stajich's genome [61 articles] Export

Recent papers added to stajich's library classified by the tag genome. You can also see everyone's genome.

	The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. [My Copy] Nucleic acids research (22 September 2009) by Martha B. Arnaud, Marcus C. Chibucos, Maria C. Costanzo, et al.Jonathan Crabtree, Diane O. Inglis, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman, Gavin Sherlock posted to genome database aspergillus by stajich on 2009-09-27 22:08:20 as along with 1 group Mycology
	Genomic Analyses of the Microsporidian Nosema ceranae, an Emergent Pathogen of Honey Bees [My Copy] PLoS Pathog, Vol. 5, No. 6. (5 June 2009), e1000466. by R. Scott Cornman, Yan P. Chen, Michael C. Schatz, et al.Craig Street, Yan Zhao, Brian Desany, Michael Egholm, Stephen Hutchison, Jeffery S. Pettis, W. Ian Lipkin, Jay D. Evans posted to microsporidia genome by stajich on 2009-08-14 06:35:55 as along with 1 person and 2 groups gillianturgeon Mycology Journal picks
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to bioinformatics genome mapping nextgensequencing sequencing shortread by stajich on 2009-05-22 17:40:49 as along with 22 people and 4 groups heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Stew farhat humburg kshameer operon GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Mycology Journal picks Bioinformatics
	Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome [My Copy] PLoS Genet, Vol. 5, No. 5. (15 May 2009), e1000485. by Jonathan L. Gordon, Kevin P. Byrne, Kenneth H. Wolfe posted to evolution genome reconstruction yeast by stajich on 2009-05-15 16:34:48 as along with 4 people and 1 group bpcusack cabbagesofdoom leomrtns djkt Mycology
	A Functional Role for Transposases in a Large Eukaryotic Genome [My Copy] Science, Vol. 324, No. 5929. (15 May 2009), pp. 935-938. by Mariusz Nowacki, Brian P. Higgins, Genevieve M. Maquilan, Estienne C. Swart, Thomas G. Doak, Laura F. Landweber posted to eukaryota genome transposase transposon by stajich on 2009-05-15 01:40:19 as along with 8 people and 1 group operon GustavoLacerda orzenil gwallau gdb mhiromi yves_cite leliavski Mycology
	On finding minimal absent words [My Copy] BMC Bioinformatics, Vol. 10 (08 May 2009), 137. by Armando, Joao M. O. S. Rodrigues posted to dna genome missing_words pattern word_frequency by stajich on 2009-05-14 07:10:26 as along with 1 person and 1 group lptolik Mycology
	Chromosomal Rearrangements between Serotype A and D Strains in Cryptococcus neoformans [My Copy] PLoS ONE, Vol. 4, No. 5. (13 May 2009), e5524. by Sheng Sun, Jianping Xu posted to cryptococcus genome genome_evolution rearrangement synteny by stajich on 2009-05-13 20:41:23 as along with 1 group Mycology
	Widespread Genomic Signatures of Natural Selection in Hominid Evolution [My Copy] PLoS Genet, Vol. 5, No. 5. (8 May 2009), e1000471. by Graham Mcvicker, David Gordon, Colleen Davis, Phil Green posted to evolution genome human population_genomics by stajich on 2009-05-13 07:01:01 as along with 8 people and 1 group bhengeveld jbhiatt gjuggler lp2 farhat ilyashl djkt sameersoi Mycology
	Cloning and transcript analysis of multiple genes encoding the glycoside hydrolase family 6 enzyme from Coprinopsis cinerea. [My Copy] Bioscience, biotechnology, and biochemistry, Vol. 73, No. 1. (January 2009), pp. 67-73. by M. Yoshida, K. Sato, S. Kaneko, K. Fukuda posted to coprinus genome gh6 by stajich on 2009-04-05 22:29:28 as along with 1 group Mycology
	Detecting heterozygosity in shotgun genome assemblies: Lessons from obligately outcrossing nematodes [My Copy] Genome Research, Vol. 19, No. 3. (March 2009), pp. 470-480. by Antoine Barrière, Shiaw-Pyng Yang, Elizabeth Pekarek, Cristel G. Thomas, Eric S. Haag, Ilya Ruvinsky posted to annotation genome heterozygosity methods sequencing by stajich on 2009-03-03 21:59:02 as along with 1 person and 1 group natstreet Mycology
