svozil's library 237 articles Export

	A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays. [My Copy] J Biomol Screen, Vol. 4, No. 2. (1999), pp. 67-73. by J. H. Zhang, T. D. Chung, K. R. Oldenburg posted to statistics hts by svozil on 2009-10-21 16:40:29 as along with 2 people and 1 group Yanno jxl Bioinformatics
	The RNA structure alignment ontology [My Copy] RNA, Vol. 15, No. 9. (21 September 2009), pp. 1623-1631. by James W. Brown, Amanda Birmingham, Paul E. Griffiths, et al.Fabrice Jossinet, Rym Kachouri-Lafond, Rob Knight, B. Franz Lang, Neocles Leontis, Gerhard Steger, Jesse Stombaugh, Eric Westhof posted to rna ontology bioinformatics alignment by svozil on 2009-08-18 06:15:22 as along with 3 people and 2 groups chrisvanlang ppgardne samgj Bioinformatics Journal picks
	Interaction of DNA with clusters of amino acids in proteins. [My Copy] Nucleic acids research, Vol. 32, No. 14. (2004), pp. 4109-4118. by R. Sathyapriya, Saraswathi Vishveshwara posted to protein-dna graph cation-pi by svozil on 2009-08-17 15:51:13 as along with 1 person and 1 group medic0747 Bioinformatics
	Intermolecular and intramolecular readout mechanisms in protein-DNA recognition. [My Copy] Journal of molecular biology, Vol. 337, No. 2. (19 March 2004), pp. 285-294. by M. Michael Gromiha, Jörg G. Siebers, Samuel Selvaraj, Hidetoshi Kono, Akinori Sarai posted to specificity protein-dna indirect direct by svozil on 2009-08-17 15:18:49 as along with 1 group Bioinformatics
	Nucleic Acid Structure Analysis Mathematics for Local Cartesian and Helical Structure Parameters That Are Truly Comparable Between Structures [My Copy] Journal of Molecular Biology, Vol. 237, No. 1. (17 March 1994), pp. 125-156. by M. Babcock posted to structure dna bioinformatics analysis by svozil on 2009-08-17 08:29:50 as along with 1 group Bioinformatics
	The limits of protein sequence comparison? [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 254-260. by William R. Pearson, Michael L. Sierk posted to sequence review protein comparison bioinformatics by svozil on 2009-08-17 08:25:59 as along with 3 people and 1 group richardbickerton yylin BioNica Bioinformatics
	Where did the BLOSUM62 alignment score matrix come from? [My Copy] Nature biotechnology, Vol. 22, No. 8. (August 2004), pp. 1035-1036. by Sean R. Eddy posted to blosum62 bioinformatics by svozil on 2009-08-17 08:23:46 as along with 7 people and 1 group mcbla ziquje bicko gurkanbebek xiaobeizhao rabio reyez Bioinformatics
	PuReD-MCL: a graph-based PubMed document clustering methodology [My Copy] Bioinformatics, Vol. 24, No. 17. (1 September 2008), pp. 1935-1941. by T. Theodosiou, N. Darzentas, L. Angelis, C. A. Ouzounis posted to bioinformatics document_clustering graph mcl pubmed text-mining by svozil on 2009-07-19 19:19:56 as along with 8 people and 1 group calderonv coela guhjy druvus Gaetan mitko rabio dullhunk Bioinformatics
	Theoretical Comparison between the Gini Index and Information Gain Criteria [My Copy] Annals of Mathematics and Artificial Intelligence, Vol. 41 (2000), pp. 77-93. by Laura E. Raileanu, Kilian Stoffel posted to comparison decision_trees gini information_gain by svozil on 2009-06-11 12:32:42 as along with 1 group Bioinformatics
	Beyond TFIDF weighting for text categorization in the vector space model [My Copy] In In Proceedings of the Proceedings of the 19th International Joint Conference on Artificial Intelligence (IJCAI 2005 (2005), pp. 1130-1135. by Pascal Soucy posted to text-mining by svozil on 2009-06-11 11:51:09 as along with 1 group Bioinformatics
	A vector space model for automatic indexing [My Copy] Commun. ACM, Vol. 18, No. 11. (November 1975), pp. 613-620. by G. Salton, A. Wong, C. S. Yang posted to text-mining by svozil on 2009-06-11 11:42:37 as along with 36 people and 4 groups fer eabait minshady meikipp gavinhoran fordparsons pcchang85 gerold baaic fisherp gilsonline ssn pdlug ville jcampos k12u yas mthomure ianturton taho naufraghi frohike noa codex chirayu_kong ransombriggs tomrowlands Nien diogomartins markymaypo thesis2007 Wurlitzer Tronhus mediallo takeha-e jaychoo Bioinformatics T_lab Adaptive-Web ARTFL
