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stevanspringer's adaptation [44 articles]

Recent papers added to stevanspringer's library classified by the tag adaptation. You can also see everyone's adaptation.
  • Evolution on a chip : Nature News
    posted to news combinatorial adaptation by stevanspringer on 2008-04-23 22:26:34 as **
  • Perspective: Sign epistasis and genetic constraint on evolutionary trajectories.
    Evolution Int J Org Evolution, Vol. 59, No. 6. (June 2005), pp. 1165-1174.
    by DM Weinreich, RA Watson, L Chao
    posted to adaptation epistasis hypothesis by stevanspringer on 2007-11-14 21:56:31 as **
  • The rank ordering of genotypic fitness values predicts genetic constraint on natural selection on landscapes lacking sign epistasis.
    Genetics, Vol. 171, No. 3. (November 2005), pp. 1397-1405.
    by DM Weinreich
    posted to adaptation epistasis model by stevanspringer on 2007-11-14 21:55:07 as **
  • Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins
    Science, Vol. 312, No. 5770. (7 April 2006), pp. 111-114.
    by Daniel M Weinreich, Nigel F Delaney, Mark A Depristo, Daniel L Hartl
    posted to adaptation bacteria function mutagenesis by stevanspringer on 2007-11-14 21:52:47 as ** along with 14 people and 5 groups bpcusack barry pansapiens imouthesmp dayjm Einat marcius i41m nirfriedman cmm RowanBarrett ramensky Vaquero Ema structural_bioinformatics Bioinformatics FAB-lab BioinfoCIPF SGU-CIPF
  • Empirical fitness landscapes reveal accessible evolutionary paths
    Nature, Vol. 445, No. 7126. (25 January 2007), pp. 383-386.
    by Frank J Poelwijk, Daniel J Kiviet, Daniel M Weinreich, Sander J Tans
    posted to adaptation function mutagenesis by stevanspringer on 2007-11-13 08:45:53 as ** along with 7 people and 1 group bpcusack jjray cckan timflutre grahamc lusk zwang ParkinsonLab_at_MaRS
  • EVOLUTIONARY BIOLOGY: Postgenomic Musings
    Science, Vol. 317, No. 5842. (31 August 2007), pp. 1172-1173.
    by Massimo Pigliucci
    posted to adaptation genome phenotype summary by stevanspringer on 2007-08-31 18:53:25 as ** along with 1 group FAB-lab
  • Selection and evolution of enzymes from a partially randomized non-catalytic scaffold
    Nature, Vol. 448, No. 7155., pp. 828-831.
    by Burckhard Seelig, Jack W Szostak
    posted to adaptation combinatorial protein_structure by stevanspringer on 2007-08-27 22:54:20 as ** along with 3 people and 2 groups aheilbut dpollard zwang EisenLab FAB-lab
  • THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION
    Evolution, Vol. 61, No. 5. (2007), pp. 995-1016.
    by Hopi E Hoekstra, Jerry A Coyne
    posted to adaptation review by stevanspringer on 2007-05-18 06:40:49 as ** along with 9 people and 2 groups kndiaye mjoach mcphee dpollard balicea TaqSys epigenetics jayster4 mimulus_99 EisenLab FAB-lab
  • Molecular Evolution Over the Mutational Landscape
    Evolution, Vol. 38, No. 5. (1984), pp. 1116-1129.
    by John H Gillespie
    posted to adaptation model population_genetics by stevanspringer on 2007-04-04 20:07:18 as ** along with 1 group FAB-lab
  • The relationship between the pleiotropic phenotypic effects of a mutation fixed by selection
    Heredity, Vol. aop, No. current.
    by CK Griswold,
    posted to adaptation model mutation pleiotropy selection by stevanspringer on 2007-04-03 20:42:04 as ** along with 1 group FAB-lab
  • How to Carry Out the Adaptationist Program?