	Quantitative Measures for the Management and Comparison of Annotated Genomes [My Copy] BMC Bioinformatics, Vol. 10 (23 February 2009), 67. by K. Eilbeck, B. Moore, C. Holt, M. Yandell posted to annotation bioinformatics comparison genome methods by stajich on 2009-02-28 19:31:37 as along with 3 people and 1 group jmeppley timflutre druvus Mycology
	The mitochondrial view of Blastocladiella emersonii. [My Copy] Gene, Vol. 424, No. 1-2. (15 November 2008), pp. 33-39. by J. H. Tambor, K. F. Ribichich, S. L. Gomes posted to chytrid genome mitochondria by stajich on 2009-01-18 21:30:00 as along with 1 group Mycology
	Differential selection on gene translation efficiency between the filamentous fungus Ashbya gossypii and yeasts [My Copy] BMC Evolutionary Biology, Vol. 8 (29 December 2008), 343. by Huifeng, Zhenglong Gu posted to ashbya codon_bias genome by stajich on 2008-12-30 05:39:38 as along with 1 group Mycology
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to assembly genome sequencing shortread solexa by stajich on 2008-12-08 19:48:44 as along with 17 people and 1 group n00c carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus hpaces GustavoLacerda Mycology
	Titration of repeat-induced point mutation (RIP) by chromosome segment duplications in Neurospora crassa. [My Copy] Genetica, Vol. 134, No. 3. (November 2008), pp. 267-275. by P. K. Singh, D. P. Kasbekar posted to evolution genome rip by stajich on 2008-11-23 21:21:05 as along with 1 group Mycology
	Moniliophthora perniciosa, the causal agent of witches' broom disease of cacao: what's new from this old foe? [My Copy] Molecular plant pathology, Vol. 9, No. 5. (September 2008), pp. 577-588. by Lyndel W. Meinhardt, Johana Rincones, Bryan A. Bailey, et al.M. Catherine Aime, Gareth W. Griffith, Dapeng Zhang, Gonçalo A. Pereira posted to cacao genome moniliophthora by stajich on 2008-11-23 21:20:49 as along with 1 person and 1 group GustavoLacerda Mycology
	A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Jorge Mondego, Marcelo Carazzolle, Gustavo Costa, et al.Eduardo Formighieri, Lucas Parizzi, Johana Rincones, Carolina Cotomacci, Dirce Carraro, Anderson Cunha, Helaine Carrer, Ramon Vidal, Raissa Estrela, Odalys Garcia, Daniela Thomazella, Bruno de Oliveira, Acassia Pires, Maria C. Rio, Marcos R. Araujo, Marcos de Moraes, Luis Castro, Karina Gramacho, Marilda Goncalves, Jose M. Neto, Aristoteles G. Neto, Luciana Barbosa, Mark Guiltinan, Bryan Bailey, Lyndel Meinhardt, Julio Cascardo, Goncalo Pereira posted to cacao fungi genome moniliophthora plantpathogen witchesbroom by stajich on 2008-11-23 21:20:31 as along with 1 person and 1 group GustavoLacerda Mycology
	Funybase: a Fungal phylogenomic database [My Copy] BMC Bioinformatics, Vol. 9 (27 October 2008), 456. by Sylvain Marthey, Gabriela Aguileta, Francois Rodolphe, et al.Annie Gendrault, Tatiana Giraud, Elisabeth Fournier, Manuela Lopez-Villavicencio, Angelique Gautier, Marc-Henri Lebrun, Helene Chiapello posted to annotation database fungi genome phylogenetics phylogenomics by stajich on 2008-10-29 22:23:48 as along with 6 people and 1 group GustavoLacerda fungal nlapalu ojabado druvus nklee Mycology
	Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by J. Soh, P. M. Gordon, M. L. Taschuk, et al.A. Dong, A. C. Ah-Seng, A. L. Turinsky, C. W. Sensen posted to annotation bioinformatics browser genome xml by stajich on 2008-10-29 22:23:18 as along with 9 people and 2 groups dcolosi treangen guhjy barriot Zephyrus joaocarrico GeeSharpMinor neils druvus Mycology Roswell Cancer Crosstalk
	A Catalog of Neutral and Deleterious Polymorphism in Yeast [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000183. by Scott W. Doniger, Hyun S. Kim, Devjanee Swain, et al.Daniella Corcuera, Morgan Williams, Shiaw-Pyng Yang, Justin C. Fay posted to deleterious genome mutation_rate neutral polymorphism saccharomyces by stajich on 2008-10-27 20:00:34 as along with 6 people and 1 group GustavoLacerda madreach druvus emptyhb bpcusack caseybrown Mycology
