stephenbond's poisson-boltzmann [27 articles] Export Sort

Recent papers added to stephenbond's library classified by the tag poisson-boltzmann. You can also see everyone's poisson-boltzmann.

Hide details

	DIRECT SOLUTION OF THE POISSON EQUATION FOR BIOMOLECULES OF ARBITRARY SHAPE, POLARIZABILITY DENSITY, AND CHARGE DISTRIBUTION [My Copy] Annals of the New York Academy of Sciences, Vol. 303, No. Electrical Properties of Biological Polymers Water and Membranes. (1977), pp. 22-37. by William H. Orttung posted to finite-element-method poisson poisson-boltzmann by stephenbond on 2009-04-03 00:12:42 as
	A smooth permittivity function for Poisson-Boltzmann solvation methods [My Copy] Journal of Computational Chemistry, Vol. 22, No. 6. (2001), pp. 608-640. by J. Andrew Grant, Barry T. Pickup, Anthony Nicholls posted to poisson-boltzmann by stephenbond on 2009-04-02 23:58:51 as along with 4 people nickolay dmitry_s_yershov cen4ik onufriev
	Solvent-accessible surfaces of proteins and nucleic acids [My Copy] Science, Vol. 221, No. 4612. (19 August 1983), pp. 709-713. by M. L. Connolly posted to poisson poisson-boltzmann by stephenbond on 2009-04-02 23:48:08 as along with 2 people flbarroso cen4ik
	A new method for computing the macromolecular electric potential [My Copy] Journal of Molecular Biology, Vol. 186, No. 4. (20 December 1985), pp. 815-820. by R. Zauhar, R. Morgan posted to boundary_element_method boundary_integral_equation poisson-boltzmann by stephenbond on 2009-04-02 23:39:51 as along with 2 people dmitry_s_yershov flbarroso
	Adaptive multilevel finite element solution of the Poisson-Boltzmann equation I. Algorithms and examples [My Copy] Journal of Computational Chemistry, Vol. 21, No. 15. (2000), pp. 1319-1342. by M. Holst, N. Baker, F. Wang posted to finite-element-method multigrid poisson-boltzmann by stephenbond on 2009-04-02 23:33:41 as along with 1 person dmitry_s_yershov
	Adaptive multilevel finite element solution of the Poisson-Boltzmann equation II. Refinement at solvent-accessible surfaces in biomolecular systems [My Copy] Journal of Computational Chemistry, Vol. 21, No. 15. (2000), pp. 1343-1352. by N. Baker, M. Holst, F. Wang posted to finite-element-method multigrid poisson-boltzmann by stephenbond on 2009-04-02 23:30:50 as along with 1 person dmitry_s_yershov
	A combined iterative and boundary-element approach for solution of the nonlinear Poisson-Boltzmann equation [My Copy] Journal of the American Chemical Society, Vol. 114, No. 9. (1 April 1992), pp. 3189-3196. by Y. N. Vorobjev, J. A. Grant, H. A. Scheraga posted to boundary_element_method poisson-boltzmann by stephenbond on 2009-04-02 23:21:43 as along with 1 person dmitry_s_yershov
	A fast adaptive multigrid boundary element method for macromolecular electrostatic computations in a solvent [My Copy] Journal of Computational Chemistry, Vol. 18, No. 4. (1997), pp. 569-583. by Yury N. Vorobjev, Harold A. Scheraga posted to boundary_element_method multigrid poisson poisson-boltzmann by stephenbond on 2009-04-02 23:08:08 as
	Theory of Solutions of Molecules Containing Widely Separated Charges with Special Application to Zwitterions [My Copy] The Journal of Chemical Physics, Vol. 2, No. 7. (1934), pp. 351-361. by John G. Kirkwood posted to generalized_born helmholtz poisson poisson-boltzmann by stephenbond on 2009-04-02 16:39:44 as along with 2 people dmitry_s_yershov mikaellund
	Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures [My Copy] Journal of Computational Chemistry, Vol. 25, No. 2. (30 January 2004), pp. 265-284. by Michael Feig, Alexey Onufriev, Michael S. Lee, Wonpil Im, David A. Case, Charles L. Brooks posted to generalized_born poisson poisson-boltzmann by stephenbond on 2009-03-31 21:26:45 as along with 4 people itolokh allmensch yxue Lombardo_7
	Treatment of charge singularities in implicit solvent models [My Copy] The Journal of Chemical Physics, Vol. 127, No. 11. (2007) by Weihua Geng, Sining Yu, Guowei Wei posted to finite-differences poisson poisson-boltzmann by stephenbond on 2009-03-24 19:19:29 as along with 2 people and 1 group dmitry_s_yershov sobolevnrm baker-group
	Solvation of complex molecules in a polar liquid: An integral equation theory [My Copy] The Journal of Chemical Physics, Vol. 104, No. 21. (1996), pp. 8678-8689. by Dmitrii Beglov, Benoît Roux posted to integral_equations poisson poisson-boltzmann by stephenbond on 2009-03-24 18:50:44 as along with 2 people dmitry_s_yershov onufriev
	Semianalytical treatment of solvation for molecular mechanics and dynamics [My Copy] Journal of the American Chemical Society, Vol. 112, No. 16. (1 August 1990), pp. 6127-6129. by W. Clark Still, Anna Tempczyk, Ronald C. Hawley, Thomas Hendrickson posted to poisson-boltzmann by stephenbond on 2009-03-24 18:45:49 as along with 7 people ckmyo chemrahul82 blackgen Lombardo_7 GermanErlenkamp dmitry_s_yershov dfgreen