    The American Naturalist, Vol. 121, No. 3. (1983), pp. 324-334.
    by Ernst Mayr
    posted to adaptation hypothesis review by stevanspringer on 2007-03-15 19:46:00 as ** along with 1 group FAB-lab
  • The genomic rate of adaptive evolution
    Trends in Ecology & Evolution, Vol. 21, No. 10. (October 2006), pp. 569-575.
    by Adam Eyre-Walker
    posted to adaptation genome population_genetics by stevanspringer on 2007-02-23 23:18:10 as ** along with 3 people and 3 groups aprasad dchughes Garamonfok FAB-lab G4ID Genetics-of-Gambling
  • Evolutionary biology. The problem of variation.
    Nature, Vol. 408, No. 6812. (30 November 2000)
    by DL Stern
    posted to summary phenotype disease development adaptation by stevanspringer on 2007-02-05 18:32:01 as ** along with 1 group FAB-lab
  • Evolutionary developmental biology and the problem of variation.
    Evolution Int J Org Evolution, Vol. 54, No. 4. (August 2000), pp. 1079-1091.
    by DL Stern
    posted to summary phenotype function development adaptation by stevanspringer on 2007-02-05 18:27:45 as ** along with 1 person and 1 group emptyhb FAB-lab
  • HIV-1 Protease Catalytic Efficiency Effects Caused by Random Single Amino Acid Substitutions
    Mol Biol Evol, Vol. 24, No. 2. (1 February 2007), pp. 382-387.
    by Mariona Parera, Guerau Fernandez, Bonaventura Clotet, Miguel A Martinez
    posted to adaptation function mutagenesis phenotype by stevanspringer on 2007-02-02 19:48:44 as ** along with 1 group FAB-lab
  • The Distribution of Beneficial Mutant Effects Under Strong Selection
    Genetics, Vol. 174, No. 4. (1 December 2006), pp. 2071-2079.
    by Rowan D Barrett, Leithen K M'gonigle, Sarah P Otto
    posted to adaptation model mutation by stevanspringer on 2006-12-21 00:32:13 as ** along with 1 group FAB-lab
  • When less is more: gene loss as an engine of evolutionary change.
    Am J Hum Genet, Vol. 64, No. 1. (January 1999), pp. 18-23.
    by MV Olson
    posted to adaptation hypothesis by stevanspringer on 2006-09-28 16:27:08 as ** along with 3 people and 1 group bpcusack operon djkt FAB-lab
  • Evolutionary biology: The geometry of adaptation
    Nature, Vol. 395, No. 6704. (22 October 1998), pp. 751-752.
    by Nick Barton
    posted to adaptation model by stevanspringer on 2006-05-03 23:52:41 as ** along with 1 group FAB-lab
  • Mutation Rate and the Cost of Complexity
    Mol Biol Evol, Vol. 23, No. 5. (1 May 2006), pp. 957-963.
    by Ralph Haygood
    posted to adaptation mutation by stevanspringer on 2006-04-28 18:52:38 as ** along with 1 group FAB-lab
  • The Population Genetics of Adaptation: The Distribution of Factors Fixed during Adaptive Evolution
    Evolution, Vol. 52, No. 4. (1998), pp. 935-949.
    by Allen H Orr
    posted to adaptation hypothesis by stevanspringer on 2006-04-25 21:52:49 as ** along with 4 people and 1 group shoshin ryang balicea cmm FAB-lab
  • Adaptation and the cost of complexity.
    Evolution Int J Org Evolution, Vol. 54, No. 1. (February 2000), pp. 13-20.
    by HA Orr
    posted to adaptation hypothesis by stevanspringer on 2006-04-25 01:07:21 as ** along with 2 people and 2 groups ryang VRadenovic FAB-lab DSTO-CAS
  • The population genetics of adaptation: the adaptation of DNA sequences.
