svenrahmann's library 39 articles Export

	Detecting species-site dependencies in large multiple sequence alignments. [My Copy] Nucleic acids research, Vol. 37, No. 18. (6 October 2009), pp. 5959-5968. by Roland Schwarz, Philipp N. Seibel, Sven Rahmann, et al.Christoph Schoen, Mirja Huenerberg, Clemens Müller-Reible, Thomas Dandekar, Rachel Karchin, Jörg Schultz, Tobias Müller posted to rahmann by svenrahmann on 2009-08-21 20:02:43 as along with 2 people and 1 group davidalee operon Orengo Group Journal Picks
	Next-generation DNA sequencing techniques. [My Copy] New biotechnology, Vol. 25, No. 4. (03 April 2009), pp. 195-203. by Wilhelm J. Ansorge posted to review2009 sequencing by svenrahmann on 2009-05-13 14:05:53 as along with 8 people manduca inesdesantiago heliopais natstreet druvus guhjy n00c ImranRaoufMalik
	Editorial [My Copy] Bioinformatics, Vol. 25, No. 4. (06 January 2009), pp. 429-429. by A. Bateman, J. Quackenbush posted to 1000genomes review2009 sequencing by svenrahmann on 2009-04-28 17:14:14 as along with 8 people seb1 n00c dolchan idoerg orzenil druvus floatingpoint djkt
	MapView: visualization of short reads alignment on a desktop computer. [My Copy] Bioinformatics (Oxford, England) (15 April 2009) by Hua Bao, Hui Guo, Jinwei Wang, Renchao Zhou, Xuemei Lu, Suhua Shi posted to sequencing visualization by svenrahmann on 2009-04-18 13:47:29 as along with 4 people torfinnnome jmeppley robsyme neils
	Many-core algorithms for statistical phylogenetics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1370-1376. by Marc A. Suchard, Andrew Rambaut posted to multicore phylo by svenrahmann on 2009-04-18 13:47:06 as along with 9 people and 1 group mlangill druvus nuin AlexBateman bmajoros djkt jmeppley rdiaz Neeperando iSEEM
	Suffix Arrays: A New Method for On-Line String Searches [My Copy] SIAM Journal on Computing, Vol. 22, No. 5. (1993), pp. 935-948. by Udi Manber, Gene Myers posted to array sequence suffix by svenrahmann on 2009-04-15 14:11:48 as
	Genome-Wide Search for Local DNA Segments with Anomalous GC-Content [My Copy] Journal of Computational Biology, Vol. 16, No. 4. (2009), pp. 555-564. by Andrey Ilatovskiy, Michael Petukhov posted to sequence by svenrahmann on 2009-04-13 10:43:13 as
	ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1424-1425. by You Jung J. Kim, Nikhil Teletia, Victor Ruotti, et al.Christopher A. Maher, Arul M. Chinnaiyan, Ron Stewart, James A. Thomson, Jignesh M. Patel posted to mapping sequencing by svenrahmann on 2009-04-12 11:17:36 as along with 12 people and 2 groups jfr mmartin n00c guhjy nuin idonaldson AlexBateman bmajoros humburg Thaverkamp druvus djkt Bioinformatics Journal picks
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted to mapping sequence sequencing by svenrahmann on 2009-04-12 11:15:58 as along with 33 people and 2 groups joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson rschulz dswan mitko djkt humburg jmeppley coela vagoskar natstreet brianb Neeperando druvus neils KCL & UCL Bioinformatics Bioinformatics
	Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 82. by Bartek Wilczynski, Norbert Dojer, Mateusz Patelak, Jerzy Tiuryn posted to discovery motif regulation by svenrahmann on 2009-04-05 11:41:07 as along with 9 people and 2 groups daveGerrard ilyashl idonaldson maximilianh bmajoros nuin idoerg cisevol dquest cis-regulatory-evolution BergmanLab
	New scoring schema for finding motifs in DNA Sequences [My Copy] BMC Bioinformatics, Vol. 10 (20 March 2009), 93. by Fatemeh, Bahram Goliaei posted to crap discovery motif by svenrahmann on 2009-04-05 11:39:05 as along with 5 people and 1 group cassj idonaldson maximilianh ElenaGrassi nuin cube_and_beyond
	KEGGgraph: a graph approach to KEGG PATHWAY in R and Bioconductor. [My Copy] Bioinformatics (Oxford, England) (23 March 2009) by Jitao David D. Zhang, Stefan Wiemann posted to angebio lecture sysbio by svenrahmann on 2009-04-05 11:35:29 as along with 2 people brianb neils
