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	Toward a Coarse-Grained Protein Model Coupled with a Coarse-Grained Solvent Model: Solvation Free Energies of Amino Acid Side Chains [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 11. (11 November 2008), pp. 1891-1901. by Wei Han, Cheuk-Kin Wan, Yun-Dong Wu posted to coarse-graining protein by sunrise on 2009-04-15 02:47:46 as along with 3 people rbaron agrossfield middledomain
	The MARTINI Force Field: Coarse Grained Model for Biomolecular Simulations. [My Copy] Journal of Physical Chemistry B, Vol. 111, No. 27. (1 July 2007), pp. 7812-7824. by Siewert J. Marrink, H. J. Risselada, Serge Yefimov, D. P. Tieleman, Alex H. Vries posted to coarse-graining martini by sunrise on 2009-04-03 04:31:07 as along with 7 people and 2 groups anuragsethi A_Coletta_Thesis Marine choonpeng softsimu dimka sunnytov Structural Biology Group TorVergata Molecular dynamics in MSU
	Simulations of biomembranes and water: Important technical aspects [My Copy] Fluid Phase Equilib., Vol. 261, No. 1-2. (2007), pp. 18-25. by S. V. Bennun, A. N. Dickey, C. Xing, R. Faller posted to membrane water by sunrise on 2009-04-03 04:30:44 as along with 2 people jingrebeccali softsimu
	The MARTINI Coarse-Grained Force Field: Extension to Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 5. (1 May 2008), pp. 819-834. by Luca Monticelli, Senthil K. Kandasamy, Xavier Periole, Ronald G. Larson, D. Peter Tieleman, Siewert-Jan Marrink posted to coarse-graining by sunrise on 2009-04-03 04:30:14 as along with 13 people and 3 groups arnaucordomi dimka oteri flbarroso A_Coletta_Thesis krapnik Marine middledomain sobolevnrm Ema aqeel DanielParton softsimu Structural Biology Group TorVergata Molecular dynamics in MSU baker-group
	The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models [My Copy] The Journal of Chemical Physics, Vol. 128, No. 24. (2008), 244114. by W. G. Noid, Jhih W. Chu, Gary S. Ayton, et al.Vinod Krishna, Sergei Izvekov, Gregory A. Voth, Avisek Das, Hans C. Andersen posted to coarse-graining by sunrise on 2009-04-03 04:29:46 as along with 3 people edws softsimu A_Coletta_Thesis
	The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models [My Copy] The Journal of Chemical Physics, Vol. 128, No. 24. (2008), 244115. by W. G. Noid, Pu Liu, Yanting Wang, et al.Jhih W. Chu, Gary S. Ayton, Sergei Izvekov, Hans C. Andersen, Gregory A. Voth posted to coarse-graining by sunrise on 2009-04-03 04:29:26 as along with 4 people edws softsimu A_Coletta_Thesis agrossfield
	Coarse-Graining in Polymer Simulation: From the Atomistic to the Mesoscopic Scale and Back [My Copy] ChemPhysChem, Vol. 3, No. 9. (2002), pp. 754-769. by Florian Müller-Plathe posted to coarse-graining by sunrise on 2009-04-03 04:24:53 as along with 2 people ttjoseph kaz229
	Structural biology: Actin in a twist [My Copy] Nature, Vol. 457, No. 7228. (21 January 2009), pp. 389-390. by Kenneth C. Holmes posted to actin by sunrise on 2009-03-17 08:00:20 as along with 3 people loison reyez melting
	Myosin VI walks hand-over-hand along actin. [My Copy] Nature structural & molecular biology, Vol. 11, No. 9. (September 2004), pp. 884-887. by Z. Okten, L. S. Churchman, R. S. Rock, J. A. Spudich posted to actin myosin by sunrise on 2009-03-17 07:59:58 as along with 1 person melting
	Stabilizing effect of knots on proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 50. (16 December 2008), pp. 19714-19719. by Joanna I. Sułkowska, Piotr Sułkowski, P. Szymczak, Marek Cieplak posted to knot protein by sunrise on 2009-03-17 07:59:42 as along with 3 people melting cactus itmeson
	Coordinated Chemomechanical Cycles: A Mechanism for Autonomous Molecular Motion [My Copy] Physical Review Letters, Vol. 101, No. 23. (2008) by S. J. Green, J. Bath, A. J. Turberfield posted to brownian by sunrise on 2009-03-17 07:51:31 as along with 2 people dchen melting
	Reaction-rate theory: fifty years after Kramers [My Copy] Reviews of Modern Physics, Vol. 62, No. 2. (Apr 1990), pp. 251-341. by Peter Hänggi, Peter Talkner, Michal Borkovec posted to rate reaction by sunrise on 2009-03-16 06:47:00 as along with 9 people biblioteca_babel devinli chiufanlee yofar Diego_Prada and_ped10 gi0rgi0ne ibschwartz dherkova