	A Poisson--Boltzmann dynamics method with nonperiodic boundary condition [My Copy] The Journal of Chemical Physics, Vol. 119, No. 21. (2003), pp. 11035-11047. by Qiang Lu, Ray Luo posted to finite-differences poisson-boltzmann by stephenbond on 2009-03-24 18:35:49 as along with 1 person dmitry_s_yershov
	Order N algorithm for computation of electrostatic interactions in biomolecular systems [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 51. (19 December 2006), pp. 19314-19319. by Benzhuo Lu, Xiaolin Cheng, Jingfang Huang, J. Andrew Mccammon posted to boundary_integral_equation poisson-boltzmann by stephenbond on 2009-03-24 18:31:16 as along with 5 people flbarroso dmitry_s_yershov eyliu choonpeng qwermish
	Multigrid solution of the Poisson - Boltzmann equation [My Copy] Journal of Computational Chemistry, Vol. 14, No. 1. (1993), pp. 105-113. by Michael Holst, Faisal Saied posted to finite-volume multigrid poisson-boltzmann by stephenbond on 2009-03-24 18:14:52 as along with 1 person dmitry_s_yershov
	Continuum Solvation Model: computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equation [My Copy] Computer Physics Communications, Vol. 111, No. 1-3. (June 1998), pp. 59-75. by W Im, posted to poisson-boltzmann by stephenbond on 2009-03-24 16:58:07 as along with 3 people itolokh dmitry_s_yershov onufriev
	Comparison of implicit solvent models for the simulation of protein-surface interactions [My Copy] Journal of Computational Chemistry, Vol. 27, No. 16. (2006), pp. 1908-1922. by Yu Sun, Robert A. Latour posted to coarse-graining free_energy poisson-boltzmann by stephenbond on 2009-03-24 16:06:56 as along with 2 people dmitry_s_yershov hlwoodcock
	Electrodiffusion: A continuum modeling framework for biomolecular systems with realistic spatiotemporal resolution [My Copy] The Journal of Chemical Physics, Vol. 127, No. 13. (2007) by Benzhuo Lu, Y. C. Zhou, Gary A. Huber, Stephen D. Bond, Michael J. Holst, Andrew J. Mccammon posted to electrodiffusion electrostatics method_of_lines poisson-boltzmann poisson-nernst-planck by stephenbond on 2009-03-24 00:19:28 as along with 1 person and 1 group sobolevnrm baker-group
	Brownian dynamics simulation of diffusion-influenced bimolecular reactions [My Copy] The Journal of Chemical Physics, Vol. 80, No. 4. (1984), pp. 1517-1524. by Scott H. Northrup, Stuart A. Allison, Andrew J. Mccammon posted to brownian_dynamics electrodiffusion electrostatics poisson poisson-boltzmann by stephenbond on 2009-03-23 23:56:44 as along with 3 people choonpeng barry Martin8223
	Implicit solvent models [My Copy] Biophysical Chemistry, Vol. 78, No. 1-2. (5 April 1999), pp. 1-20. by Benoît Roux, Thomas Simonson posted to electrostatics poisson-boltzmann by stephenbond on 2009-03-23 22:43:56 as along with 3 people dmitry_s_yershov Martin8223 qwermish
	Classical electrostatics in biology and chemistry. [My Copy] Science (New York, N.Y.), Vol. 268, No. 5214. (26 May 1995), pp. 1144-1149. by B. Honig, A. Nicholls posted to electrostatics pka poisson poisson-boltzmann by stephenbond on 2009-03-23 22:38:14 as along with 5 people ckmyo onufriev dmitry_s_yershov flbarroso apostola
	Calculation of the electric potential in the active site cleft due to alpha-helix dipoles [My Copy] Journal of Molecular Biology, Vol. 157, No. 4. (June 1982), pp. 671-679. by J. Warwicker, H. C. Watson posted to electrostatics poisson poisson-boltzmann by stephenbond on 2009-03-23 22:20:04 as along with 3 people Scis0000002 dmitry_s_yershov flbarroso
	Electrostatic calculations for an ion channel. I. Energy and potential profiles and interactions between ions [My Copy] Biophysical Journal, Vol. 22, No. 2. (May 1978), pp. 209-219. by D. Levitt posted to electrostatics poisson poisson-boltzmann by stephenbond on 2009-03-23 22:01:43 as along with 1 person dmitry_s_yershov
	Computational Modeling of Three-Dimensional Electrodiffusion in Biological Systems: Application to the Node of Ranvier [My Copy] Vol. 95, No. 6. (15 September 2008), pp. 2624-2635. by Courtney L. Lopreore, Thomas M. Bartol, Jay S. Coggan, et al.Daniel X. Keller, Gina E. Sosinsky, Mark H. Ellisman, Terrence J. Sejnowski posted to electrostatics finite-volume poisson-boltzmann poisson-nernst-planck by stephenbond on 2009-03-23 21:17:13 as
	Implicit Solvent Electrostatics in Biomolecular Simulation [My Copy] New Algorithms for Macromolecular Simulation (2006), pp. 263-295. by Nathan Baker, Donald Bashford, David Case posted to electrostatics poisson-boltzmann by stephenbond on 2009-03-23 18:57:59 as along with 6 people flbarroso Scis0000002 dmitry_s_yershov sunhwan onufriev qwermish
	The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology. [My Copy] Journal of molecular recognition : JMR, Vol. 15, No. 6. (c 2002), pp. 377-392. by F. Fogolari, A. Brigo, H. Molinari posted to electrostatics poisson poisson-boltzmann by stephenbond on 2009-03-23 18:53:39 as along with 3 people Martin8223 flbarroso dmitry_s_yershov

