sunhwan's library 98 articles Export

	Fundamental Aspects of Protein−Protein Association Kinetics [My Copy] Chemical Reviews, Vol. 109, No. 3. (11 March 2009), pp. 839-860. by G. Schreiber, G. Haran, H. X. Zhou posted to no-tag by sunhwan on 2009-03-25 16:47:03 as along with 10 people and 2 groups anuragsethi barry jmccammon sobolevnrm willard kafuitay carlosjavierna sschurer hadesnumb paulschlesinger McCammon baker-group
	The influence of anesthetics, neurotransmitters and antibiotics on the relaxation processes in lipid membranes [My Copy] (2 Mar 2007) by Heiko M. Seeger, Marie L. Gudmundsson, Thomas Heimburg posted to no-tag by sunhwan on 2009-03-22 18:18:36 as along with 1 person paulschlesinger
	Dynamical motions of lipids and a finite size effect in simulations of bilayers [My Copy] The Journal of Chemical Physics, Vol. 125, No. 14. (2006) by Jeffery B. Klauda, Bernard R. Brooks, Richard W. Pastor posted to membrane by sunhwan on 2008-10-05 05:06:14 as
	Molecular dynamics simulation of a phospholipid membrane [My Copy] European Biophysics Journal, Vol. 22, No. 6. (1 February 1994), pp. 423-436. by Egbert Egberts, Siewert-Jan Marrink, Herman J. Berendsen posted to membrane by sunhwan on 2008-10-03 06:35:59 as
	Cholesterol-Induced Modifications in Lipid Bilayers: A Simulation Study [My Copy] Biophys. J., Vol. 83, No. 4. (1 October 2002), pp. 1842-1853. by S. W. Chiu, Eric Jakobsson, Jay R. Mashl, Larry H. Scott posted to membrane by sunhwan on 2008-10-03 06:35:29 as
	Molecular Dynamics Simulations of Phospholipid Bilayers with Cholesterol [My Copy] Biophys. J., Vol. 84, No. 4. (1 April 2003), pp. 2192-2206. by Christofer Hofsass, Erik Lindahl, Olle Edholm posted to membrane by sunhwan on 2008-10-03 06:35:21 as
	Structure of Sphingomyelin Bilayers: A Simulation Study [My Copy] Biophys. J., Vol. 85, No. 6. (1 December 2003), pp. 3624-3636. by S. W. Chiu, S. Vasudevan, Eric Jakobsson, Jay R. Mashl, Larry H. Scott posted to membrane by sunhwan on 2008-10-03 06:35:12 as
	Molecular dynamics simulations of hydrophilic pores in lipid bilayers. [My Copy] Biophys J, Vol. 86, No. 4. (April 2004), pp. 2156-2164. by H. Leontiadou, A. E. Mark, S. J. Marrink posted to membrane by sunhwan on 2008-10-03 06:35:03 as along with 2 people and 3 groups piscinero divadyrral Fluid-Mechanics-and-Thermal-Science-Research Computational_Systems_Biology XMLDataManagement
	Cationic DMPC/DMTAP Lipid Bilayers: Molecular Dynamics Study [My Copy] Biophys. J., Vol. 86, No. 6. (1 June 2004), pp. 3461-3472. by Andrey A. Gurtovenko, Michael Patra, Mikko Karttunen, Ilpo Vattulainen posted to membrane by sunhwan on 2008-10-03 06:34:54 as along with 2 people softsimu robertvacha
	Molecular Dynamics Simulations and 2H NMR Study of the GalCer/DPPG Lipid Bilayer [My Copy] Biophys. J., Vol. 88, No. 6. (1 June 2005), pp. 4017-4031. by T. Zaraiskaya, K. R. Jeffrey posted to no-tag by sunhwan on 2008-10-03 06:34:46 as
	Molecular Simulation Study of Structural and Dynamic Properties of Mixed DPPC/DPPE Bilayers. [My Copy] Biophys J (13 March 2006) by Sukit Leekumjorn, Amadeu K K. Sum posted to membrane by sunhwan on 2008-10-03 06:34:37 as along with 4 people dimka yoel_rf easybakemuffin softsimu
	Comparing Experimental and Simulated Pressure-Area Isotherms for DPPC [My Copy] Biophys. J., Vol. 94, No. 8. (15 April 2008), pp. 2965-2986. by Susan L. Duncan, Ronald G. Larson posted to no-tag by sunhwan on 2008-10-03 06:34:26 as along with 2 people and 1 group paulschlesinger sobolevnrm baker-group