	Brownian Motors [My Copy] Physics Today, Vol. 55, No. 11. (2002), pp. 33-39. by Dean R. Astumian, Peter Hanggi posted to brownian movement by sunrise on 2009-03-16 06:41:07 as along with 1 person ibschwartz
	Chemical physics: How to keep dry in water [My Copy] Nature, Vol. 423, No. 6935. (1 May 2003), pp. 25-26. by Philip Ball posted to water by sunrise on 2009-03-01 06:39:35 as
	Hydration and Hydrogen Bonding of Carbonyls in Dimyristoyl-Phosphatidylcholine Bilayer [My Copy] Journal of the American Chemical Society, Vol. 128, No. 29. (1 July 2006), pp. 9466-9471. by Victor V. Volkov, Francesca Nuti, Yuji Takaoka, Riccardo Chelli, Anna M. Papini, Roberto Righini posted to bond hydration hydrogen membrane by sunrise on 2009-02-24 06:26:31 as
	Hydrogen Bonding Structure and Dynamics of Water at the Dimyristoylphosphatidylcholine Lipid Bilayer Surface from a Molecular Dynamics Simulation [My Copy] J. Phys. Chem. B, Vol. 108, No. 21. (27 May 2004), pp. 6603-6610. by C. F. Lopez, S. O. Nielsen, M. L. Klein, P. B. Moore posted to bond dppc dynamics hydrogen molecular simulations water by sunrise on 2009-02-24 06:26:05 as along with 1 person softsimu
	Distinct Water Species Confined at the Interface of a Phospholipid Membrane [My Copy] Physical Review Letters, Vol. 99, No. 7. (2007) by Victor V. Volkov, Jason D. Palmer, Roberto Righini posted to membrane phospholipid water by sunrise on 2009-02-24 06:19:12 as along with 2 people and 1 group sobolevnrm softsimu baker-group
	Solution Structure of NaNO3 in Water: Diffraction and Molecular Dynamics Simulation Study† [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Tünde Megyes, Szabolcs Bálint, Emanuel Peter, et al.Tamás Grósz, Imre Bakó, Hartmut Krienke, Marie-Claire Bellissent-Funel posted to dynamics molecular simulations water by sunrise on 2009-02-24 05:47:52 as
	New insight into the orientational order of water molecules at the water/1,2-dichloroethane interface: A Monte Carlo simulation study [My Copy] The Journal of Chemical Physics, Vol. 117, No. 5. (2002), pp. 2271-2280. by Pál Jedlovszky, \ árpád Vincze, George Horvai posted to carlo interface monte water by sunrise on 2009-02-20 06:48:42 as
	Properties of water/apolar interfaces as seen from Monte Carlo simulations [My Copy] Journal of Molecular Liquids, Vol. 109, No. 2. (30 January 2004), pp. 99-108. by P. Jedlovszky posted to apolar interface water by sunrise on 2009-02-20 06:43:11 as
	Interfacial properties of water in an extended van der Waals theory [My Copy] The Journal of Chemical Physics, Vol. 108, No. 24. (1998), pp. 10205-10208. by Lothar Mühlbacher posted to der interfacial van waals by sunrise on 2009-02-19 05:27:44 as along with 1 person sas
	Effect of Hydrogen Bonds on the Thermodynamic Behavior of Liquid Water [My Copy] Physical Review Letters, Vol. 73, No. 12. (19 Sep 1994), pp. 1632-1635. by Peter H. Poole, Francesco Sciortino, Tor Grande, H. Eugene Stanley, C. Austen Angell posted to bond hydrogen thermodynamic by sunrise on 2009-02-19 05:27:14 as along with 1 person sas
	Thermal Signature of Hydrophobic Hydration Dynamics [My Copy] J. Am. Chem. Soc. (15 July 2008) by Johan Qvist, Bertil Halle posted to hydration hydrophobic thermal by sunrise on 2009-02-19 05:26:46 as along with 1 person paulschlesinger
	Recent progress in understanding hydrophobic interactions [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 43. (24 October 2006), pp. 15739-15746. by Emily E. Meyer, Kenneth J. Rosenberg, Jacob Israelachvili posted to hydrophobic by sunrise on 2009-02-19 05:24:02 as along with 5 people and 1 group softsimu Cristiano sobolevnrm paulschlesinger hsekiguc baker-group
	The Origin of Long-Range Attraction between Hydrophobes in Water [My Copy] Biophys. J., Vol. 92, No. 2. (15 January 2007), pp. 373-378. by Florin Despa, Stephen R. Berry posted to attraction hydrophobe long-range by sunrise on 2009-02-19 05:23:29 as along with 3 people and 1 group samjlord jwagoner paulschlesinger moernerlab
