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stsaft's dna [79 articles]

Recent papers added to stsaft's library classified by the tag dna. You can also see everyone's dna.
  • Reducing tile complexity for self-assembly through temperature programming
    (2006), pp. 571-580.
    by Ming-Yang Kao, Robert Schweller
    posted to dna self-assembly by stsaft on 2008-06-09 04:11:05 as **
  • Accurate multiplex gene synthesis from programmable DNA microchips
    Nature, Vol. 432, No. 7020. (23 December 2004), pp. 1050-1054.
    by Jingdong Tian, Hui Gong, Nijing Sheng, Xiaochuan Zhou, Erdogan Gulari, Xiaolian Gao, George Church
    posted to biology dna microarrays synthesis synthetic templated by stsaft on 2008-06-06 21:11:25 as ** along with 3 people rklancer opheliav mmt
  • DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis.
    Nucleic Acids Res, Vol. 30, No. 10. (15 May 2002)
    by DM Hoover, J Lubkowski
    posted to assembly directed dna evolution gene melting oligo shuffling temperature by stsaft on 2008-06-04 17:54:04 as ** along with 1 person davidng
  • DNA MISMATCH REPAIR: Molecular Mechanisms and Biological Function
    Annual Review of Microbiology, Vol. 57, No. 1. (2003), pp. 579-608.
    by Mark J Schofield, Peggy Hsieh
    posted to dna mismatch repair by stsaft on 2008-06-03 22:43:31 as **
  • On the specificity of DNA-protein interactions.
    Proc Natl Acad Sci U S A, Vol. 83, No. 6. (March 1986), pp. 1608-1612.
    by PH von Hippel, OG Berg
    posted to dna protein simulation thermodynamics by stsaft on 2008-04-22 20:41:44 as ** along with 3 people and 1 group jjray cisevol lambda cis-regulatory-evolution
  • Next-Generation Sequencing: The Race Is On
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 721-723.
    by Andreas von Bubnoff
    posted to dna review sequencing by stsaft on 2008-04-04 18:08:41 as ** along with 3 people giovenko dchughes jyuh
  • Modeling hybridization kinetics
    Mathematical Biosciences, Vol. 183, No. 1. (May 2003), pp. 37-47.
    by Jian-Ying Wang, Karl Drlica
    posted to dna hybridization kinetics by stsaft on 2008-03-29 20:06:10 as read
  • Statistical mechanics of base stacking and pairing in DNA melting
    Physical Review E, Vol. 70, No. 5. (16 November 2004), 051907.
    by Vassili Ivanov, Yan Zeng, Giovanni Zocchi
    posted to dna hybridization melting model simulation thermodynamic thermodynamics by stsaft on 2008-03-28 22:10:53 as ****
  • In Search of Optimal Codes for DNA Computing
    DNA Computing (2006), pp. 143-156.
    by Max Garzon, Vinhthuy Phan, Sujoy Roy, Andrew Neel
    posted to codeword codeword_design dna by stsaft on 2008-03-27 22:33:16 as **
  • DNA Codes and Their Properties
    DNA Computing (2006), pp. 127-142.
    by Lila Kari, Kalpana Mahalingam
    posted to codeword codeword_design dna theory by stsaft on 2008-03-27 22:30:01 as **
  • DNA computing approach to semantic knowledge representation
    Int. J. Hybrid Intell. Syst., Vol. 2, No. 1. (January 2005), pp. 1-12.
    by Yusei Tsuboi, Zuwairie Ibrahim, Osamu Ono
    posted to dna memories semantic by stsaft on 2008-03-27 22:17:09 as **
  • Potential for enlarging DNA memory: the validity of experimental operations of scaled-up nested primer molecular memory
    Biosystems, Vol. 80, No. 1. (April 2005), pp. 99-112.
    by Satoshi Kashiwamura, Masahito Yamamoto, Atsushi Kameda, Toshikazu Shiba, Azuma Ohuchi
    posted to dna memories nested primer by stsaft on 2008-03-27 22:04:23 as **
  • Hairpin-DNA memory Using Molecular Addressing
    Small, Vol. 2, No. 11. (2006), pp. 1244-1247.
