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	Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 12. (11 December 2009), e1000605. by Alexandra M. Schnoes, Shoshana D. Brown, Igor Dodevski, Patricia C. Babbitt posted to sequence protein error bioinformatics annotation by svozil on 2009-12-15 06:03:47 as along with 16 people and 2 groups nlapalu abhishek_tiwari operon kiekyon mjbell farhat engelhardt ppgardne michaelbarton fgibson freesci dullhunk neils TRHvidsten kshameer druvus Bioinformatics Journal picks
	The RNA structure alignment ontology [My Copy] RNA, Vol. 15, No. 9. (21 September 2009), pp. 1623-1631. by James W. Brown, Amanda Birmingham, Paul E. Griffiths, et al.Fabrice Jossinet, Rym Kachouri-Lafond, Rob Knight, B. Franz Lang, Neocles Leontis, Gerhard Steger, Jesse Stombaugh, Eric Westhof posted to rna ontology bioinformatics alignment by svozil on 2009-08-18 06:15:22 as along with 3 people and 2 groups chrisvanlang ppgardne samgj Bioinformatics Journal picks
	Nucleic Acid Structure Analysis Mathematics for Local Cartesian and Helical Structure Parameters That Are Truly Comparable Between Structures [My Copy] Journal of Molecular Biology, Vol. 237, No. 1. (17 March 1994), pp. 125-156. by M. Babcock posted to structure dna bioinformatics analysis by svozil on 2009-08-17 08:29:50 as along with 1 group Bioinformatics
	The limits of protein sequence comparison? [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 254-260. by William R. Pearson, Michael L. Sierk posted to sequence review protein comparison bioinformatics by svozil on 2009-08-17 08:25:59 as along with 3 people and 1 group richardbickerton yylin BioNica Bioinformatics
	Where did the BLOSUM62 alignment score matrix come from? [My Copy] Nature biotechnology, Vol. 22, No. 8. (August 2004), pp. 1035-1036. by Sean R. Eddy posted to blosum62 bioinformatics by svozil on 2009-08-17 08:23:46 as along with 7 people and 1 group mcbla ziquje bicko gurkanbebek xiaobeizhao rabio reyez Bioinformatics
	Support Vector Machines and Kernels for Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173. by Asa Ben-Hur, Cheng S. Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch posted to bioinformatics svm tutorial by svozil on 2009-05-14 14:21:23 as along with 32 people and 3 groups guhjy VGreiff tomhebbron ucbcjbm thegoose Zephyrus phoenixzxl winterschlaefer kshameer mmartin jfr MarcoAlvarez sobolevnrm Yanno Scis0000002 srp33 GustavoLacerda nuin rdiaz dakelley rschulz Borelli taguchi kristina bayesian chad_davis mdstobbe tny giovenko markchen druvus GeeSharpMinor Bioinformatics baker-group VisionLab
	Filter versus wrapper gene selection approaches in DNA microarray domains. [My Copy] Artif Intell Med, Vol. 31, No. 2. (June 2004), pp. 91-103. by I. Inza, P. Larrañaga, R. Blanco, A. J. Cerrolaza posted to bioinformatics comparison feature_selection microarray by svozil on 2009-05-01 12:34:01 as along with 2 people and 1 group chad_davis sdvillal Bioinformatics
	Databases, models, and algorithms for functional genomics: a bioinformatics perspective. [My Copy] Molecular biotechnology, Vol. 29, No. 2. (February 2005), pp. 165-183. by G. B. Singh, H. Singh posted to bioinformatics review sequence by svozil on 2009-04-30 16:56:17 as along with 1 group Bioinformatics
	Classification algorithms for phenotype prediction in genomics and proteomics. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 691-708. by Habtom W. Ressom, Rency S. Varghese, Zhen Zhang, Jianhua Xuan, Robert Clarke posted to bioinformatics classification feature_selection genomics ml pattern proteomics by svozil on 2009-04-30 16:52:56 as along with 6 people and 1 group zufar bertelsen shikin akastrin guhjy giovenko Bioinformatics
	Machine Learning and Its Applications to Biology [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007), e116. by Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Drăghici posted to bioinformatics ml review by svozil on 2009-04-30 16:50:58 as along with 15 people and 3 groups vingron colm rwst winterschlaefer aviad_work druvus giovenko Borelli skhadar julius cjeans asddd ciga nklee kmdaily Bioinformatics SysbioMPI-TCells Computational_Information_Geometry
	Application of Support Vector Machines in Bioinformatics [My Copy] (2002) by Jung-Ying Wang posted to bioinformatics svm thesis by svozil on 2009-04-30 16:36:53 as along with 1 group Bioinformatics
	Computational Approaches for Investigating Three-Dimensional Structures of RNA [My Copy] Malaysian Journal of Biochemistry and Molecular Biology, Vol. 16, No. 2. (2008), pp. 1-9. by Mohd Firdaus-Raih posted to bioinformatics graph review rna structure tertiary by svozil on 2009-04-14 19:52:02 as along with 1 group Bioinformatics