	Recognizing names in biomedical texts: a machine learning approach. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 7. (1 May 2004), pp. 1178-1190. by GuoDong Zhou, Jie Zhang, Jian Su, Dan Shen, ChewLim Tan posted to bioinformatics biomedical ner powerbione text-mining by svozil on 2009-05-26 16:36:31 as along with 4 people and 3 groups henk-cul arafalov irenas farzanehs dbmi-nlp Bioinformatics dbk-lab
	Identifying gene and protein mentions in text using conditional random fields [My Copy] BMC Bioinformatics, Vol. 6, No. Suppl 1. (2005), S6. by Ryan Mcdonald, Fernando Pereira posted to bioinformatics biomedical crf gene ner protein by svozil on 2009-05-26 15:43:13 as along with 6 people and 2 groups robert85 yas bundschu bhaddow johnkork gmonce Bioinformatics generif_paper
	An analysis of statistical term strength and its use in the indexing and retrieval of molecular biology texts. [My Copy] Computers in biology and medicine, Vol. 26, No. 3. (May 1996), pp. 209-222. by W. J. Wilbur, Y. Yang posted to biomedical text-mining by svozil on 2009-05-25 15:15:57 as along with 1 group Bioinformatics
	EDGAR: extraction of drugs, genes and relations from the biomedical literature. [My Copy] Pac Symp Biocomput (2000), pp. 517-528. by T. C. Rindflesch, L. Tanabe, J. N. Weinstein, L. Hunter posted to bioinformatics edgar ner text-mining by svozil on 2009-05-24 20:51:19 as along with 3 people and 2 groups irenas zlu ibuch Bioinformatics dbk-lab
	Ant colony optimization: Introduction and recent trends [My Copy] Physics of Life Reviews, Vol. 2, No. 4. (December 2005), pp. 353-373. by Christian Blum posted to ant_colony review swarm_intelligence tutorial by svozil on 2009-05-21 09:08:43 as along with 4 people and 2 groups pverstra balicea hkaruna lop Bioinformatics macc
	A Review on the Ant Colony Optimization Metaheuristic: Basis, Models and New Trends [My Copy] Mathware & Soft Computing, Vol. 9 (2002), pp. 141-175. by Oscar Cordon, Francisco Herrera, Thomas Stützle posted to ant_colony review swarm_intelligence by svozil on 2009-05-21 09:07:38 as along with 1 group Bioinformatics
	The Ant Colony Optimization Metaheuristic: Algorithms, Applications, and Advances [My Copy] Handbook of Metaheuristics (2003), pp. 250-285. by Marco Dorigo, Thomas Stützle posted to ant_colony swarm_intelligence tutorial by svozil on 2009-05-21 09:05:51 as along with 1 person and 2 groups andreud Bioinformatics Scout/Leader Systems
	An Introduction to Ant Colony Optimization [My Copy] IRIDIA Technical Report Series (2006) by Marc Dorigo, Socha Krzysztof posted to ant_colony swarm_intelligence tutorial by svozil on 2009-05-21 09:03:38 as along with 1 group Bioinformatics
	Ant Colony Optimization – Artificial Ants as a Computational Intelligence Technique [My Copy] IEEE Comput. Intell. Mag, Vol. 1 (2006), pp. 28-39. by Marco Dorigo, Mauro Birattari, Thomas Stützle, Université Libre, De Bruxelles, Av F. D. Roosevelt posted to ant_colony swarm_intelligence tutorial by svozil on 2009-05-21 08:54:18 as along with 1 group Bioinformatics
	Support Vector Machines and Kernels for Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173. by Asa Ben-Hur, Cheng S. Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch posted to bioinformatics svm tutorial by svozil on 2009-05-14 14:21:23 as along with 32 people and 3 groups guhjy VGreiff tomhebbron ucbcjbm thegoose Zephyrus phoenixzxl winterschlaefer kshameer mmartin jfr MarcoAlvarez sobolevnrm Yanno Scis0000002 srp33 GustavoLacerda nuin rdiaz dakelley rschulz Borelli taguchi kristina bayesian chad_davis mdstobbe tny giovenko markchen druvus GeeSharpMinor Bioinformatics baker-group VisionLab
	A tutorial on support vector machines for pattern recognition [My Copy] Data Mining and Knowledge Discovery, Vol. 2 (1998), pp. 121-167. by Christopher J. C. Burges posted to svm tutorial by svozil on 2009-05-12 16:53:41 as along with 6 people and 1 group resilla etidey bgibson robert85 rocksportrocker alexzeh Bioinformatics
