suizifish's bioinformatics [31 articles] Export

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	Integrating transcription factor binding site information with gene expression datasets [My Copy] Bioinformatics In Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 298-305. by Ian B. Jeffery, Stephen F. Madden, Paul A. McGettigan, Guy Perriere, Aedin C. Culhane, Desmond G. Higgins posted to tfbs sp1 expression bioinformatics 2006 by suizifish on 2009-12-02 06:45:44 as along with 1 person bsamal
	Nucleosomes are well positioned in exons and carry characteristic histone modifications [My Copy] Genome Research, Vol. 19, No. 10. (18 October 2009), pp. 1732-1741. by Robin Andersson, Stefan Enroth, Alvaro Rada-Iglesias, Claes Wadelius, Jan Komorowski posted to nucleosomes histone_modification histone exon bioinformatics 2009 by suizifish on 2009-11-30 06:26:22 as along with 8 people xianjun owhitney lp2 megraw djkt fenghezi inesdesantiago cajunsushi
	The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. [My Copy] PLoS genetics, Vol. 4, No. 7. (25 July 2008), e1000138. by Yutao Fu, Manisha Sinha, Craig L. Peterson, Zhiping Weng posted to nucleosomes histone_modification histone ctcf bioinformatics 2008 by suizifish on 2009-11-30 06:06:49 as along with 8 people and 3 groups gderwin sebastien_vigneau madreach polivares cisevol djkt clearbluespring inesdesantiago CTCF JLab BergmanLab
	Combinatorial patterns of histone acetylations and methylations in the human genome [My Copy] Nature Genetics, Vol. 40, No. 7. (15 June 2008), pp. 897-903. by Zhibin Wang, Chongzhi Zang, Jeffrey A. Rosenfeld, et al.Dustin E. Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q. Zhang, Keji Zhao posted to histones histone_modifications histone_modification epigenetics data_set chip-seq cd4_t_cells bioinformatics 2008 by suizifish on 2009-11-05 04:28:35 as along with 17 people and 1 group rsaito akakak hagechouchin443 RyuOgawa tonamswish sebastien_vigneau gderwin oelemento raylim coela jernst bpcusack kambiz caseybrown djkt kengg inesdesantiago Epigenetics
	An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs) [My Copy] Genome Research, Vol. 18, No. 9. (24 September 2008), pp. 1518-1529. by Vardhman K. Rakyan, Thomas A. Down, Natalie P. Thorne, et al.Paul Flicek, Eugene Kulesha, Stefan GrÃ¤f, Eleni M. Tomazou, Liselotte BÃ¤ckdahl, Nathan Johnson, Marlis Herberth, Kevin L. Howe, David K. Jackson, Marcos M. Miretti, Heike Fiegler, John C. Marioni, Ewan Birney, Tim J. P. Hubbard, Nigel P. Carter, Simon TavarÃ©, Stephan Beck posted to methylome medip genome-wide epigenetics dna_methylation data_set bioinformatics 2008 by suizifish on 2009-11-05 04:19:23 as along with 8 people timhubbard abizar iris42 huiminC oelemento rschulz vega niallhaslam
	Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains [My Copy] Genome Research, Vol. 19, No. 1. (January 2009), pp. 24-32. by Suresh Cuddapah, Raja Jothi, Dustin E. Schones, Tae-Young Roh, Kairong Cui, Keji Zhao posted to tfbs tf histone data_set ctcf chip-seq bioinformatics 2009 by suizifish on 2009-11-05 03:23:54 as along with 13 people and 1 group aprickett gdb fenghezi clearbluespring rschulz xingxu sebastien_vigneau cassj caseybrown polivares inesdesantiago oelemento maximilianh CTCF
	MEME SUITE: tools for motif discovery and searching. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W202-208. by Timothy L. Bailey, Mikael Boden, Fabian A. Buske, et al.Martin Frith, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William S. Noble posted to tfbs motif bioinformatics 2009 by suizifish on 2009-10-28 05:55:27 as along with 7 people bsamal jlike maximilianh natstreet idonaldson nuin cassj