    by Masahiro Takinoue, Akira Suyama
    posted to dna hairpin memories by stsaft on 2008-03-27 22:00:59 as read along with 1 person satsumakenji
  • Biomolecular Computation in Virtual Test Tubes
    DNA Computing (2002), pp. 117-128.
    by Max Garzon, Chris Oehmen
    posted to computing dna dna_computing simulations by stsaft on 2008-03-27 20:48:26 as **
  • Virtual test tubes: For biomolecule-based computing
    Natural Computing, Vol. 3, No. 4. (December 2004), pp. 461-477.
    by Max Garzon, Derrel Blain, Andrew Neel
    posted to computing dna simulation by stsaft on 2008-03-27 20:32:48 as **
  • Biomolecular computing: Is it ready to take off?
    Biotechnology Journal, Vol. 2, No. 1. (2007), pp. 91-101.
    by Pengcheng Fu
    posted to computing dna review by stsaft on 2008-03-27 20:27:41 as **
  • Self-Assembly of DNA-like Structures In Silico
    Genetic Programming and Evolvable Machines, Vol. 4, No. 2. (14 June 2003), pp. 185-200.
    by Max Garzon, Derrel Blain, Kiran Bobba, Andrew Neel, Michael West
    posted to computing dna efficiency hybridization memories simulation thermodynamics by stsaft on 2008-03-27 20:16:48 as **
  • notes Efficiency and Reliability of Semantic Retrieval in DNA-Based Memories
    DNA Computing (2004), pp. 157-169.
    by Max H Garzon, Kiran Bobba, Andrew Neel
    posted to computing dna memories search simulation by stsaft on 2008-03-27 20:12:41 as read
  • DNA preservation using diamond chips
    Diamond and Related Materials, Vol. 12, No. 3-7. ( 2003), pp. 572-576.
    by Kojiro Takahashi, Michifumi Tanga, Osamu Takai, Hiroshi Okamura
    posted to dna preservation by stsaft on 2008-03-25 20:16:11 as **
  • Preservation of DNA From Endangered Species
    Science, Vol. 289, No. 5480. (4 August 2000), pp. 725d-727.
    by Phillip A Morin;, Hendrik N Poinar, Geoffrey Eglinton;, Oliver A Ryder, Anne Mclaren, Ya-Ping Zhang, Sydney Brenner, Kurt Benirschke
    posted to dna preservation storage by stsaft on 2008-03-25 20:11:59 as **
  • DNA-functionalized single-walled carbon nanotubes
    Nanotechnology, Vol. 13, No. 5. (2002), pp. 601-604.
    by Chris Dwyer, Martin Guthold, Michael Falvo, Sean Washburn, Richard Superfine, Dorothy Erie
    posted to dna nanofabrication nanotechnology nanotubes self-assembly by stsaft on 2008-03-13 19:29:47 as ** along with 1 person and 1 group skoch3 Koch_Lab
  • Optical absorption and transient photobleaching in solutions of surfactant-encapsulated and DNA-wrapped single-walled carbon nanotubes
    Quantum Sensing and Nanophotonic Devices, Vol. 5359, No. 1. (2004), pp. 376-386.
    by Michael S Arnold, Song Lan, Samantha C Cruz, Jay E Sharping, Samuel I Stupp, Prem Kumar, Mark C Hersam
    edited by Manijeh Razeghi, Gail J Brown
    posted to carbon dna nanotubes by stsaft on 2008-03-07 08:33:30 as **
  • Architecture with GIDEON, a program for design in structural DNA nanotechnology.
    J Mol Graph Model, Vol. 25, No. 4. (December 2006), pp. 470-480.
    by JJ Birac, WB Sherman, J Kopatsch, PE Constantinou, NC Seeman
    posted to codeword codeword_design dna self-assembly by stsaft on 2008-02-29 03:36:51 as ** along with 1 person dna
  • Oriented and vectorial immobilization of linear M13 dsDNA between interdigitated electrodes--towards single molecule DNA nanostructures.
