwara
    posted to est evolution rotifer by stajich on 2007-08-15 05:39:01 as **
  • Splicing and the Evolution of Proteins in Mammals
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e14.
    by Joanna L Parmley, Araxi O Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D Hurst
    posted to evolution intron phylogenetics protein protein_evolution alternative_splicing by stajich on 2007-06-27 05:34:01 as ** along with 7 people and 7 groups operon aalibes dpollard dchughes kehan jwestbrook gileswl biodiversity_conservation Bioinformatics EisenLab G4ID King_Lab GrassBase Genetics-of-Gambling
  • The evolution of spliceosomal introns in alveolates.
    Mol Biol Evol, Vol. 24, No. 5. (May 2007), pp. 1093-1096.
    by HD Nguyen, M Yoshihama, N Kenmochi
    posted to evolution intron by stajich on 2007-06-27 05:31:55 as ** along with 1 person and 1 group jwestbrook King_Lab
  • The frailty of adaptive hypotheses for the origins of organismal complexity.
    Proc Natl Acad Sci U S A (9 May 2007)
    by Michael Lynch
    posted to adaptive evolution by stajich on 2007-05-22 06:37:34 as ***** along with 4 people and 1 group bpcusack stevanspringer shaviro margaritis FAB-lab
  • The evolution of Mammalian gene families.
    PLoS ONE, Vol. 1 (2006)
    by JP Demuth, TD Bie, JE Stajich, N Cristianini, MW Hahn
    posted to evolution gene_family mammal by stajich on 2007-05-22 06:35:12 as read along with 1 person bpcusack
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