	Molecular dynamics simulations of asymmetric NaCl and KCl solutions separated by phosphatidylcholine bilayers: potential drops and structural changes induced by strong Na+-lipid interactions and finite size effects [My Copy] Biophys. J. (25 January 2008), biophysj.107.116335. by Sun-Joo Lee, Yuhua Song, Nathan A. Baker posted to no-tag by sunhwan on 2008-10-03 06:34:16 as along with 4 people and 1 group robertvacha sunnytov sobolevnrm paulschlesinger baker-group
	Incorporation of surface tension into molecular dynamics simulation of an interface: a fluid phase lipid bilayer membrane. [My Copy] Biophys. J., Vol. 69, No. 4. (1 October 1995), pp. 1230-1245. by S. W. Chiu, M. Clark, V. Balaji, S. Subramaniam, H. L. Scott, E. Jakobsson posted to no-tag by sunhwan on 2008-10-03 06:34:02 as
	Chemical & Engineering News: Latest News - Proteins Caught In The Act [My Copy] posted to no-tag by sunhwan on 2008-10-02 18:23:42 as
	Energy landscape along an enzymatic reaction trajectory: hinges or cracks? [My Copy] HFSP Journal, Vol. 2, No. 2. (2008), pp. 61-64. by Paul C. Whitford, José N. Onuchic, Peter G. Wolynes posted to no-tag by sunhwan on 2008-10-02 18:23:12 as along with 2 people barry aqeel
	Recent developments in methodologies for calculating the entropy and free energy of biological systems by computer simulation [My Copy] Current Opinion in Structural Biology In Theory and simulation / Macromolecular assemblages, Vol. 17, No. 2. (April 2007), pp. 181-186. by H. Meirovitch posted to no-tag by sunhwan on 2008-10-02 18:23:06 as along with 4 people and 1 group flbarroso aqeel dmobley cchang Chang group
	Computing conformational free energy by deactivated morphing [My Copy] The Journal of Chemical Physics, Vol. 129, No. 13. (2008), 134102. by Sanghyun Park, Albert Y. Lau, Benoît Roux posted to no-tag by sunhwan on 2008-10-02 18:22:54 as along with 3 people and 1 group paddydu sobolevnrm agrossfield baker-group
	Modelling Myc inhibition as a cancer therapy [My Copy] Nature (17 August 2008) by Laura Soucek, Jonathan Whitfield, Carla P. Martins, et al.Andrew J. Finch, Daniel J. Murphy, Nicole M. Sodir, Anthony N. Karnezis, Lamorna B. Swigart, Sergio Nasi, Gerard I. Evan posted to no-tag by sunhwan on 2008-10-02 18:22:33 as along with 1 person jfr
	Water at an electrochemical interface-a simulation study [My Copy] Faraday Discuss. (2009) by Adam P. Willard, Stewart K. Reed, Paul A. Madden, David Chandler posted to no-tag by sunhwan on 2008-10-02 18:22:24 as
	Molecular Recognition of Histidine-Tagged Molecules by Metal-Chelating Lipids Monitored by Fluorescence Energy Transfer and Correlation Spectroscopy [My Copy] J. Am. Chem. Soc., Vol. 120, No. 12. (1 April 1998), pp. 2753-2763. by I. T. Dorn, K. R. Neumaier, R. Tampe posted to no-tag by sunhwan on 2008-10-02 18:20:39 as along with 1 person paulschlesinger
	Make Life Simple: Unleash the Full Power of the Parallel Tempering Algorithm [My Copy] Physical Review Letters, Vol. 101, No. 13. (2008) by Elmar Bittner, Andreas N. Baumer, Wolfhard Janke posted to no-tag by sunhwan on 2008-10-02 18:20:19 as
	A mathematical model for brain tumor response to radiation therapy [My Copy] Journal of Mathematical Biology by R. Rockne, E. Alvord, J. Rockhill, K. Swanson posted to no-tag by sunhwan on 2008-10-02 18:20:08 as
	Calculation of Absolute Ligand Binding Free Energy to a Ribosome-Targeting Protein as a Function of Solvent Model [My Copy] J. Phys. Chem. B (27 September 2008) by Michael S. Lee, Mark A. Olson posted to no-tag by sunhwan on 2008-10-02 18:20:00 as