	Filter versus wrapper gene selection approaches in DNA microarray domains. [My Copy] Artif Intell Med, Vol. 31, No. 2. (June 2004), pp. 91-103. by I. Inza, P. Larrañaga, R. Blanco, A. J. Cerrolaza posted to bioinformatics comparison feature_selection microarray by svozil on 2009-05-01 12:34:01 as along with 2 people and 1 group chad_davis sdvillal Bioinformatics
	What is a support vector machine? [My Copy] Nature Biotechnology, Vol. 24, No. 12., pp. 1565-1567. by William S. Noble posted to svm tutorial by svozil on 2009-04-30 16:59:05 as along with 13 people and 3 groups NicholasErho megraw flips olberd srp33 Yanno jwm okarsligil ramensky BIBLIOma cerami akastrin frohike Radiation_Damage Stressosome Bioinformatics
	Databases, models, and algorithms for functional genomics: a bioinformatics perspective. [My Copy] Molecular biotechnology, Vol. 29, No. 2. (February 2005), pp. 165-183. by G. B. Singh, H. Singh posted to bioinformatics review sequence by svozil on 2009-04-30 16:56:17 as along with 1 group Bioinformatics
	Classification algorithms for phenotype prediction in genomics and proteomics. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 691-708. by Habtom W. Ressom, Rency S. Varghese, Zhen Zhang, Jianhua Xuan, Robert Clarke posted to bioinformatics classification feature_selection genomics ml pattern proteomics by svozil on 2009-04-30 16:52:56 as along with 6 people and 1 group zufar bertelsen shikin akastrin guhjy giovenko Bioinformatics
	Machine Learning and Its Applications to Biology [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007), e116. by Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Drăghici posted to bioinformatics ml review by svozil on 2009-04-30 16:50:58 as along with 14 people and 3 groups colm rwst winterschlaefer aviad_work druvus giovenko Borelli skhadar julius cjeans asddd ciga nklee kmdaily Bioinformatics SysbioMPI-TCells Computational_Information_Geometry
	Artificial intelligence techniques for bioinformatics. [My Copy] Appl Bioinformatics, Vol. 1, No. 4. (2002), pp. 191-222. by A. Narayanan, E. C. Keedwell, B. Olsson posted to ai bioinformatics decision_trees ga ml nearest-neighbor nn review by svozil on 2009-04-30 16:43:00 as along with 1 person and 1 group gpalidwor Bioinformatics
	Application of Support Vector Machines in Bioinformatics [My Copy] (2002) by Jung-Ying Wang posted to bioinformatics svm thesis by svozil on 2009-04-30 16:36:53 as along with 1 group Bioinformatics
	A Perspective View And Survey Of Meta-Learning [My Copy] Artificial Intelligence Review, Vol. 18 (2002), pp. 77-95. by Ricardo Vilalta, Youssef Drissi posted to data_mining metalearning by svozil on 2009-04-30 08:55:41 as along with 1 group Bioinformatics
	Knowledge discovery in biology and biotechnology texts: a review of techniques, evaluation strategies, and applications. [My Copy] Critical reviews in biotechnology, Vol. 25, No. 1-2. (n 2005), pp. 31-52. by J. Natarajan, D. Berrar, C. J. Hack, W. Dubitzky posted to information_retrieval nlp review text-mining by svozil on 2009-04-22 07:44:06 as along with 2 people and 1 group mitko lmichan Bioinformatics
	The use of domain-specific concepts in biomedical text summarization [My Copy] Information Processing & Management, Vol. 43, No. 6. (November 2007), pp. 1765-1776. by L. Reeve, H. Han, A. Brooks posted to automatic summarization text-mining by svozil on 2009-04-21 10:43:36 as along with 1 group Bioinformatics
	Computational Approaches for Investigating Three-Dimensional Structures of RNA [My Copy] Malaysian Journal of Biochemistry and Molecular Biology, Vol. 16, No. 2. (2008), pp. 1-9. by Mohd Firdaus-Raih posted to bioinformatics graph review rna structure tertiary by svozil on 2009-04-14 19:52:02 as along with 1 group Bioinformatics
	Automated motif extraction and classification in RNA tertiary structures. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 12. (December 2008), pp. 2489-2497. by M. Djelloul, A. Denise posted to bioinformatics mining motif rna structure subgraph tertiary by svozil on 2009-04-14 19:37:54 as along with 1 person and 1 group mhamada Bioinformatics
	Pattern Matching in RNA Structures [My Copy] Bioinformatics Research and Applications (2008), pp. 317-330. by Kejie Li, Reazur Rahman, Aditi Gupta, Prasad Siddavatam, Michael Gribskov posted to bioinformatics matching pattern rna structure subgraph by svozil on 2009-04-14 19:27:40 as along with 1 group Bioinformatics
	Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup. [My Copy] Bioinformatics, Vol. 19 Suppl 1 (2003) by A. S. Yeh, L. Hirschman, A. A. Morgan posted to curation evaluation flybase kdd text-mining by svozil on 2009-04-13 17:38:52 as along with 4 people and 3 groups irenas yas natsu blackbart Bioinformatics dbk-lab T_lab
	BioRAT: extracting biological information from full-length papers [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3206-3213. by David P. A. Corney, Bernard F. Buxton, William B. Langdon, David T. Jones posted to biorat dip full-text gate_toolbox template text-mining by svozil on 2009-04-13 14:37:28 as along with 13 people and 7 groups robert85 cisevol arafalov camster snuppepuppan irenas Enro guhjy A_Olympia helliontroy massivemayhem sobolevnrm satre Bioinformatics BergmanLab Philosophy_of_Information dbk-lab Blog_and_Wiki_Research biomedical-nlp baker-group
	Extraction of biological interaction networks from scientific literature. [My Copy] Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 263-276. by A. Skusa, A. Rüegg, J. Köhler posted to extraction interaction network system_biology text-mining by svozil on 2009-04-10 21:32:37 as along with 2 people and 2 groups yas natsu Bioinformatics T_lab
	Get ready to GO! A biologist's guide to the Gene Ontology. [My Copy] Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 298-304. by J. Lomax posted to gene_ontology go query tutorial by svozil on 2009-04-10 21:30:55 as along with 3 people and 2 groups MarcoAlvarez hubcite irenas Bioinformatics dbk-lab
	Using machine learning to extract drug and gene relationships from text [My Copy] (2004) by Jeffrey T. Chang posted to 0 biomedical drug gene relationship text-mining thesis by svozil on 2009-04-08 10:05:13 as along with 1 group Bioinformatics
	Evaluation of biomedical text-mining systems: lessons learned from information retrieval. [My Copy] Briefings in bioinformatics, Vol. 6, No. 4. (December 2005), pp. 344-356. by William Hersh posted to biomedical evaluation information_retrieval text-mining by svozil on 2009-04-08 09:59:13 as along with 6 people and 1 group artaban421 daforerog lmichan henk-cul aheilbut hpiwowar Bioinformatics
	What makes a gene name? Named entity recognition in the biomedical literature. [My Copy] Brief Bioinform, Vol. 6, No. 4. (December 2005), pp. 357-369. by U. Leser, J. Hakenberg posted to ambiquity gene ner review text-mining by svozil on 2009-04-08 09:56:51 as along with 4 people and 2 groups eesruiz Sjitprasutwit irenas miguel ImagCom - Biomedical Text Computing Bioinformatics
	Gene name ambiguity of eukaryotic nomenclatures. [My Copy] Bioinformatics, Vol. 21, No. 2. (15 January 2005), pp. 248-256. by L. Chen, H. Liu, C. Friedman posted to ambiquity gene ner nlp text-mining by svozil on 2009-04-08 09:54:45 as along with 4 people and 4 groups cisevol snuppepuppan irenas yas Bioinformatics BergmanLab dbk-lab T_lab
	Term identification in the biomedical literature. [My Copy] J Biomed Inform, Vol. 37, No. 6. (December 2004), pp. 512-526. by M. Krauthammer, G. Nenadic posted to biomedical ner review text-mining by svozil on 2009-04-08 08:04:11 as along with 9 people and 5 groups artaban421 cisevol irenas kslibrarian bourne yas bhaddow kkaiser akastrin Bioinformatics BergmanLab dbk-lab T_lab IEG
	Text mining and ontologies in biomedicine: Making sense of raw text [My Copy] Brief Bioinform, Vol. 6, No. 3. (1 January 2005), pp. 239-251. by Irena Spasic, Sophia Ananiadou, John McNaught, Anand Kumar posted to biomedical ontology text-mining by svozil on 2009-04-07 20:46:06 as along with 17 people and 5 groups lmichan tsunol artaban421 daforerog liblab arafalov henk-cul farzanehs lauras irenas andytseng yas hpiwowar helliontroy johnkork daniel_schober yggdrasil Bioinformatics NLP dbk-lab T_lab biomedical-nlp
	Five Steps to Text Mining in Biomedical Literature [My Copy] In Second European Workshop on Data Mining and Text Mining in Bioinformatics (2004) by Brigitte mathiak, Silke eckstein posted to biomedical text-mining by svozil on 2009-04-07 20:42:44 as along with 1 group Bioinformatics
