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stajich's intron [33 articles]

Recent papers added to stajich's library classified by the tag intron. You can also see everyone's intron.
  • Evidence against the energetic cost hypothesis for the short introns in highly expressed genes
    BMC Evolutionary Biology, Vol. 8 (20 May 2008), 154.
    by Yi-Fei Huang, Deng-Ke Niu
    posted to molecular_evolution intron_evolution intron by stajich on 2008-05-27 16:19:13 as ** along with 1 person and 2 groups cisevol Berkeley Mycology BergmanLab
  • Complete mitochondrial genome sequence of the wine yeast Candida zemplinina: intraspecies distribution of a novel group-IIB1 intron with eubacterial affiliations.
    FEMS yeast research, Vol. 8, No. 2. (March 2008), pp. 311-327.
    by PV Pramateftaki, VN Kouvelis, P Lanaridis, MA Typas
    posted to yeast intron evolution candida by stajich on 2008-05-11 23:44:29 as ** along with 1 group Berkeley Mycology
  • Intronic microRNA precursors that bypass Drosha processing
    Nature (24 June 2007)
    by Graham J Ruby, Calvin H Jan, David P Bartel
    posted to intron mirna splicing by stajich on 2008-04-05 19:57:50 as ** along with 5 people and 4 groups ale dpollard gpalidwor andersbj Garamonfok Bioinformatics EisenLab microRNA Berkeley Mycology
  • An early evolutionary origin for the minor spliceosome
    Nature, Vol. 443, No. 7113., pp. 863-866.
    by Anthony G Russell, Michael J Charette, David F Spencer, Michael W Gray
    posted to intron intron_evolution rhizopus splicing by stajich on 2008-03-03 23:43:56 as ** along with 1 group Berkeley Mycology
  • Translational control of intron splicing in eukaryotes
    Nature, Vol. 451, No. 7176. (17 January 2008), pp. 359-362.
    by Olivier Jaillon, Khaled Bouhouche, Jean-Francois Gout, Jean-Marc Aury, Benjamin Noel, Baptiste Saudemont, Mariusz Nowacki, Vincent Serrano, Betina M Porcel, Beatrice Segurens, Anne Le Mouel, Gersende Lepere, Vincent Schachter, Mireille Betermier, Jean Cohen, Patrick Wincker, Linda Sperling, Laurent Duret, Eric Meyer
    posted to intron intron_evolution splicing transcription translational_control by stajich on 2008-01-16 20:58:12 as ** along with 6 people and 1 group zhouyu jonsta247 raistrick gjuggler mclarenv seitentaisei Berkeley Mycology
  • Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA
    Nature, Vol. 451, No. 7174. (3 January 2008), pp. 94-97.
    by Paul J Paukstelis, Jui-Hui Chen, Elaine Chase, Alan M Lambowitz, Barbara L Golden
    posted to intron neurospora rna rnaworld trna by stajich on 2008-01-06 20:05:29 as ** along with 1 person and 1 group sharpton Berkeley Mycology
  • The presence of GC-AG introns in Neurospora crassa and other euascomycetes determined from analyses of complete genomes: implications for automated gene prediction.
    Genomics, Vol. 87, No. 3. (March 2006), pp. 338-347.
    by M Rep, RG Duyvesteijn, L Gale, T Usgaard, BJ Cornelissen, LJ Ma, TJ Ward
    posted to euascomycte fungi intron neurospora splicing by stajich on 2007-12-12 19:23:49 as ** along with 1 group Berkeley Mycology
  • Coevolution of genomic intron number and splice sites.