	Advanced Genomic Data Mining [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000121. by Xosé M. Fernández-Suárez, Ewan Birney posted to no-tag by sunhwan on 2008-10-02 18:19:47 as along with 19 people and 1 group Zephyrus mhamada daforerog kshameer jfr guhjy taguchi giovenko inesdesantiago usagi-kirin fgibson cisevol rdiaz aramesh2 druvus mitko jandot jameswasmuth dullhunk BergmanLab
	Lipid flip-flop driven mechanical and morphological changes in model membranes [My Copy] The Journal of Chemical Physics, Vol. 129, No. 12. (2008) by Sanoop Ramachandran, Sunil P. B. Kumar, Mohamed Laradji posted to no-tag by sunhwan on 2008-10-02 18:19:34 as along with 1 person paulschlesinger
	Hydration dynamics of purple membranes [My Copy] Faraday Discuss. (2009) by Douglas J. Tobias, Neelanjana Sengupta, Mounir Tarek posted to no-tag by sunhwan on 2008-10-02 18:19:28 as
	Predicting protein function from domain content [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), 2275. by Kristoffer Forslund, Erik L. Sonnhammer posted to no-tag by sunhwan on 2008-10-02 18:19:19 as
	Mixture models for protein structure ensembles [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2184-2192. by Michael Hirsch, Michael Habeck posted to no-tag by sunhwan on 2008-10-02 18:19:08 as along with 1 person i000
	Site-Specific Evolutionary Rates in Proteins Are Better Modeled as Non-Independent and Strictly Relative [My Copy] Bioinformatics (28 July 2008), btn395. by Andrew D. Fernandes, William R. Atchley posted to no-tag by sunhwan on 2008-10-02 18:18:58 as along with 1 person and 1 group djkt iSEEM
	Theory of simple biochemical “shape recognition” via diffusion from activator coated nanoshapes [My Copy] The Journal of Chemical Physics, Vol. 129, No. 12. (2008) by D. R. Daniels posted to no-tag by sunhwan on 2008-10-02 18:18:42 as
	The effect of salt on the melting of ice: A molecular dynamics simulation study [My Copy] The Journal of Chemical Physics, Vol. 129, No. 12. (2008) by Jun S. Kim, Arun Yethiraj posted to no-tag by sunhwan on 2008-10-02 18:17:09 as along with 1 person madabatu
	On the simulated scaling based free energy simulations: Adaptive optimization of the scaling parameter intervals [My Copy] The Journal of Chemical Physics, Vol. 129, No. 12. (2008) by Lianqing Zheng, Wei Yang posted to no-tag by sunhwan on 2008-10-02 18:16:55 as
	Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Theresa A. Ramelot, Srivatsan Raman, Alexandre P. Kuzin, et al.Rong Xiao, Li-Chung Ma, Thomas B. Acton, John F. Hunt, Gaetano T. Montelione, David Baker, Michael A. Kennedy posted to no-tag by sunhwan on 2008-10-02 18:13:53 as along with 2 people pansapiens neils
	The Dynamic Orientation of Membrane-Bound Peptides: Bridging Simulations and Experiments [My Copy] Biophys. J., Vol. 93, No. 12. (15 December 2007), pp. 4278-4288. by Santi Esteban-Martin, Jesus Salgado posted to no-tag by sunhwan on 2008-10-02 18:13:41 as along with 1 person paulschlesinger
	Kinetic Analysis of Permeation of Mitochondria-Targeted Antioxidants Across Bilayer Lipid Membranes [My Copy] Journal of Membrane Biology by Tatyana Rokitskaya, Sergey Klishin, Inna Severina, Vladimir Skulachev, Yuri Antonenko posted to no-tag by sunhwan on 2008-10-02 18:12:48 as
	Mathematical modelling of the influence of heat shock proteins on cancer invasion of tissue [My Copy] Journal of Mathematical Biology by Zuzanna Szymańska, Jakub Urbański, Anna Marciniak-Czochra posted to no-tag by sunhwan on 2008-10-02 18:12:44 as
	Probing the Lipid Membrane Dipole Potential [My Copy] Biophys. J. (19 September 2008), biophysj.108.136507. by Yi Yang, Kathryn M. Mayer, Nissanka S. Wickremasinghe, Jason H. Hafner posted to no-tag by sunhwan on 2008-10-02 18:12:07 as along with 3 people and 1 group sobolevnrm agrossfield paulschlesinger baker-group