	Automatically extracting functionally equivalent proteins from SwissProt [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Lisa Mcmillan, Andrew Martin posted to annotation data_mining database genome by stajich on 2008-10-09 01:59:43 as along with 4 people and 1 group mitko Keywan druvus renatomilani Mycology
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to assembly bacteria genome shortread solexa by stajich on 2008-09-26 16:01:15 as along with 16 people and 5 groups n00c operon michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen Mycology
	Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 39. (30 September 2008), pp. 14802-14807. by Charles H. Opperman, David M. Bird, Valerie M. Williamson, et al.Dan S. Rokhsar, Mark Burke, Jonathan Cohn, John Cromer, Steve Diener, Jim Gajan, Steve Graham, T. D. Houfek, Qingli Liu, Therese Mitros, Jennifer Schaff, Reenah Schaffer, Elizabeth Scholl, Bryon R. Sosinski, Varghese P. Thomas, Eric Windham posted to annotation genome nematode plantpathogen sequence_analysis sequencing by stajich on 2008-09-24 22:50:05 as along with 2 people and 2 groups tharris orzenil C. elegans / WormBase Mycology
	Longer First Introns Are a General Property of Eukaryotic Gene Structure [My Copy] PLoS ONE, Vol. 3, No. 8. (2008), e3093. by Keith R. Bradnam, Ian Korf posted to annotation gene_structure genome intron intron_evolution eukaryota by stajich on 2008-09-07 20:20:30 as along with 2 people and 1 group GustavoLacerda bpcusack Mycology
	Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. [My Copy] Genome research (29 August 2008) by Vardges Ter-Hovhannisyan, Alexandre Lomsadze, Yury O O. Chernoff, Mark Borodovsky posted to annotation bioinformatics fungi gene_prediction genome methods by stajich on 2008-09-07 20:19:51 as along with 5 people and 1 group kiekyon jmartin49 GustavoLacerda orzenil bcondon Mycology
	Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges [My Copy] Nat Rev Genet, Vol. 9, No. 9. (September 2008), pp. 678-688. by Lincoln D. Stein posted to bioinformatics database genome informatics infrastructure by stajich on 2008-08-19 16:25:02 as along with 28 people and 4 groups lmichan artaban421 tomjad n00c PaoloRomano thegoose2 fisherp emayorga nuin rdiaz bmaust guhjy carolh12 ilya alaninmcr druvus srp33 dullhunk tharris mrochman dansullivanblk neils jandot GustavoLacerda jago fgibson thomaskelder sjcockell Mycology Integrative Expertise for Global Health Convention on Knowledge Commons Poverty Alleviation from Access to Knowledge
	Comparative Genome Analysis of Filamentous Fungi Reveals Gene Family Expansions Associated with Fungal Pathogenesis [My Copy] PLoS ONE, Vol. 3, No. 6. (4 June 2008), e2300. by Darren M. Soanes, Intikhab Alam, Mike Cornell, et al.Han M. Wong, Cornelia Hedeler, Norman W. Paton, Magnus Rattray, Simon J. Hubbard, Stephen G. Oliver, Nicholas J. Talbot posted to analysis comparative_genomics fungi genome phylogenomics by stajich on 2008-08-16 00:49:43 as along with 3 people and 1 group nlapalu bcondon GustavoLacerda Mycology
	Impact of whole genome amplification on analysis of copy number variants. [My Copy] Nucleic acids research, Vol. 36, No. 13. (August 2008) by T. J. Pugh, A. D. Delaney, N. Farnoud, et al.S. Flibotte, M. Griffith, H. I. Li, H. Qian, P. Farinha, R. D. Gascoyne, M. A. Marra posted to amplification copy_number_variation genome by stajich on 2008-07-30 17:56:53 as along with 2 people and 1 group nuin guhjy Mycology
	The asexual yeast Candida glabrata maintains distinct a and alpha haploid mating types. [My Copy] Eukaryotic cell, Vol. 7, No. 5. (May 2008), pp. 848-858. by H. Muller, C. Hennequin, J. Gallaud, B. Dujon, C. Fairhead posted to candida fungi genome mating_genes mating_type saccharomyces by stajich on 2008-07-21 04:13:59 as along with 1 group Mycology
	The multiple gene duplication problem revisited [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i132-138. by Mukul S. Bansal, Oliver Eulenstein posted to bioinformatics gene_duplication genome methods by stajich on 2008-07-07 03:37:26 as along with 6 people and 1 group wiedenhoeft anazhu86 thegoose2 druvus bpcusack tharris Mycology
	Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities [My Copy] BMC Genomics, Vol. 9 (29 April 2008), 200. by Bryony A. P. Williams, Renny C. H. Lee, James J. Becnel, Louis M. Weiss, Naomi M. Fast, Patrick J. Keeling posted to comparative_genomics genome microsporidia by stajich on 2008-07-07 03:36:49 as along with 1 group Mycology
	Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History. [My Copy] PLoS genetics, Vol. 3, No. 7. (20 July 2007) by Fusheng Wei, Ed Coe, William Nelson, et al.Arvind K K. Bharti, Fred Engler, Ed Butler, Hyeran Kim, Jose Luis L. Goicoechea, Mingsheng Chen, Seunghee Lee, Galina Fuks, Hector Sanchez-Villeda, Steven Schroeder, Zhiwei Fang, Michael McMullen, Georgia Davis, John E E. Bowers, Andrew H H. Paterson, Mary Schaeffer, Jack Gardiner, Karen Cone, Joachim Messing, Carol Soderlund, Rod A A. Wing posted to genome genome_evolution maize synteny by stajich on 2008-06-09 05:37:06 as along with 1 person and 1 group kengg Mycology
	The new paradigm of flow cell sequencing. [My Copy] Genome research, Vol. 18, No. 6. (1 June 2008), pp. 839-846. by R. A. Holt, S. J. Jones posted to 454 genome illumina nextgensequencing sequencing solexa by stajich on 2008-06-02 20:17:41 as along with 17 people and 1 group mtagaya thegoose2 idoerg treangen druvus kintoki tmmurali reyez lp2 GustavoLacerda tharris balicea caseybrown dchughes hpaces serdarbozdag jfr Mycology
	Genome Analysis of the Unicellular Green Alga Chlamydomonas reinhardtii Indicates an Ancient Evolutionary Origin for Key Pattern Recognition and Cell-Signaling Protein Families [My Copy] Genetics, Vol. 179, No. 1. (1 May 2008), pp. 193-197. by Glen L. Wheeler, Diego Miranda-Saavedra, Geoffrey J. Barton posted to chlamydomonas evolution gene_family genome genome_evolution signaling by stajich on 2008-05-26 16:51:35 as along with 1 person and 1 group cmzmasek Mycology
	annot8r: rapid assignment of GO, EC and KEGG annotations [My Copy] BMC Bioinformatics, Vol. 9 (09 April 2008), 180. by Ralf Schmid, Mark L. Blaxter posted to annotation est genome genome_annotation by stajich on 2008-05-17 02:19:11 as along with 7 people and 1 group Thaverkamp coela JeremyZucker natstreet druvus renatomilani guhjy Mycology
	The genome sequence of the model ascomycete fungus Podospora anserina [My Copy] Genome Biology, Vol. 9 (06 May 2008), R77. by Eric Espagne, Olivier Lespinet, Fabienne Malagnac, et al.Corinne Da Silva, Olivier Jaillon, Betina M. Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald P. de Vries, Evy Battaglia, Pedro M. Coutinho, Etienne G. J. Danchin, Bernard Henrissat, Riyad E. L. Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole H. Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar posted to genome genome_paper podospora by stajich on 2008-05-12 00:48:27 as along with 2 people and 1 group GustavoLacerda jamselem Mycology
	Genome sequences of the honey bee pathogens Paenibacillus larvae and Ascosphaera apis [My Copy] Insect Molecular Biology, Vol. 15, No. 5. (October 2006), pp. 715-718. by X. Qin, J. D. Evans, K. A. Aronstein, K. D. Murray, G. M. Weinstock posted to ascosphaera coccipaper genome paenibacillus by stajich on 2008-04-19 21:26:14 as along with 1 group Mycology
	The genome of the brown alga Ectocarpus siliculosus contains a series of viral DNA pieces, suggesting an ancient association with large dsDNA viruses [My Copy] BMC Evolutionary Biology, Vol. 8 (12 April 2008), 110. by Nicolas Delaroque, Wilhelm Boland posted to algae comparative comparative_genomics genome virus by stajich on 2008-04-15 06:20:29 as along with 1 group Mycology