	Associating transcription factor-binding site motifs with target GO terms and target genes [My Copy] Nucl. Acids Res. (10 June 2008), gkn374. by Mikael Boden, Timothy L. Bailey posted to tfbs tf motif bioinformatics 2008 by suizifish on 2009-10-28 05:49:05 as along with 5 people aramesh2 mikaelboden maximilianh guhjy dgroth
	CpG island methylation pattern in different human tissues and its correlation with gene expression [My Copy] Biochemical and Biophysical Research Communications, Vol. 383, No. 4. (12 June 2009), pp. 421-425. by Shicai Fan, Xuegong Zhang posted to 2009 bioinformatics cpg cpg_island de_novo_dna_methylation dna_methylation by suizifish on 2009-07-11 08:30:39 as
	Cepred: Predicting the Co-Expression Patterns of the Human Intronic microRNAs with Their Host Genes [My Copy] PLoS One, Vol. 4, No. 2. (10 February 2009), e4421. by Dong Wang, Ming Lu, Jing Miao, Tingting Li, Edwin Wang, Qinghua Cui posted to 2009 bioinformatics epigenetics non_coding_rna prediction svm by suizifish on 2009-06-03 09:52:19 as along with 9 people and 1 group Garamonfok guhjy jfr heliopais ealloza samgj pengchy daforerog mhamada microRNA
	An Analysis of Human MicroRNA and Disease Associations [My Copy] PLoS ONE, Vol. 3, No. 10. (15 October 2008), e3420. by Ming Lu, Qipeng Zhang, Min Deng, et al.Jing Miao, Yanhong Guo, Wei Gao, Qinghua Cui posted to 2008 bioinformatics cancer clustering disease epigenetics non_coding_rna by suizifish on 2009-06-03 09:48:26 as along with 5 people and 1 group daforerog qfwills jfr ealloza pengchy microRNA
	Developmental programming of CpG island methylation profiles in the human genome [My Copy] Nat Struct Mol Biol, Vol. 16, No. 5. (19 May 2009), pp. 564-571. by Ravid Straussman, Deborah Nejman, Douglas Roberts, et al.Israel Steinfeld, Barak Blum, Nissim Benvenisty, Itamar Simon, Zohar Yakhini, Howard Cedar posted to 2009 bioinformatics cpg de_novo_dna_methylation developmental dna_methylation epigenetics by suizifish on 2009-05-25 16:47:22 as
	Putative Zinc Finger Protein Binding Sites Are Over-Represented in the Boundaries of Methylation-Resistant CpG Islands in the Human Genome [My Copy] PLoS ONE, Vol. 2, No. 11. (21 November 2007), e1184. by Shicai Fan, Fang Fang, Xuegong Zhang, Michael Q. Zhang posted to 2007 bioinformatics dna_methylation epigenetics transcription by suizifish on 2009-05-25 15:51:03 as
	CpG Island Mapping by Epigenome Prediction [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (8 June 2007), e110. by Christoph Bock, Jörn Walter, Martina Paulsen, Thomas Lengauer posted to 2007 bioinformatics cpg dna_methylation prediction by suizifish on 2009-05-25 14:35:56 as along with 11 people hagechouchin443 iris42 aprasad bpcusack kaarsinogen sebastien_vigneau zwang oelemento fpattyn rschulz inesdesantiago
	Predicting methylation status of CpG islands in the human brain [My Copy] Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2204-2209. by Fang, Fang, Fan, et al. Shicai, Zhang, Xuegong, Zhang, Q. Michael posted to 2006 bioinformatics cpg dna_methylation transcription by suizifish on 2009-05-25 14:15:57 as along with 2 people iris42 kaarsinogen
	Mapping of genetic and epigenetic regulatory networks using microarrays. [My Copy] Nat Genet, Vol. 37 Suppl (June 2005) by B. van Steensel posted to 2005 bioinformatics epigenetic_network epigenetics by suizifish on 2009-05-22 11:59:48 as along with 2 people textoris maralena
	Inferring causal relationships among different histone modifications and gene expression [My Copy] Genome Research, Vol. 18, No. 8. (18 August 2008), pp. 1314-1324. by Hong Yu, Shanshan Zhu, Bing Zhou, Huiling Xue, Jing-Dong J. Han posted to 2008 bioinformatics clustering epigenetics histone histone_code histone_modification prediction by suizifish on 2009-05-21 12:19:30 as along with 10 people daveGerrard mingzhi felsani fpattyn rschulz ptrobajo bootsy bcondon sharmapank klo