	CNV-seq, a new method to detect copy number variation using high-throughput sequencing. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 80. by Chao Xie, Martti T. Tammi posted to cnv sequencing by svenrahmann on 2009-04-03 06:11:53 as along with 18 people and 1 group hzoltan biovils stubrown cthachuk GustavoLacerda n00c darian bmenten natstreet sameersoi xiechao semrich pkonings rdiaz dswan sleepingcell neils magusina Bioinformatics
	Markov clustering versus affinity propagation for the partitioning of protein interaction graphs [My Copy] BMC Bioinformatics, Vol. 10 (30 March 2009), 99. by Jim Vlasblom, Shoshana J. Wodak posted to clustering network seminar by svenrahmann on 2009-04-03 06:09:07 as along with 2 people swp09 lwaldron
	Getting Started in Computational Immunology [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000128. by Steven H. Kleinstein posted to immunology by svenrahmann on 2009-04-02 21:56:01 as along with 13 people and 2 groups tomhebbron VGreiff akraemer najwvandijk Zephyrus nuin barry reyez dakelley GeeSharpMinor rebeccamancy AbnerCYH jjray Roswell Cancer Crosstalk Bioinformatics
	Lossless filter for multiple repeats with bounded edit distance [My Copy] Algorithms for Molecular Biology, Vol. 4, No. 1. (30 January 2009), 3. by Pierre Peterlongo, Gustavo Sacomoto, Alair D. Lago, Nadia Pisanti, Marie F. Sagot posted to seminar sequence by svenrahmann on 2009-04-02 21:53:29 as along with 4 people renatocarmo gwallau timflutre druvus
	Evolving DNA motifs to predict GeneChip probe performance [My Copy] Algorithms for Molecular Biology, Vol. 4, No. 1. (19 March 2009), 6. by W. B. Langdon, A. P. Harrison posted to oligos seminar sequence by svenrahmann on 2009-04-02 21:52:42 as
	Biopython: freely available Python tools for computational molecular biology and bioinformatics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1422-1423. by Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, et al.Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon posted to python by svenrahmann on 2009-04-02 21:51:55 as along with 38 people and 9 groups eesruiz Geknitics pekrau Sergey_gerbek hwright jfr karinaecomp applebyb klexa rdiaz FabienneGranier thegoose oteri cmzmasek jwm guhjy AlexBateman daforerog ltitodem Thaverkamp sobolevnrm psique dswan neils dullhunk bertelsen Vincent_Rouilly gwallau brianb jorisslob jmeppley VGreiff sjcockell druvus jago kshameer operon svozil Systems_Biology Computational_Systems_Biology Structural Biology Group TorVergata Journal picks baker-group Bioinformatics Software-Architecture OER_Open_Educational_Resources Method_Engineering_Services
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted to seminar by svenrahmann on 2009-04-02 21:51:23 as along with 14 people and 1 group jfr jandot ewilban1 polivares inesdesantiago djkt behindtherabbit guhjy humburg Thaverkamp jmeppley idonaldson rdiaz paszkows BergmanLab
	Infernal 1.0: inference of RNA alignments. [My Copy] Bioinformatics (Oxford, England) (23 March 2009) by Eric P P. Nawrocki, Diana L L. Kolbe, Sean R R. Eddy posted to algobio lecture sequence by svenrahmann on 2009-04-02 21:50:32 as
	Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (20 March 2009), e1000311. by Chun Ye, Simon J. Galbraith, James C. Liao, Eleazar Eskin posted to lecture network sysbio by svenrahmann on 2009-04-02 21:48:50 as along with 5 people TRHvidsten dolchan idonaldson rdiaz roys
	kk-difference matching in amortized linear time for all the words in a text [My Copy] Theoretical Computer Science, Vol. 410, No. 8-10. (01 March 2009), pp. 983-987. by C. Pizzi posted to lecture motif sequence by svenrahmann on 2009-04-02 21:46:31 as
	Fast neighbor joining☆ [My Copy] Theoretical Computer Science (29 December 2008) by Isaac Elias, Jens Lagergren posted to algobio lecture phylo by svenrahmann on 2009-04-02 21:45:09 as
	The simultaneous consecutive ones problem [My Copy] Theoretical Computer Science (29 December 2008) by Marcus Oswald, Gerhard Reinelt posted to algobio lecture seminar by svenrahmann on 2009-04-02 21:44:31 as
	Polynomial summaries of positive semidefinite kernels [My Copy] Theoretical Computer Science, Vol. 410, No. 19. (28 April 2009), pp. 1847-1862. by Kilho Shin, Tetsuji Kuboyama posted to kernel seminar by svenrahmann on 2009-04-02 21:43:51 as