	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 219-232. by A. Stark, M. F. Lin, P. Kheradpour, et al.J. S. Pedersen, L. Parts, J. W. Carlson, M. A. Crosby, M. D. Rasmussen, S. Roy, A. N. Deoras, J. G. Ruby, J. Brennecke, , , E. Hodges, A. S. Hinrichs, A. Caspi, B. Paten, S. W. Park, M. V. Han, M. L. Maeder, B. J. Polansky, B. E. Robson, S. Aerts, J. van Helden, B. Hassan, D. G. Gilbert, D. A. Eastman, M. Rice, M. Weir, M. W. Hahn, Y. Park, C. N. Dewey, L. Pachter, W. J. Kent, D. Haussler, E. C. Lai, D. P. Bartel, G. J. Hannon, T. C. Kaufman, M. B. Eisen, A. G. Clark, D. Smith, S. E. Celniker, W. M. Gelbart, M. Kellis posted to comparative_genomics drosophila genome genome_paper sequencing by stajich on 2008-04-05 19:56:58 as along with 21 people and 3 groups heliopais anphony kieran101 Neeperando pradiptaray rouault druvus operon tmmurali djkt timflutre lp2 cabbagezs nklee hpaces roys caseybrown gjuggler shuzhens PetrovLab cisevol microRNA Mycology Drosophila-Genetics-Genomics-2008
	Hawkeye: an interactive visual analytics tool for genome assemblies [My Copy] Genome Biology, Vol. 8, No. 3. (09 March 2007), R34. by Michael Schatz, Adam Phillippy, Ben Shneiderman, Steven Salzberg posted to assembly bioinformatics comparison genome by stajich on 2008-03-23 21:27:35 as along with 11 people and 2 groups darian n00c joule Thaverkamp hpaces orzenil GustavoLacerda natstreet druvus azazello Neeperando Mycology gatech-compgenomics
	Beyond Mfold: recent advances in RNA bioinformatics. [My Copy] Journal of biotechnology, Vol. 124, No. 1. (25 June 2006), pp. 41-55. by Jens Reeder, Matthias Höchsmann, Marc Rehmsmeier, Björn Voss, Robert Giegerich posted to analysis gene_prediction genome noncoding noncoding_rna rna rna_gene software by stajich on 2008-03-10 23:24:36 as along with 20 people and 4 groups tonamswish heliopais daforerog danaiancu rb_india ellarond GustavoLacerda hrogers marcius eckart_bindewald tardigrade andersbj arcticrasta mtagaya condon Hosna Eonwe cthachuk physics reyez microRNA beta BioinfoCIPF SGU-CIPF
	Insights from Sequencing Fungal and Oomycete Genomes: What Can We Learn about Plant Disease and the Evolution of Pathogenicity? [My Copy] Plant Cell, Vol. 19, No. 11. (1 November 2007), pp. 3318-3326. by Darren M. Soanes, Thomas A. Richards, Nicholas J. Talbot posted to genome oomycete pathogen plantpathogen review fungi by stajich on 2008-02-08 21:01:28 as along with 1 person and 1 group GustavoLacerda Mycology
	The genome sequence of the rice blast fungus Magnaporthe grisea [My Copy] Nature, Vol. 434, No. 7036., pp. 980-986. by Ralph A. Dean, Nicholas J. Talbot, Daniel J. Ebbole, et al.Mark L. Farman, Thomas K. Mitchell, Marc J. Orbach, Michael Thon, Resham Kulkarni, Jin-Rong Xu, Huaqin Pan, Nick D. Read, Yong-Hwan Lee, Ignazio Carbone, Doug Brown, Yeon Y. Oh, Nicole Donofrio, Jun S. Jeong, Darren M. Soanes, Slavica Djonovic, Elena Kolomiets, Cathryn Rehmeyer, Weixi Li, Michael Harding, Soonok Kim, Marc-Henri Lebrun, Heidi Bohnert, Sean Coughlan, Jonathan Butler, Sarah Calvo, Li-Jun Ma, Robert Nicol, Seth Purcell, Chad Nusbaum, James E. Galagan, Bruce W. Birren posted to fungi genome genome_paper magnaporthe sequencing by stajich on 2007-12-12 19:24:27 as along with 4 people and 1 group GustavoLacerda alephXV jwortman alexl Mycology
	The UniMarker (UM) method for synteny mapping of large genomes. [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3156-3165. by B. Y. Liao, Y. J. Chang, J. M. Ho, M. J. Hwang posted to evolution genome synteny by stajich on 2007-12-02 23:47:49 as along with 1 person and 1 group indigoviolet EisenLab
	Automatic genome-wide reconstruction of phylogenetic gene trees [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i549-558. by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev posted to evolution genome phylogenetics synteny yeast by stajich on 2007-12-02 23:47:19 as along with 7 people and 1 group djkt biomcgary thegoose2 gjuggler shigepong seitentaisei tharris Mycology
	Dothideomycete Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum. [My Copy] Plant Cell (16 November 2007) by James K K. Hane, Rohan G T G. Lowe, Peter S S. Solomon, et al.Kar-Chun C. Tan, Conrad L L. Schoch, Joseph W W. Spatafora, Pedro W W. Crous, Chinappa Kodira, Bruce W W. Birren, James E E. Galagan, Stefano F F F. Torriani, Bruce A A. McDonald, Richard P P. Oliver posted to dothideomycete fungi genome stagonospora by stajich on 2007-11-26 22:32:45 as along with 1 group Mycology