    Biosens Bioelectron, Vol. 18, No. 5-6. (May 2003), pp. 555-564.
    by R Hölzel, N Gajovic-Eichelmann, FF Bier
    posted to applications dna self-assembly sensing by stsaft on 2008-02-08 00:32:32 as ** along with 1 person dna
  • DNA Modeling within Ab Initio and Empirical Methods
    pp. 349-383.
    by I Cozmuta
    posted to dna kinetics model simulation thermodynamics by stsaft on 2008-02-05 00:47:46 as ****
  • Engineering Entropy-Driven Reactions and Networks Catalyzed by DNA
    Science, Vol. 318, No. 5853. (16 November 2007), pp. 1121-1125.
    by David Y Zhang, Andrew J Turberfield, Bernard Yurke, Erik Winfree
    posted to circuits dna logic networks by stsaft on 2008-01-21 19:06:07 as ** along with 1 person cactus
  • Untitled
    posted to codeword codeword_design dna dna_computing hybridization kinetics thermodynamic thermodynamics by stsaft on 2007-10-08 07:03:22 as **
  • Alignment-Based Approach for Durable Data Storage into Living Organisms
    Biotechnol. Prog., Vol. 23, No. 2. (9 April 2007), pp. 501-505.
    by N Yachie, K Sekiyama, J Sugahara, Y Ohashi, M Tomita
    posted to database databases dna memories memory by stsaft on 2007-06-20 17:07:20 as *****
  • Stable expression of immunoglobulin gene V(D)J recombinase activity by gene transfer into 3T3 fibroblasts
    Cell, Vol. 53, No. 1. (8 April 1988), pp. 107-115.
    by David G Schatz, David Baltimore
    posted to dna hairpin repair by stsaft on 2007-03-27 01:36:03 as **
  • DNA repair: Breaking the seal
    Nature, Vol. 416, No. 6882. (18 April 2002), pp. 691-694.
    by Sebastian D Fugmann
    posted to dna hairpin repair by stsaft on 2007-03-20 22:05:21 as read
  • Untitled
    posted to thermodynamics kinetics folding dna by stsaft on 2007-01-19 22:47:45 as *****
  • Parallel multiplex thermodynamic analysis of coaxial base stacking in DNA duplexes by oligodeoxyribonucleotide microchips
    Nucl. Acids Res., Vol. 29, No. 11. (1 June 2001), pp. 2303-2313.
    by Vadim A Vasiliskov, Dmitry V Prokopenko, Andrei D Mirzabekov
    posted to thermodynamics microarrays kinetics dna by stsaft on 2007-01-19 22:44:11 as *****
  • Prediction of hybridization and melting for double-stranded nucleic acids.
    Biophys J, Vol. 87, No. 1. (July 2004), pp. 215-226.
    by RA Dimitrov, M Zuker
    posted to thermodynamics kinetics dna by stsaft on 2007-01-19 22:38:28 as *****
  • Enzyme-free nucleic acid logic circuits.
    Science, Vol. 314, No. 5805. (8 December 2006), pp. 1585-1588.
    by G Seelig, D Soloveichik, DY Zhang, E Winfree
    posted to winfree logic dsp dna by stsaft on 2007-01-19 22:31:38 as ***** along with 3 people and 1 group satsumakenji cdawson drummstikk GIG
  • DNA Sequencing
    Vol. 2 (2006), pp. 427-437.
    by Sotirios A Tsaftaris, Aggelos K Katsaggelos
    edited by John G Webster
    posted to bibtex-import dna sequencing tsaftaris by stsaft on 2006-05-09 00:15:07 as **
  • Expression microarray hybridization kinetics depend on length of the immobilized DNA but are independent of immobilization substrate.