	Hierarchical Clustering of Lung Cancer Cell Lines Using DNA Methylation Markers [My Copy] Cancer Epidemiol Biomarkers Prev, Vol. 11, No. 3. (1 March 2002), pp. 291-297. by Arvind K. Virmani, Jeffrey A. Tsou, Kimberly D. Siegmund, et al.Linda Y. Shen, Tiffany I. Long, Peter W. Laird, Adi F. Gazdar, Ite A. Laird-Offringa posted to 2002 bioinformatics cancer clustering dna_methylation epigenetics method by suizifish on 2009-05-21 11:44:56 as
	Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation. [My Copy] PLoS Comput Biol, Vol. 2, No. 9. (1 September 2006) by Zhong Wang, Huntington F F. Willard, Sayan Mukherjee, Terrence S S. Furey posted to 2006 bioinformatics epigenetics x_inactivation by suizifish on 2009-05-12 15:04:15 as along with 2 people vplagnol inesdesantiago
	A stem cell -like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing. [My Copy] Nat Genet (9 January 2007) by Joyce Ohm, Kelly McGarvey, Xiaobing Yu, et al.Linzhao Cheng, Kornel Schuebel, Leslie Cope, Helai Mohammad, Wei Chen, Vincent Daniel, Wayne Yu, David Berman, Thomas Jenuwein, Kevin Pruitt, Saul Sharkis, D Neil N. Watkins, James Herman, Stephen Baylin posted to 2007 bioinformatics cancer dna_methylation epigenetics histone histone_modification prediction by suizifish on 2009-05-12 13:38:32 as along with 1 person Anders
	Genome-wide prediction of imprinted murine genes. [My Copy] Genome Res, Vol. 15, No. 6. (June 2005), pp. 875-884. by P. P. Luedi, A. J. Hartemink, R. L. Jirtle posted to 2005 bioinformatics epigenetics gene genome imprinting prediction by suizifish on 2009-05-12 13:23:43 as along with 2 people and 1 group stevanspringer inesdesantiago FAB-lab
	Nucleosome positions predicted through comparative genomics [My Copy] Nature Genetics, Vol. 38, No. 10. (10 September 2006), pp. 1210-1215. by Ilya P. Ioshikhes, Istvan Albert, Sara J. Zanton, Franklin B. Pugh posted to 2006 bioinformatics epigenetics epigenomics nucleosome prediction by suizifish on 2009-05-12 12:53:57 as along with 4 people hagechouchin443 ilyashl nklee sonjadaniela
	Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome [My Copy] Nat Genet, Vol. 39, No. 3. (04 February 2007), pp. 311-318. by Nathaniel D. Heintzman, Rhona K. Stuart, Gary Hon, et al.Yutao Fu, Christina W. Ching, R. David Hawkins, Leah O. Barrera, Sara Van Calcar, Chunxu Qu, Keith A. Ching, Wei Wang, Zhiping Weng, Roland D. Green, Gregory E. Crawford, Bing Ren posted to 2007 bioinformatics epigenetics histone histone_modification prediction by suizifish on 2009-05-12 12:36:49 as along with 13 people and 2 groups rsaito tonamswish hagechouchin443 absterga raylim kengg djkt mgaldzic olympos skoch3 epigenetics caseybrown inesdesantiago CHIP Plantandetc
	Computational prediction of methylation status in human genomic sequences [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 28. (11 July 2006), pp. 10713-10716. by Rajdeep Das, Nevenka Dimitrova, Zhenyu Xuan, et al.Robert A. Rollins, Fatemah Haghighi, John R. Edwards, Jingyue Ju, Timothy H. Bestor, Michael Q. Zhang posted to 2006 bioinformatics dna_methylation epigenetics prediction by suizifish on 2009-05-12 12:24:52 as along with 4 people iris42 eckart_bindewald olympos epigenetics
	CpG Island Methylation in Human Lymphocytes Is Highly Correlated with DNA Sequence, Repeats, and Predicted DNA Structure [My Copy] PLoS Genet, Vol. 2, No. 3. (3 March 2006), e26. by Christoph Bock, Martina Paulsen, Sascha Tierling, Thomas Mikeska, Thomas Lengauer, Jörn Walter posted to 2006 bioinformatics cpg epigenetics prediction by suizifish on 2009-05-12 11:20:31 as along with 9 people aprasad misonneh huiminC kaarsinogen eckart_bindewald olympos epigenetics oelemento clearbluespring
	Theoretical Analysis of Epigenetic Cell Memory by Nucleosome Modification [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 813-822. by Ian B. Dodd, Mille A. Micheelsen, Kim Sneppen, Genevieve Thon posted to 2007 bioinformatics epigenetics by suizifish on 2009-05-10 15:07:12 as along with 4 people and 1 group bertelsen inesdesantiago biomcgary jasonflannick Marcotte_Lab