	High mobility group (HMG-box) genes in the honeybee fungal pathogen Ascosphaera apis [My Copy] Mycologia, Vol. 99, No. 4. (1 July 2007), pp. 553-561. by K. A. Aronstein, K. D. Murray, J. H. de Leon, X. Qin, G. M. Weinstock posted to ascosphaera genome mating_genes by stajich on 2007-11-20 19:26:44 as along with 1 group Mycology
	Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18730-18735. by Jun Xu, Charles W. Saunders, Ping Hu, et al.Raymond A. Grant, Teun Boekhout, Eiko E. Kuramae, James W. Kronstad, Yvonne M. DeAngelis, Nancy L. Reeder, Kevin R. Johnstone, Meredith Leland, Angela M. Fieno, William M. Begley, Yiping Sun, Martin P. Lacey, Tanuja Chaudhary, Thomas Keough, Lien Chu, Russell Sears, Bo Yuan, Thomas L. Dawson posted to basidiomycota dandruff fungi genome by stajich on 2007-11-13 19:15:18 as along with 1 person nlapalu
	Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi [My Copy] Genome Res. (5 November 2007), gr.6531807. by Michael J. Cornell, Intikhab Alam, Darren M. Soanes, et al.Han M. Wong, Cornelia Hedeler, Norman W. Paton, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver posted to fungi genome by stajich on 2007-11-12 17:47:10 as along with 6 people and 1 group grahamc GustavoLacerda nklee idonaldson seitentaisei alanrw Mycology
	Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis [My Copy] Nature Biotechnology, Vol. 25, No. 3. (04 March 2007), pp. 319-326. by Thomas W. Jeffries, Igor V. Grigoriev, Jane Grimwood, et al.José M. Laplaza, Andrea Aerts, Asaf Salamov, Jeremy Schmutz, Erika Lindquist, Paramvir Dehal, Harris Shapiro, Yong-Su Jin, Volkmar Passoth, Paul M. Richardson posted to genome pichia by stajich on 2007-10-18 00:37:50 as

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Result page: 1 2 Next

fungi	218
evolution	112
methods	68
multicellular	66
bioinformatics	61
genome	61
aspergillus	58
yeast	57
saccharomyces	45
neurospora	41
intron	40
cell_wall	39
phylogenetics	39
development	35
mirna	35
molecular_evolution	31
noncoding_rna	30
drosophila	29
smallrna	29
comparative_genomics	28
cryptococcus	28
phylogeny	28
basidiomycota	27
gene_expression	26
genome_evolution	25
pathogen	24
population_genomics	24
rnai	23
nextgensequencing	22
population_genetics	22
sequencing	21
sexual_development	21
phylogenomics	20
speciation	20
annotation	18
cell_surface	18
splicing	18
alternative_splicing	17
coccipaper	17
filamentous	17
rna_silencing	17
solexa	17
genome_paper	16
metazoa	16
positive_selection	16
bacteria	15
computational_biology	14
duplication	14
gene_family	13
intron_evolution	13
plant	13
alignment	12
assembly	12
gene_duplication	12
genome_annotation	12
human	12
intron_loss	12
meiosis	12
plantpathogen	12
smallrna_paper	12
coccidioides	11
gene_tree	11
genomics	11
pombe	11
shortread	11
synteny	11
transcription	11
virus	11
antifungal	10
coprinus	10
eukaryota	10
gene	10
horizontal_gene_transfer	10
mating_genes	10
mushroom	10
regulation	10
rna	10
selection	10
chytrid	9
gene_prediction	9
intron_gain	9
mating_type	9
selection_test	9
zygomycota	9
ascomycota	8
beta-glucan	8
caenorhabditis	8
candida	8
database	8
dictyostelium	8
gene_finding	8
recombination	8
repeats	8
silencing	8
species_tree	8
batrachochytrium	7
binding_site	7
cellular_signaling	7
cellulose_synthase	7
evodevo	7
halophile	7
halophilic	7
hypersaline	7
light_response	7
marine	7
metagenomics	7
microarray	7
mycovirus	7
noncoding	7
oomycete	7
plants	7
signaling	7
software	7
symbiosis	7
virulence	7
virulence_factor	7
adhesion	6
ant	6
chipseq	6
coevolution	6
est	6
gene_regulation	6
hydrophobin	6
mrna	6
mutation_rate	6
mycorrhizal	6
polymorphism	6
sex_chromosome	6
snp	6
spore	6
toxin	6
transcription_factor	6
ustilago	6
volvox	6
codon_bias	5
codon_model	5
ecology	5
environmental_microbiology	5
meiotic_silencing	5
metazoan	5
microsporidia	5
mutalism	5
p450	5
paml	5
penicillium	5