    Anal Biochem, Vol. 295, No. 2. (15 August 2001), pp. 149-157.
    by BA Stillman, JL Tonkinson
    posted to dna kinetics by stsaft on 2006-03-29 09:29:47 as **
  • Evaluating Las Vegas Algorithms - Pitfalls and Remedies
    (1998), pp. 238-245.
    by Holger Hoos, Thomas Stutzle
    posted to codeword dna local search by stsaft on 2006-03-14 04:10:52 as **
  • DNA probes: applications of the principles of nucleic acid hybridization
    Crit Rev Biochem Mol Biol, Vol. 26, No. 3-4. (1991), pp. 227-259.
    by JG Wetmur
    posted to dna thermodynamics by stsaft on 2006-03-07 05:23:24 as ** along with 1 person flying98
  • DNA in a material world
    Nature, Vol. 421, No. 6921. (23 January 2003), pp. 427-431.
    by NC Seeman
    posted to dna self-assembly by stsaft on 2006-03-07 05:02:25 as **
  • Sequence mapping by electronic PCR
    Genome Res, Vol. 7, No. 5. (May 1997), pp. 541-550.
    by GD Schuler
    posted to dna simulation by stsaft on 2006-03-07 04:59:52 as ** along with 1 person and 1 group jdelcampo Microbial-Ecology
  • Improved nearest-neighbor parameters for predicting DNA duplex stability
    Biochemistry, Vol. 35, No. 11. (19 March 1996), pp. 3555-3562.
    by J Santalucia, HT Allawi, PA Seneviratne
    posted to dna thermodynamics by stsaft on 2006-03-07 04:57:45 as read along with 2 people davidng yoanjacquemin
  • A biomolecular implementation of logically reversible computation with minimal energy dissipation
    Biosystems, Vol. 52, No. 1-3. (October 1999), pp. 15-23.
    by JP Klein, TH Leete, H Rubin
    posted to dna simulation by stsaft on 2006-03-07 04:55:53 as **
  • A mathematical model and a computerized simulation of PCR using complex templates
    Nucleic Acids Res, Vol. 24, No. 18. (15 September 1996), pp. 3538-3545.
    by E Rubin, AA Levy
    posted to dna kinetics simulation by stsaft on 2006-03-07 04:54:54 as **
  • REBASE--restriction enzymes and DNA methyltransferases
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by RJ Roberts, T Vincze, J Posfai, D Macelis
    posted to biotechnology dna enzymes by stsaft on 2006-03-07 04:45:04 as read
  • Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches
    Biochemistry, Vol. 38, No. 12. (23 March 1999), pp. 3468-3477.
    by N Peyret, PA Seneviratne, HT Allawi, J Santalucia
    posted to dna thermodynamics by stsaft on 2006-03-07 00:11:40 as read
  • A Stochastic Model and Simulation Algorithm for Polymerase Chain Reaction (PCR) Systems
    (2004)
    by A Hassibi, H Kakavand, TH Lee
    posted to dna dna_computing kinetics simulation by stsaft on 2006-03-06 23:52:49 as read
  • A New Metric for DNA Computing
    (JanuaryMarch-JanuaryJune July 1997), pp. 472-478.
    by M Garzon, P Neathery, R Deaton, RC Murphy, DR Franschetti, stevens
    edited by John R Koza, Kalyanmoy Deb, Marco Dorigo, David B Fogel, Max Garzon, Hitoshi Iba, Rick L Riolo
    posted to computing dna bibtex-import codeword dna_computing by stsaft on 2006-03-06 23:26:23 as **
  • Computing with DNA
    Scientific American, Vol. 279, No. 2. (August 1998), pp. 55-62.
    by Leonard Adleman
    posted to adleman computing dna by stsaft on 2006-03-06 22:53:25 as read
  • Modeling hybridization kinetics
    Math Biosci, Vol. 183, No. 1. (May 2003), pp. 37-47.
    by JY Wang, K Drlica
    posted to dna hybridization kinetics by stsaft on 2006-02-28 21:08:36 as **
  • Mfold web server for nucleic acid folding and hybridization prediction
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3406-3415.
    by M Zuker
    posted to dna folding kinetics by stsaft on 2006-02-28 21:03:43 as ** along with 6 people and 2 groups davidng dayjm balajis dquest cdawson vwchan beta GIG
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