	Coarse-Grained Molecular Dynamics Simulations of the Energetics of Helix Insertion into a Lipid Bilayer [My Copy] Biochemistry (2 October 2008) by Peter J. Bond, Chze L. Wee, Mark S. Sansom posted to no-tag by sunhwan on 2008-10-02 18:10:47 as along with 3 people and 1 group sobolevnrm agrossfield paulschlesinger baker-group
	Diffusion of Macromolecules on Lipid Vesicles [My Copy] Langmuir (2 October 2008) by W. T. Góźdź posted to no-tag by sunhwan on 2008-10-02 18:10:38 as along with 1 person paulschlesinger
	CONFORMATIONAL TRANSITION PATHWAYS EXPLORED BY MONTE CARLO SIMULATION INTEGRATED WITH COLLECTIVE MODES [My Copy] Biophys. J. (1 August 2008), biophysj.107.128447. by Nigar Kantarci-Carsibasi, Turkan Haliloglu, Pemra Doruker posted to no-tag by sunhwan on 2008-10-02 18:10:22 as along with 5 people and 1 group sobolevnrm paulschlesinger oteri viktor21614 aqeel baker-group
	Membrane mechanics as a probe of ion-channel gating mechanisms [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 78, No. 4. (2008) by Daniel Reeves, Tristan Ursell, Pierre Sens, Jane Kondev, Rob Phillips posted to no-tag by sunhwan on 2008-10-02 04:34:12 as along with 1 person paulschlesinger
	Cholesterol Interactions with Fluid-Phase Phospholipids: Effect on the Lateral Organization of the Bilayer [My Copy] Biophys. J., Vol. 95, No. 8. (15 October 2008), pp. 3861-3871. by Katrin K. Halling, Bodil Ramstedt, Joel H. Nystrom, Peter J. Slotte, Thomas K. Nyholm posted to no-tag by sunhwan on 2008-10-02 04:31:33 as along with 1 person paulschlesinger
	Nonlinear Poisson--Boltzmann model of charged lipid membranes: Accounting for the presence of zwitterionic lipids [My Copy] The Journal of Chemical Physics, Vol. 129, No. 12. (2008) by Demmelash H. Mengistu, Sylvio May posted to no-tag by sunhwan on 2008-09-30 19:03:37 as along with 2 people agrossfield paulschlesinger
	SIGGRAPH 2008: CUDA [My Copy] posted to no-tag by sunhwan on 2008-09-17 03:11:52 as
	Reconstructing atomistic detail for coarse-grained models with resolution exchange [My Copy] The Journal of Chemical Physics, Vol. 129, No. 11. (2008) by Pu Liu, Qiang Shi, Edward Lyman, Gregory A. Voth posted to no-tag by sunhwan on 2008-09-17 03:10:49 as along with 1 person agrossfield
	Molecular signatures of ribosomal evolution [My Copy] Proceedings of the National Academy of Sciences (2008) by Elijah Roberts, Anurag Sethi, Jonathan Montoya, Carl R. Woese, Zaida Luthey-Schulten posted to no-tag by sunhwan on 2008-09-17 03:10:37 as along with 3 people eroberts00 bpcusack skato_toyaku
	On the relationship between folding and chemical landscapes in enzyme catalysis [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 37. (2008), pp. 13877-13882. by Maite Roca, Benjamin Messer, Donald Hilvert, Arieh Warshel posted to no-tag by sunhwan on 2008-09-17 03:10:15 as along with 1 person skoddet
	Cooperativity, connectivity, and folding pathways of multidomain proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 37. (2008), pp. 13865-13870. by Kazuhito Itoh, Masaki Sasai posted to no-tag by sunhwan on 2008-09-17 03:10:01 as along with 1 person apaydin
	Implicit Solvent Electrostatics in Biomolecular Simulation [My Copy] New Algorithms for Macromolecular Simulation (2006), pp. 263-295. by Nathan Baker, Donald Bashford, David Case posted to no-tag by sunhwan on 2008-09-17 03:02:11 as along with 6 people flbarroso Scis0000002 dmitry_s_yershov stephenbond onufriev qwermish

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