posttranscriptional	5
prediction	5
protein	5
protein_evolution	5
resequencing	5
review	5
rhizopus	5
rip	5
rna_gene	5
rnaseq	5
secondary_metabolite	5
snorna	5
statistics	5
stress_response	5
transposable_elements	5
transposon	5
adaptation	4
animal	4
antisense_transcription	4
asexual_development	4
blastomyces	4
chitin	4
cis-regulatory	4
comparative	4
cryptic_species	4
dimorphism	4
dna	4
dsrna	4
enzyme	4
flagella	4
gene_silencing	4
glucan	4
histoplasma	4
hyphal_growth	4
infection	4
infectious_disease	4
mapping	4
microbial	4
moniliophthora	4
morphology	4
msud	4
nematode	4
orthology	4
phanerochaete_chrysosporium	4
pheremone	4
phylogenetic_marker_selection	4
podospora	4
proteomics	4
psychrophile	4
schizophyllum	4
secreted	4
sequence_analysis	4
simulation	4
sirna	4
smut	4
sugar	4
systematics	4
transcriptional_regulation	4
tree	4
tree_reconcilation	4
whole_genome	4
454	3
adaptive	3
amanita	3
anopheles	3
apicomplexa	3
arabidopsis	3
argonaute	3
ascospore	3
biogenesis	3
biosynthesis	3
browser	3
cellulase	3
centromere	3
chytridgenomepaper	3
circadian	3
combiners	3
conidial	3
cooperation	3
copy_number_variation	3
crystalstructure	3
defense	3
dicer	3
disease	3
diversity	3
domestication	3
drug_resistance	3
evolutionary_theory	3
expansion	3
extremophile	3
frog	3
fungus	3
fusarium	3
genotype	3
hyphal	3
illumina	3
magnaporthe	3
mammal	3
microbotryum	3
mosquito	3
motif	3
mucor	3
multiple_sequence_alignment	3
network	3
neurospora_tetrasperma	3
nmd	3
nuclear_export	3
opisthokont	3
paralogs	3
photoreceptor	3
phytophthora	3
plant-microbe	3
promotor	3
protein_localization	3
protist	3
rdna	3
regulatory_evolution	3
resistance	3
riboswitch	3
rnaworld	3
septin	3
thermophile	3
transporter	3
trichoderma	3
trna	3
variation	3
12flies	2
algae	2
algorithm	2
alpha_amylase	2
analysis	2
antisense	2
apicomplexia	2
apoptosis	2
aquatic	2
array	2
ascosphaera	2
automation	2
bioperl	2
bioremediation	2
blogging	2
cacao	2
cellulose	2
cell_wall_genes	2
cell_wall_integrity	2
centrosome	2
character_evolution	2
chitin_synthase	2
chlamydomonas	2
coalescent	2
coelomata	2
cold	2
comparison	2
complexity	2
cryphonectria	2
cytochrome	2
divergence_time	2
dothideomycete	2
ecdysozoa	2
ectomycorrhizal	2
endophyte	2
expression	2
fks1	2
floculation	2
folding	2
fractal	2
functional_prediction	2
gene_network	2
genome_duplication	2
germination	2
glucanase	2
g-proteins	2
growth	2
heterokaryon	2
het_loci	2
hmm	2
honeybee	2
htg	2
imaging	2
infrastructure	2
iron	2
its_sequence	2
keritinophilic	2
laccaria	2
linkage	2
maize	2
mating_systems	2
microscopy	2
mitochondria	2
module	2
moss	2
mycelia	2
mycotoxin	2
natural_selection	2
ncrna	2
neutral	2
news	2
notch	2
nrps	2
nuclear	2
pathway_construction	2
penicillin	2
pezizomycete	2
phanerochaete	2
phenotypic	2
photosynthesis	2
phycomyces	2
phylogenetic_profiling	2
phylogeography	2
pirna	2
primate	2
publishing	2
puccinia	2
qtl	2
rearrangement	2
receptor	2
reconciliation	2
reconstruction	2
retrotransposon	2
ribosomal	2
ribosomes	2
rnasep	2
rotting	2
secretion	2
secretory	2
senescence	2
sexual_selection	2
soil	2
supertree	2
telomerase	2
test	2
transcript	2
translational_control	2
treeoflife	2
utr	2
visualization	2
wheat	2
witchesbroom	2
woroninbody	2
5	1
5prime	1
5s	1
aedes	1
aeriel_hyphae	1
ageing	1
aging	1
agrobacterium	1
airborne	1
allelefreq	1
allergen	1
alpha-glucosidase	1
amino_acid	1
amphibian	1
amplification	1
ancient_dna	1
animal_evolution	1
antagonistic	1
anthocyanin	1
anthrax	1
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arbuscular	1
archea	1
armillaria	1
ashbya	1
association_study	1
autolysis	1
azole	1
baisidiomycota	1
bait	1
balancing_selection	1
barcode	1
basal_body	1
bdpearl	1
beetle	1
behavior	1
biodiversity	1
biofilm	1
biofuel	1
biogeography	1
biotroph	1
birthdeath	1
boletales	1
briggsae	1
bwa	1
c4	1
calcium_levels	1
cancer	1
canine	1
carbon_footprint	1
carnivorous	1
caspofungin	1
ccd	1
cell_surface_interactions	1
cellulose_binding_domain	1
cellulose_degradation	1
cell_wall_components	1
cell_wall_proteins	1
cgh	1
chemical_genomics	1
chemotaxis	1