	Molecular Hydrophobic Attraction and Ion-Specific Effects Studied by Molecular Dynamics [My Copy] Langmuir, Vol. 24, No. 4. (19 February 2008), pp. 1271-1283. by D. Horinek, A. Serr, D. J. Bonthuis, M. Bostrom, W. Kunz, R. R. Netz posted to dynamics hydrophobic molecular simulations by sunrise on 2009-02-19 05:22:50 as along with 2 people and 1 group sobolevnrm mikaellund baker-group
	Water at Hydrophobic Surfaces: When Weaker Is Better [My Copy] J. Am. Chem. Soc. (18 January 2008) by D. K. Hore, D. S. Walker, G. L. Richmond posted to hydrophobic by sunrise on 2009-02-19 05:20:15 as along with 2 people charris5 mikaellund
	Molecular volume, surface area, and curvature dependence of the configurational entropy change upon solvation: effects of molecular bonding [My Copy] Chemical Physics Letters, Vol. 284, No. 3-4. (27 February 1998), pp. 235-246. by S. Shimizu, M. Ikeguchi, S. Nakamura, K. Shimizu posted to configurational entropy solvation by sunrise on 2009-02-19 05:19:52 as along with 1 person dfgreen
	The hydrophobic effect [My Copy] Phys. Chem. Chem. Phys., Vol. 5, No. 15. (2003), pp. 3085-3093. by B. Widom, P. Bhimalapuram, Kenichiro Koga posted to hydrophobic by sunrise on 2009-02-19 05:18:53 as along with 2 people and 1 group softsimu arlam Chang group
	The Mechanism of Hydrophobic Solvation Depends on Solute Radius [My Copy] J. Phys. Chem. B, Vol. 104, No. 6. (17 February 2000), pp. 1326-1331. by N. T. Southall, K. A. Dill posted to hydrophobic solvation by sunrise on 2009-02-19 05:17:18 as along with 2 people dfgreen softsimu
	Effect of Salt on the Dynamics of Aqueous Solution of Hydrophobic Solutes: A Molecular Dynamics Simulation Study† [My Copy] Journal of Chemical & Engineering Data, Vol. 54, No. 2. (12 February 2009), pp. 542-547. by Niharendu Choudhury posted to dynamics hydrophobic molecular simulations by sunrise on 2009-02-19 05:16:34 as along with 1 person carlosjavierna
	A quantitative mean-field theory of the hydrophobic effect of neutral and charged molecules of arbitrary geometry [My Copy] Journal of Experimental and Theoretical Physics, Vol. 101, No. 5. (6 November 2005), pp. 962-977. by G. Sitnikov, S. Nechaev, M. Taran posted to hydrophobic mean-field by sunrise on 2009-02-19 05:11:43 as along with 1 person afenley
	Electrostatic Polarization Effects and Hydrophobic Hydration in Ethanol−Water Solutions from Molecular Dynamics Simulations [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 3. (22 January 2009), pp. 767-778. by Yang Zhong, Sandeep Patel posted to dynamics electric hydration hydrophobic molecular simulations by sunrise on 2009-02-19 03:32:13 as along with 2 people carlosjavierna willard
	Distribution of Binding Energies of a Water Molecule in the Water Liquid−Vapor Interface† [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Shaji Chempath, Lawrence R. Pratt posted to interface vapor water by sunrise on 2009-02-19 03:29:22 as along with 1 person willard
	Static and dynamic correlations in water at hydrophobic interfaces [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20130-20135. by Jeetain Mittal, Gerhard Hummer posted to hydrophobic interface water by sunrise on 2009-02-19 03:28:33 as along with 1 person and 1 group sobolevnrm baker-group
	Hydrophobic interactions: an overview [My Copy] Journal of Physics: Condensed Matter, Vol. 14, No. 40. (2002), pp. 9445-9460. by Pieter R. Wolde posted to hydrophobic by sunrise on 2009-02-19 03:21:44 as along with 3 people softsimu mijam sas
	Hydrogen Bond Dynamics at the Water/Hydrocarbon Interface† [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Janamejaya Chowdhary, Branka M. Ladanyi posted to bond hydrogen hydrophobic interface water-oil by sunrise on 2009-02-19 02:58:09 as along with 2 people willard hugo_martiniano

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hydrophobic	12
water	9
coarse-graining	6
interface	5
molecular	5
simulations	5
dynamics	5
hydrogen	4
bond	4
membrane	3
hydration	3
brownian	2
protein	2
solvation	2
actin	2
apolar	1
entropy	1
der	1
movement	1
phospholipid	1
thermal	1
configurational	1
van	1
waals	1
electric	1
knot	1
long-range	1
hydrophobe	1
myosin	1
martini	1
carlo	1
mean-field	1
dppc	1
rate	1
thermodynamic	1
monte	1
reaction	1
attraction	1
water-oil	1
vapor	1
interfacial	1

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