Note: You may cite this page as: http://www.citeulike.org/user/stephenbond/tag/poisson-boltzmann

Sort by:
Order:	Default Ascending Descending
Empty fields:	Default First Last

file-import-09-04-17	51
molecular_dynamics	38
symplectic	28
poisson-boltzmann	27
path_integral	22
constant_temperature	20
geometric_integration	19
free_energy	16
poisson	15
time_reversible	12
thermodynamic_integration	11
electrostatics	11
verlet	10
nose-hoover	10
nose_hoover	9
variable_timestep	9
multigrid	8
finite-element-method	8
monte_carlo	8
constraints	8
backward_error_analysis	8
hard-spheres	8
shake	8
wham	7
fourier	6
nose-poincare	6
umbrella_sampling	6
potential_of_mean_force	5
constant_pressure	5
electrodiffusion	5
adaptive_biasing_force	5
method_of_lines	5
free_energy_perturbation	5
splitting_methods	4
jarzynski	4
ergodicity	4
rigid_bodies	4
mechanics	4
discrete_lagrangian	4
partial_averaging	4
boundary_element_method	4
generalized_born	4
time-transformation	4
histogram	4
hierarchical_basis	3
particle_mesh_ewald	3
numerical_analysis	3
boundary_integral_equation	3
quantum_mechanics	3
brownian_dynamics	3
ewald	3
variational_integrator	3
time_transformation	3
statistical_mechanics	3
coarse-graining	2
feynman-kac	2
explicit	2
neuromuscular	2
partition_of_unity	2
integral_equations	2
poisson-nernst-planck	2
finite-differences	2
sparse	2
n-widths	2
finite-volume	2
transition_path_sampling	2
chaos	2
statistics	2
granular	2
multiscale	2
preconditioning	2
sympletic	2
additive_schwarz	1
nonparametric	1
hydrodynamics	1
pltmg	1
quantum	1
pka	1
continuation_method	1
smoluchowski	1
adaptive_mesh_refinement	1
goemetric_integration	1
fetk	1
bpx	1
integrable_systems	1
geometric_mechanics	1
namd	1
monte-carlo	1
bennett_acceptance_ratio	1
reference_potential	1
bank-holst	1
energy_conserving	1
temperature_accelerated	1
maximum_likelihood	1
lennard-jones	1
discretized_cartesian	1
synapse	1
krylov_methods	1
hyperdynamics	1
ordinary_differential_equations	1
spin_system	1
singular_value_decomposition	1
leapfrog	1
texture	1
laplacian	1
eigenvalues	1
thermodynamics	1
power_series	1
cut-off	1
poincare_transformation	1
averaging	1
long_time_integration	1
wavelet_modified_hierarchical_basis	1
charmm	1
nose_poincare	1
weighted_residual_method	1
multiple_timestepping	1
primitive_algorithm	1
null_space	1
helmholtz	1
nose_hoover_chains	1

stephenbond's poisson-boltzmann [27 articles] Export Sort

stephenbond's tags