	Computational epigenetics [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 1-10. by Christoph Bock, Thomas Lengauer posted to 2008 bioinformatics epigenetics review by suizifish on 2009-05-10 14:13:31 as along with 17 people and 2 groups operon iris42 pawelsobko huali mmartin sebastien_vigneau ealloza djkt frohike timflutre cjeans epigenetics cabbagezs barriot Ema Thomasah guhjy SIMR bioinformatics Bioinformatics
	DNA methylation profiling of human chromosomes 6, 20 and 22. [My Copy] Nat Genet (29 October 2006) by Florian Eckhardt, Joern Lewin, Rene Cortese, et al.Vardhman K K. Rakyan, John Attwood, Matthias Burger, John Burton, Tony V V. Cox, Rob Davies, Thomas A A. Down, Carolina Haefliger, Roger Horton, Kevin Howe, David K K. Jackson, Jan Kunde, Christoph Koenig, Jennifer Liddle, David Niblett, Thomas Otto, Roger Pettett, Stefanie Seemann, Christian Thompson, Tony West, Jane Rogers, Alex Olek, Kurt Berlin, Stephan Beck posted to 2006 bioinformatics dna_methylation epigenetics epigenomics methylome by suizifish on 2009-04-20 06:32:46 as along with 4 people plofje shigepong epigenetics jo_davies
	Transient Homologous Chromosome Pairing Marks the Onset of X Inactivation. [My Copy] Science (19 January 2006) by Na Xu, Chia-Lun L. Tsai, Jeannie T T. Lee posted to 2006 bioinformatics epigenetics x_inactivation by suizifish on 2009-04-19 16:12:43 as along with 2 people and 1 group mtagaya cmm FAB-lab
	Protease degradomics: mass spectrometry discovery of protease substrates and the CLIP-CHIP, a dedicated DNA microarray of all human proteases and inhibitors. [My Copy] Biological chemistry, Vol. 385, No. 6. (June 2004), pp. 493-504. by C. M. Overall, E. M. Tam, R. Kappelhoff, et al.A. Connor, T. Ewart, C. J. Morrison, X. Puente, C. López-Otín, A. Seth posted to 2004 bioinformatics clip-chip method microarray sequencing by suizifish on 2009-03-23 17:30:57 as
	High-resolution profiling of histone methylations in the human genome. [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837. by Artem Barski, Suresh Cuddapah, Kairong Cui, et al.Tae-Young Y. Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao posted to 2007 bioinformatics chip-seq data_set epigenetics histone_modification method pattern by suizifish on 2009-03-22 09:19:55 as along with 22 people and 2 groups rsaito darian tonamswish stubrown fpattyn hagechouchin443 absterga ewilban1 jochenG caseybrown raylim jernst giovenko guhjy kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha inesdesantiago dquest JLab Plantandetc

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epigenetics	64
dna_methylation	32
bioinformatics	31
review	26
2007	25
histone	21
2006	19
2008	19
histone_modification	16
2009	15
cancer	13
sp1	12
prediction	11
data_set	9
cpg	9
2005	8
2004	7
epigenomics	7
tfbs	7
de_novo_dna_methylation	6
transcription	6
x_inactivation	5
method	5
methylome	5
non_coding_rna	5
pcgtrxg	5
class	4
imprinting	4
histone_variants	4
epigenetic_memory	3
clustering	3
motif	3
genome	3
pathway	3
rnai	3
ctcf	3
expression	3
heterochromatin	3
chip-seq	3
tf	3
nucleosome	3
1998	2
chromatin_remodeling	2
2002	2
nucleosomes	2
gene	2
dna_structure	2
histones	2
mbd_protein	2
svm	2
histone_modifications	2
cpg_island	2
clip-chip	2
histone_code	2
genome-wide	2
silencer	1
pattern	1
promoter	1
disease	1
marveld1	1
ourlab	1
developmental	1
p21	1
cd4_t_cells	1
insulators	1
epigenetic_network	1
signal	1
exon	1
2003	1
1999	1
sequencing	1
enhancers	1
sex	1
sp3	1
non_cpg_methylation	1
arginine_methylation	1
spermatogenesis	1
evolution	1
1994	1
twins	1
medip	1
microarray	1

suizifish's bioinformatics [31 articles] Export

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