	On algorithmic analysis of transcriptional regulation by LTL model checking [My Copy] Theoretical Computer Science (27 February 2009) by J. Barnat, L. Brim, I. Černá, S. Dražan, J. Fabriková, D. Šafránek posted to lecture network seminar sysbio by svenrahmann on 2009-04-02 21:42:55 as
	On the similarity metric and the distance metric☆ [My Copy] Theoretical Computer Science, Vol. 410, No. 24-25. (28 May 2009), pp. 2365-2376. by Shihyen Chen, Bin Ma, Kaizhong Zhang posted to distance metric seminar similarity by svenrahmann on 2009-04-02 21:41:55 as along with 2 people jengeldk caicai
	On the Hopcroft’s minimization technique for DFA and DFCA☆ [My Copy] Theoretical Computer Science (05 March 2009) by Andrei Păun, Mihaela Păun, Alfonso Rodríguez-Patón posted to automata seminar sequence by svenrahmann on 2009-04-02 21:40:50 as
	Bio-PEPA: A framework for the modelling and analysis of biological systems [My Copy] Theoretical Computer Science (09 March 2009) by Federica Ciocchetta, Jane Hillston posted to algebra network process seminar by svenrahmann on 2009-04-02 21:39:47 as
	Burrows-Wheeler transform and palindromic richness [My Copy] Theoretical Computer Science (17 March 2009) by Antonio Restivo, Giovanna Rosone posted to seminar sequence by svenrahmann on 2009-04-02 21:39:07 as along with 1 person lianping
	Accelerating Boyer Moore searches on binary texts [My Copy] Theoretical Computer Science (24 March 2009) by Shmuel T. Klein, Kopel posted to seminar sequence by svenrahmann on 2009-04-02 21:38:29 as
	Efficient construction of maximal and minimal representations of motifs of a string☆ [My Copy] Theoretical Computer Science (24 March 2009) by François Nicolas, Veli Mäkinen, Esko Ukkonen posted to seminar sequence by svenrahmann on 2009-04-02 21:38:02 as along with 1 person tmarscha
	Efficient enumeration of words in regular languages [My Copy] Theoretical Computer Science (24 March 2009) by Margareta Ackerman, Jeffrey Shallit posted to seminar sequence by svenrahmann on 2009-04-02 21:37:33 as
	From Nerode’s congruence to suffix automata with mismatches☆ [My Copy] Theoretical Computer Science (24 March 2009) by M. Crochemore, C. Epifanio, A. Gabriele, F. Mignosi posted to seminar sequence by svenrahmann on 2009-04-02 21:37:05 as
	A cache-friendly truncated FFT [My Copy] Theoretical Computer Science (24 March 2009) by David Harvey posted to seminar by svenrahmann on 2009-04-02 21:35:54 as
	Mean and variance of the Gibbs free energy of oligonucleotides in the nearest neighbor model under varying conditions [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2928-2933. by Sven Rahmann, Christine Gräfe posted to oligos statistics by svenrahmann on 2009-04-02 18:06:39 as along with 1 person talponer
	An evaluation of information content as a metric for the inference of putative conserved noncoding regions in DNA sequences using a genetic algorithms approach. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 5, No. 1. (r 2008), pp. 1-14. by C. B. Congdon, J. C. Aman, G. M. Nava, H. R. Gaskins, C. J. Mattingly posted to discovery ea motif by svenrahmann on 2009-04-02 17:45:41 as along with 1 person maximilianh
	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted to discovery motif by svenrahmann on 2009-04-02 17:42:22 as along with 17 people and 2 groups Dulce lusk wowalz isimpson daveGerrard coldmeadow druvus Stew emptyhb dquest nklee maximilianh yevishere csdhwang brant xili03 pradiptaray BergmanLab Bioinformatics - CRUK
	Discovery of sequence motifs related to coexpression of genes using evolutionary computation. [My Copy] Nucleic Acids Res, Vol. 32, No. 13. (2004), pp. 3826-3835. by G. B. Fogel, D. G. Weekes, G. Varga, et al.E. R. Dow, H. B. Harlow, J. E. Onyia, C. Su posted to discovery ea motif by svenrahmann on 2009-04-02 17:40:02 as along with 5 people wowalz lptolik gpalidwor dquest xili03

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svenrahmann's library 39 articles Export

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