	Genomics and Natural Language Processing [My Copy] Nat Rev Genet, Vol. 3, No. 8. (2002), pp. 601-610. by Mark D. Yandell, William H. Majoros posted to biomedical genomics nlp review text-mining by svozil on 2009-04-06 10:42:53 as along with 5 people and 2 groups bayesian yas jpestian dejori TheresaNiederberger Bioinformatics T_lab
	Getting to the (c)ore of knowledge: mining biomedical literature. [My Copy] Int J Med Inform, Vol. 67, No. 1-3. (4 December 2002), pp. 7-18. by B. de Bruijn, J. Martin posted to biomedical review text-mining by svozil on 2009-04-06 10:41:05 as along with 4 people and 3 groups irenas Enro yas hpiwowar Bioinformatics dbk-lab T_lab
	Extraction of semantic biomedical relations from text using conditional random fields [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 207. by Markus Bundschus, Mathaeus Dejori, Martin Stetter, Volker Tresp, Hans P. Kriegel posted to biomedical crf diseases gene generif relationship text-mining treatment by svozil on 2009-04-05 09:08:36 as along with 9 people and 2 groups artaban421 Scis0000002 Effie ogenex yas guhjy bundschu naegele TheresaNiederberger NaCTeM Bioinformatics
	Biological entity recognition with conditional random fields. [My Copy] AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2008), pp. 293-297. by Y. He, M. Kayaalp posted to abgene bioinformatics biomedical crf metamap ner semrep text-mining umls by svozil on 2009-04-05 09:01:09 as along with 1 group Bioinformatics

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bioinformatics	134
review	48
text-mining	33
rna	22
analysis	20
microarray	20
nmf	17
protein	17
biomedical	16
education	14
protein-rna	13
tutorial	13
protein-na	12
hmm	11
pb	11
book	10
structure	10
contact	9
ner	9
ml	8
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gene_expression	7
spm	7
svm	7
folding	6
genomics	6
grammar	6
motif	6
ant_colony	5
bayes	5
clustering	5
feature_selection	5
gene	5
graph	5
pattern_recognition	5
prediction	5
swarm_intelligence	5
vizualization	5
automata	4
backbone	4
conformation	4
data_mining	4
decision_trees	4
interface	4
ppi	4
protein-dna	4
secondary	4
statistics	4
alphabet	3
classifier	3
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crf	3
dna	3
ensemble	3
evaluation	3
hb	3
information_retrieval	3
integration	3
multidimensional	3
ncrna	3
nearest-neighbor	3
nlp	3
proteomics	3
relationship	3
roc	3
subgraph	3
system_biology	3
ambiquity	2
bigram	2
bohdan	2
database	2
domain	2
entangle	2
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hbplus	2
medical_informatics	2
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nn	2
ontology	2
pattern	2
pca	2
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symbiomatics	2
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thesis	2
web	2
0	1
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ai	1
alex	1
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alignment	1
art	1
automatic	1
binary	1
binding	1
biobliometrics	1
biopython	1
biorat	1
blosum62	1
cancer	1
cation-pi	1
cellular	1
central_dogma	1
cerevisiae	1
cheminformatics	1
coding	1
composition	1
computer_science	1
curation	1
dagsvm	1
dinucleotide	1
dip	1
direct	1
discovery	1
diseases	1
document_clustering	1
doublet	1
drug	1
dynamic_programming	1
edgar	1
flybase	1
fragment	1
full-text	1
fuzzy	1
ga	1
gate_toolbox	1
gems	1
gene_ontology	1
gene_prediction	1
generif	1
gini	1
go	1
hbexplore	1
hpm	1
hts	1
ica	1
identification	1
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ovr	1
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pubchem	1
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rest	1
ribosome	1
rmsda	1
rotameric	1
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scholar	1
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soap	1
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svd	1
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template	1
theory	1
thermodynamics	1
treatment	1
umls	1
unsupervised	1
usability	1
water-mediated	1
web-mining	1
web_server	1

svozil's library 237 articles Export

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