    Evolution Int J Org Evolution, Vol. 56, No. 7. (July 2002), pp. 1317-1330.
    by HA Orr
    posted to adaptation hypothesis by stevanspringer on 2006-04-25 01:04:53 as ** along with 1 person and 1 group ryang FAB-lab
  • Theories of adaptation: what they do and don't say.
    Genetica, Vol. 123, No. 1-2. (February 2005), pp. 3-13.
    by HA Orr
    posted to adaptation hypothesis model by stevanspringer on 2006-03-11 01:00:56 as ** along with 3 people and 2 groups ryang cmm cwbrown EisenLab FAB-lab
  • Genetic assimilation and a possible evolutionary paradox: can macroevolution sometimes be so fast as to pass us by?
    Evolution Int J Org Evolution, Vol. 57, No. 7. (July 2003), pp. 1455-1464.
    by M Pigliucci, CJ Murren
    posted to adaptation plasticity by stevanspringer on 2006-03-01 07:45:39 as ** along with 2 people and 1 group rklancer pat FAB-lab
  • Dynamic patterns of adaptive radiation.
    Proc Natl Acad Sci U S A, Vol. 102, No. 50. (5 December 2005), pp. 18040-18045.
    by Sergey Gavrilets, Aaron Vose
    posted to adaptation ecology model speciation by stevanspringer on 2006-02-21 05:41:58 as ** along with 2 people and 2 groups marimo cmm MathBio FAB-lab
  • The Genetics of Adaptation: A Reassessment
    The American Naturalist, Vol. 140, No. 5. (1992), pp. 725-742.
    by HA Orr, Jerry A Coyne
    posted to adaptation hypothesis review by stevanspringer on 2006-02-01 01:57:17 as ** along with 1 group FAB-lab
  • Two steps forward, one step back: the pleiotropic effects of favoured alleles.
    Proc Biol Sci, Vol. 271, No. 1540. (7 April 2004), pp. 705-714.
    by SP Otto
    posted to adaptation hypothesis pleiotropy by stevanspringer on 2005-11-17 21:54:31 as ** along with 1 person and 1 group balicea FAB-lab
  • Selectionism and Neutralism in Molecular Evolution
    Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2318-2342.
    by Masatoshi Nei
    posted to adaptation duplication hypothesis phenotype review by stevanspringer on 2005-11-11 23:14:59 as ** along with 7 people and 2 groups operon akifumi penka BioNica timflutre ankur_iitg ArtemPankin Nie FAB-lab
  • Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain.
    Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 2832-2837.
    by SL Sawyer, LI Wu, M Emerman, HS Malik
    posted to adaptation function immunity by stevanspringer on 2005-10-26 05:50:31 as ** along with 4 people and 2 groups bpcusack macowell bpb xwbcn FAB-lab BUiGEM
  • The genetics of adaptation: the roles of pleiotropy, stabilizing selection and drift in shaping the distribution of bidirectional fixed mutational effects.
    Genetics, Vol. 165, No. 4. (December 2003), pp. 2181-2192.
    by CK Griswold, MC Whitlock
    posted to adaptation model by stevanspringer on 2005-10-10 20:50:46 as ** along with 1 group FAB-lab
  • The distribution of fitness effects among beneficial mutations.
    Genetics, Vol. 163, No. 4. (April 2003), pp. 1519-1526.
    by HA Orr
    posted to adaptation model by stevanspringer on 2005-10-10 20:49:16 as ** along with 1 person and 1 group ryang FAB-lab
  • The distribution of fitness effects among beneficial mutations in Fisher's geometric model of adaptation.
    J Theor Biol (27 June 2005)
    by H Allen A Orr
    posted to adaptation model by stevanspringer on 2005-10-10 20:48:04 as ** along with 2 people and 1 group ryang darbuthnott FAB-lab
  • The Probability of Paralell Evolution
    Evolution, Vol. 59, No. 1. (January 2005), pp. 216-220.
    by HA Orr
    posted to adaptation model paralell by stevanspringer on 2005-10-04 19:24:50 as ** along with 1 group FAB-lab
  • The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme.