    Trends Genet, Vol. 23, No. 7. (July 2007), pp. 321-325.
    by M Irimia, D Penny, SW Roy
    posted to evolution intron splicing by stajich on 2007-11-09 05:42:43 as ** along with 4 people and 1 group dpollard GustavoLacerda Manchester seitentaisei EisenLab
  • Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing
    BMC Evolutionary Biology, Vol. 7, No. 1. (2007)
    by Manuel Irimia, Jakob Rukov, David Penny, Scott Roy
    posted to alternative_splicing intron multicellular by stajich on 2007-11-09 05:42:15 as read along with 1 person balicea
  • Genome-wide Analysis of Pre-mRNA Splicing: INTRON FEATURES GOVERN THE REQUIREMENT FOR THE SECOND-STEP FACTOR, Prp17 IN SACCHAROMYCES CEREVISIAE AND SCHIZOSACCHAROMYCES POMBE
    J. Biol. Chem., Vol. 279, No. 50. (10 December 2004), pp. 52437-52446.
    by Aparna K Sapra, Yoav Arava, Piyush Khandelia, Usha Vijayraghavan
    posted to intron mrna yeast by stajich on 2007-11-06 00:56:04 as **
  • Genome-wide identification of spliced introns using a tiling microarray
    Genome Res., Vol. 17, No. 4. (1 April 2007), pp. 503-509.
    by Zhihong Zhang, Jay R Hesselberth, Stanley Fields
    posted to intron microarray saccharomyces by stajich on 2007-10-15 02:01:37 as ** along with 1 person mdimon
  • Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans
    Genome Res., Vol. 17, No. 4. (1 April 2007), pp. 492-502.
    by Quinn M Mitrovich, Brian B Tuch, Christine Guthrie, Alexander D Johnson
    posted to candida intron by stajich on 2007-10-15 02:01:12 as ** along with 1 person wenhan
  • Splicing and the Evolution of Proteins in Mammals
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e14.
    by Joanna L Parmley, Araxi O Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D Hurst
    posted to evolution intron phylogenetics protein protein_evolution alternative_splicing by stajich on 2007-06-27 05:34:01 as ** along with 7 people and 7 groups operon aalibes dpollard dchughes kehan jwestbrook gileswl biodiversity_conservation Bioinformatics EisenLab G4ID King_Lab GrassBase Genetics-of-Gambling
  • The evolution of spliceosomal introns in alveolates.
    Mol Biol Evol, Vol. 24, No. 5. (May 2007), pp. 1093-1096.
    by HD Nguyen, M Yoshihama, N Kenmochi
    posted to evolution intron by stajich on 2007-06-27 05:31:55 as ** along with 1 person and 1 group jwestbrook King_Lab
  • Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.
    Bioinformatics (5 May 2007)
    by Avril Coghlan, Richard Durbin
    posted to bioinformatics gene_finding intron by stajich on 2007-06-14 04:39:24 as **** along with 3 people and 2 groups indigoviolet GustavoLacerda dmc EisenLab Durbin group
  • Very Little Intron Gain in Entamoeba histolytica Genes Laterally Transferred from Prokaryotes
    Molecular Biology and Evolution, Vol. 23, No. 10. (15 October 2006), pp. 1824-1827.
    by Roy, Scott William, Irimia, Manuel, Penny, David
    posted to horizontal_gene_transfer htg intron intron_gain intron_loss lateral_gene_transfer by stajich on 2007-05-29 16:25:46 as **
  • Widespread Intron Loss Suggests Retrotransposon Activity in Ancient Apicomplexans
    Mol Biol Evol (23 May 2007), msm102.
    by Scott W Roy, David Penny
    posted to apicomplexia intron intron_loss retrotransposon by stajich on 2007-05-29 16:25:17 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Smoke Without Fire: Most Reported Cases of Intron Gain in Nematodes Instead Reflect Intron Losses
    Molecular Biology and Evolution, Vol. 23, No. 12. (15 December 2006), pp. 2259-2262.
    by Roy, Scott William, Penny, David
    posted to intron intron_gain intron_loss nematode by stajich on 2007-05-29 16:24:14 as **
  • notes Complex early genes.
    Proc Natl Acad Sci U S A, Vol. 102, No. 6. (8 February 2005), pp. 1986-1991.
    by SW Roy, W Gilbert
    posted to evolution intron intron_loss methods by stajich on 2007-05-22 06:33:07 as read
  • The pattern of intron loss
    PNAS, Vol. 102, No. 3. (18 January 2005), pp. 713-718.
    by Scott W Roy, Walter Gilbert
    posted to evolution intron intron_loss methods by stajich on 2007-05-22 06:32:37 as read along with 1 person zhlei
  • Resolution of a deep animal divergence by the pattern of intron conservation
    PNAS, Vol. 102, No. 12. (22 March 2005), pp. 4403-4408.