chitosan	1
chlamy	1
chocolate	1
chordate	1
chromatin	1
chromosome	1
cilia	1
citrus	1
cladosporium	1
classification	1
claviceps	1
climate_change	1
clinal	1
clinical	1
clock	1
cnidaria	1
coal	1
coccipopgen	1
cocoa	1
co-evolution	1
colony	1
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condida	1
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coral	1
corrie	1
cospeciation	1
cpg	1
crinkler	1
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design	1
diatom	1
diesel	1
dispersal	1
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dobzhansky-muller	1
dollo	1
ecological_speciation	1
editorial	1
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engineering	1
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ensembl	1
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environment	1
epistasis	1
eqtl	1
ergosterol	1
ethnobotany	1
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evogene	1
evolutionary_biology	1
excavata	1
experimental_evolution	1
export	1
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farming	1
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fluconazole	1
fly	1
fossil	1
fruitingbody	1
fuel	1
funding	1
fungicide	1
gene_ontology	1
gene_structure	1
genetic_code	1
genetic_incompatibility	1
genetic_screen	1
gh6	1
gpcr	1
g_protein	1
graphics	1
gui	1
h1n1	1
h3k9	1
heat_shock	1
herbarium	1
heterobasidion	1
heterochromatin	1
heterotachy	1
heterozygosity	1
hill_roberts	1
histone	1
hiv	1
homoplasy	1
hortaea	1
hot_spring	1
hybrid_incompatibility	1
hybridization	1
hydra	1
hydrogenase	1
hyphal_fusion	1
imprinting	1
incompatibility	1
indels	1
index_of_association	1
influenza	1
informatics	1
insect	1
interfaction	1
intron_sliding	1
invasive	1
invasive_species	1
jakobid	1
journal	1
keratin	1
kinase	1
knock-out	1
labeling	1
lab_library	1
lab_tools	1
laea	1
largest_organism	1
lateral_gene_transfer	1
leishmania	1
library	1
lichen	1
lineage-specific	1
live_imaging	1
ltr	1
luciferase	1
macaque	1
malaria	1
mammalian	1
mammoth	1
mass_spec	1
mcmc	1
medical	1
medical_mycology	1
melanin	1
membrane	1
metabolic_network	1
metalloproteinase	1
method	1
microbiology	1
microbiome	1
missing_words	1
model_system	1
modernsynthesis	1
morphogenesis	1
mouse	1
multicellular_animals	1
multicellularity	1
mutagenesis	1
myosin	1
mytilus	1
myxobacterial	1
necrotroph	1
nitrogen	1
non-self-recognition	1
normalization	1
notch_pathway	1
nucleosome	1
nucleus	1
ocean	1
onygenales	1
opsin	1
orphan	1
oscillator	1
oxidative_stress	1
paenibacillus	1
paracoccidioides	1
parallel	1
parasexual	1
parasite	1
parser	1
parsimony	1
pathogenic_fungi	1
pattern	1
perl	1
peroxidase	1
peroxisomes	1
pgm	1
phagocytosis	1
philosophyofscience	1
phototaxis	1
phylocode	1
phylogenomic	1
phyloinformatics	1
physcomitrella	1
physiology	1
phytochrome	1
phytophthora_infestans	1
pichia	1
piwi	1
pks	1
plant_cell_wall	1
plosone_highlight	1
pneumocystis	1
policy	1
polya	1
populus	1
positive_selecion	1
primer_design	1
prion	1
probabilistic_graph	1
profiling	1
prokaryotes	1
proteases	1
protein_interactions	1
protocols	1
protoplast	1
publication	1
quantitative_genetics	1
r	1
rab	1
rad50	1
randomforest	1
rangequery	1
rat	1
report	1
rna_binding	1
rodent	1
ros	1
rotifer	1
rrna	1
rust	1
rxlr	1
same_sex_mating	1
science	1
scienceblog	1
screen	1
scripts	1
segregation	1
selfing	1
sensing	1
septalplug	1
sequence	1
sesquiterpene	1
sex	1
sexual_recombination	1
simluation	1
site	1
sordaria	1
species	1
species_comparison	1
species-specific	1
spindlepolebody	1
spombe	1
s_pombe	1
sponge	1
sporulation	1
sr	1
ssr	1
stagonospora	1
stonewashed	1
structure	1
substrate	1
subtractive_hybridization	1
sugar_transporter	1
tag	1
target	1
taxonomy	1
tbrucei	1
tetraspannin	1
theory	1
transcription_profiling	1
translation	1
transposase	1
tree_comparison	1
trypanosome	1
turnover	1
tyrosine	1
undergraduate_research	1
uorf	1
validation	1
vegetative_compatibility	1
vertebrate	1
wasp	1
wcc	1
wga	1
wiki	1
word_frequency	1
worm	1
wtf	1
xml	1
yellowstone	1
zoospore	1

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