    Proc R Soc Lond B Biol Sci, Vol. 205, No. 1161. (21 September 1979), pp. 581-598.
    by SJ Gould, RC Lewontin
    posted to adaptation hypothesis by stevanspringer on 2005-09-30 18:30:59 as ** along with 1 person and 1 group bayesian FAB-lab
  • Distributed robustness versus redundancy as causes of mutational robustness.
    Bioessays, Vol. 27, No. 2. (February 2005), pp. 176-188.
    by A Wagner
    posted to adaptation evolvability hypothesis by stevanspringer on 2005-09-23 19:33:23 as ** along with 1 group FAB-lab
  • 20 Questions on Adaptive Dynamics
    Journal of Evolutionary Biology, Vol. 18, No. 5. (September 2005), pp. 1139-1154.
    by D Waxman, S Gavrilets
    posted to adaptation model review by stevanspringer on 2005-08-31 22:46:14 as ** along with 4 people and 2 groups friendpine ryang nathanielvirgo Koh FAB-lab ikeg-lab
  • An adaptive radiation model for the origin of new gene functions
    Nature Genetics, Vol. 37, No. 6. (26 May 2005), pp. 573-578.
    by Pilar P Francino
    posted to adaptation duplication hypothesis by stevanspringer on 2005-06-09 01:37:22 as ** along with 3 people and 1 group bpcusack tmmurali imouthesmp FAB-lab
  • A minimum on the mean number of steps taken in adaptive walks.
    J Theor Biol, Vol. 220, No. 2. (21 January 2003), pp. 241-247.
    by HA Orr
    posted to adaptation model by stevanspringer on 2005-05-20 02:31:58 as ** along with 1 person and 1 group ryang FAB-lab
  • The power of phylogenetic comparison in revealing protein function.
    Proc Natl Acad Sci U S A (22 February 2005)
    by Ziheng Yang
    posted to adaptation function summary by stevanspringer on 2005-05-20 02:18:00 as ** along with 5 people and 1 group bpcusack mdimmic bpb BioNica tale FAB-lab
  • A simple stochastic gene substitution model
    Theoretical Population Biology, Vol. 23, No. 2. (April 1983), pp. 202-215.
    by John H Gillespie
    posted to adaptation model by stevanspringer on 2005-05-04 20:56:08 as ** along with 1 group FAB-lab
  • The genetic theory of adaptation: a brief history
    Nature Reviews Genetics, Vol. 6, No. 2. (01 February 2005), pp. 119-127.
    by Allen A Orr
    posted to adaptation review by stevanspringer on 2005-05-04 20:50:08 as ** along with 4 people and 1 group ryang Chue timflutre timothee FAB-lab
  • Adaptive evolution of genes and gene families
    Current Opinion in Genetics & Development, Vol. 13, No. 6. (December 2003), pp. 617-622.
    by Willie J Swanson
    posted to adaptation reproduction review selection by stevanspringer on 2005-04-13 07:11:10 as ** along with 1 group FAB-lab
  • Evolutionary diversification of TTX-resistant sodium channels in a predator-prey interaction
    Nature, Vol. 434, No. 7034. (07 April 2005), pp. 759-763.
    by Shana L Geffeney, Esther Fujimoto, Edmund Brodie, Edmund Brodie, Peter C Ruben
    posted to adaptation coevolution by stevanspringer on 2005-04-08 00:06:01 as ** along with 1 person and 1 group cjeans FAB-lab
  • Haldane's sieve and adaptation from the standing genetic variation.
    Genetics, Vol. 157, No. 2. (February 2001), pp. 875-884.
    by HA Orr, AJ Betancourt
    posted to adaptation model by stevanspringer on 2005-03-08 19:19:39 as ** along with 1 group FAB-lab
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