    by Scott W Roy, Walter Gilbert
    posted to coelomata ecdysozoa evolution intron by stajich on 2007-05-22 06:31:51 as read
  • Rates of intron loss and gain: Implications for early eukaryotic evolution
    PNAS, Vol. 102, No. 16. (19 April 2005), pp. 5773-5778.
    by Scott W Roy, Walter Gilbert
    posted to evolution intron intron_gain intron_loss by stajich on 2007-05-22 06:30:58 as read
  • The evolution of spliceosomal introns: patterns, puzzles and progress
    Nature Reviews Genetics, Vol. 7, No. 3., pp. 211-221.
    by Scott W Roy, Walter Gilbert
    posted to evolution intron review by stajich on 2007-05-22 06:30:29 as read along with 5 people jonsta247 zhlei eoghanharr tabu byy
  • Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution
    Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1270-1275.
    by Scott W Roy, David Penny
    posted to apicomplexa evolution intron intron_gain intron_loss by stajich on 2007-05-22 06:29:47 as read along with 1 person shung
  • Patterns of Intron Loss and Gain in Plants: Intron LossDominated Evolution and Genome-Wide Comparison of O. sativa and A. thaliana
    Molecular Biology and Evolution, Vol. 24, No. 1. (January 2007), pp. 171-181.
    by Roy, Scott William, Penny, David
    posted to evolution intron plants by stajich on 2007-05-22 06:28:49 as ***
  • A Very High Fraction of Unique Intron Positions in the Intron-rich Diatom Thalassiosira pseudonana Indicates Widespread Intron Gain
    Mol Biol Evol (8 March 2007), msm048.
    by Scott W Roy, David Penny
    posted to diatom evolution intron intron_gain by stajich on 2007-05-22 06:28:31 as **
  • Coevolution of genomic intron number and splice sites
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Manuel Irimia, David Penny, Scott W Roy
    posted to evolution genome_evolution intron splicing by stajich on 2007-05-22 06:27:40 as read along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Evolutionary Conservation of UTR Intron Boundaries in Cryptococcus
    Mol Biol Evol, Vol. 24, No. 5. (1 May 2007), pp. 1140-1148.
    by Scott W Roy, David Penny, Daniel E Neafsey
    posted to cryptococcus evolution intron utr by stajich on 2007-05-22 06:27:29 as read
  • On the Incidence of Intron Loss and Gain in Paralogous Gene Families
    Mol Biol Evol (29 April 2007), msm082.
    by Scott W Roy, David Penny
    posted to evolution intron paralogs by stajich on 2007-05-22 06:26:24 as read along with 2 people and 1 group jwestbrook lilou King_Lab
  • Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans.
    Eukaryot Cell, Vol. 5, No. 5. (May 2006), pp. 789-793.
    by JE Stajich, FS Dietrich
    posted to cryptococcus fungi intron by stajich on 2007-05-22 06:18:15 as read along with 3 people and 3 groups dalloliogm raylim seitentaisei Web2 splicing yeast
  • Transcript Specificity in Yeast Pre-mRNA Splicing Revealed by Mutations in Core Spliceosomal Components
    PLoS Biology, Vol. 5, No. 4. (1 April 2007), e90.
    by Jeffrey A Pleiss, Gregg B Whitworth, Megan Bergkessel, Christine Guthrie
    posted to intron mrna saccharomyces splicing by stajich on 2007-04-24 18:05:20 as **
  • Differential Recruitment of the Splicing Machinery during Transcription Predicts Genome-Wide Patterns of mRNA Splicing
    Molecular Cell, Vol. 24, No. 6. (28 December 2006), pp. 903-915.
    by Michael J Moore, Elissa M Schwartzfarb, Pamela[no-Break Silver, Michael C Yu
    posted to splicing saccharomyces intron by stajich on 2007-01-18 00:57:24 as **
  • A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional.
    Mol Cell, Vol. 24, No. 6. (28 December 2006), pp. 917-929.
    by DF Tardiff, SA Lacadie, M Rosbash
    posted to splicing saccharomyces intron by stajich on 2007-01-18 00:56:20 as **
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