	Automated motif extraction and classification in RNA tertiary structures. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 12. (December 2008), pp. 2489-2497. by M. Djelloul, A. Denise posted to bioinformatics mining motif rna structure subgraph tertiary by svozil on 2009-04-14 19:37:54 as along with 1 person and 1 group mhamada Bioinformatics
	Pattern Matching in RNA Structures [My Copy] Bioinformatics Research and Applications (2008), pp. 317-330. by Kejie Li, Reazur Rahman, Aditi Gupta, Prasad Siddavatam, Michael Gribskov posted to bioinformatics matching pattern rna structure subgraph by svozil on 2009-04-14 19:27:40 as along with 1 group Bioinformatics
	Medical informatics and bioinformatics: a bibliometric study. [My Copy] IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society, Vol. 11, No. 3. (May 2007), pp. 237-243. by J. Y. Bansard, D. Rebholz-Schuhmann, G. Cameron, et al.D. Clark, E. van Mulligen, E. Beltrame, E. Barbolla, Del Hoyo d. e. l. . H. Martin-Sanchez, L. Milanesi, I. Tollis, J. van der Lei, J. L. Coatrieux posted to analysis bigram biobliometrics bioinformatics medical_informatics symbiomatics by svozil on 2009-04-04 21:39:45 as along with 5 people and 1 group artaban421 lmichan dullhunk hpiwowar Gaetan Bioinformatics
	Analysis and prediction of protein local structure based on structure alphabets. [My Copy] Proteins, Vol. 72, No. 1. (July 2008), pp. 163-172. by Q. Dong, X. Wang, L. Lin, Y. Wang posted to alphabet analysis bioinformatics pb protein by svozil on 2009-03-31 15:40:39 as
	Evaluation of local structure alphabets based on residue burial. [My Copy] Proteins, Vol. 55, No. 3. (15 May 2004), pp. 508-518. by R. Karchin, M. Cline, K. Karplus posted to alphabet bioinformatics evaluation pb protein by svozil on 2009-03-31 15:32:20 as along with 1 person marti
	Assessing a novel approach for predicting local 3D protein structures from sequence. [My Copy] Proteins, Vol. 62, No. 4. (1 March 2006), pp. 865-880. by C. Benros, A. G. de Brevern, C. Etchebest, S. Hazout posted to alex bioinformatics fragment hpm library pb protein by svozil on 2009-03-31 15:29:15 as
	Structural Alphabets for Protein Structure Classification: A Comparison Study [My Copy] Journal of Molecular Biology (25 December 2008) by Q. Le, G. Pollastri, P. Koehl posted to alphabet bioinformatics hmm pb protein roc structure svm by svozil on 2009-03-29 11:36:13 as along with 4 people and 2 groups zwang idoerg barry reyez structural_bioinformatics Bioinformatics
	Singular Value Decomposition and Principal Component Analysis [My Copy] (3 Mar 2003) by Michael E. Wall, Andreas Rechtsteiner, Luis M. Rocha posted to bioinformatics gene_expression microarray pca svd tutorial by svozil on 2009-03-27 16:53:18 as along with 12 people hjayaweera rramirezp pdlug elsantosneto stanley mystery sdvillal sugarexpletive kklo rspeer zambujo AbnerCYH
	A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis [My Copy] Bioinformatics In Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 631-643. by Alexander Statnikov, Constantin F. Aliferis, Ioannis Tsamardinos, Douglas Hardin, Shawn Levy posted to bioinformatics cancer classification dagsvm gems gene_expression mc-svm microarray ovo ovr svm by svozil on 2009-03-27 16:44:08 as along with 8 people aviad_work chad_davis archroad dimatura kallberg srp33 slevy03 vmsr
	Statistical analysis of RNA backbone. [My Copy] IEEE/ACM Trans Comput Biol Bioinform, Vol. 3, No. 1. (r 2006), pp. 33-46. by E. Hershkovitz, G. Sapiro, A. Tannenbaum, L. D. Williams posted to backbone bioinformatics conformation rna by svozil on 2009-03-25 14:40:18 as along with 2 people dgront emidio_capriotti
	RNA backbone is rotameric. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 13904-13909. by L. J. Murray, W. B. Arendall, D. C. Richardson, J. S. Richardson posted to backbone bioinformatics conformation rna rotameric by svozil on 2009-03-25 13:42:29 as along with 3 people and 3 groups reyez marcius condon beta BioinfoCIPF SGU-CIPF
	RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution). [My Copy] RNA (New York, N.Y.), Vol. 14, No. 3. (March 2008), pp. 465-481. by J. S. Richardson, B. Schneider, L. W. Murray, et al.G. J. Kapral, R. M. Immormino, J. J. Headd, D. C. Richardson, D. Ham, E. Hershkovits, L. D. Williams, K. S. Keating, A. M. Pyle, D. Micallef, J. Westbrook, H. M. Berman, posted to backbone bioinformatics bohdan conformation rna roc by svozil on 2009-03-25 13:40:42 as along with 1 person reyez
	RNA conformational classes. [My Copy] Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677. by B. Schneider, Z. Morávek, H. M. Berman posted to backbone bioinformatics bohdan conformation rna by svozil on 2009-03-25 13:39:03 as along with 2 people and 2 groups marcius emidio_capriotti BioinfoCIPF SGU-CIPF
	Microarray data analysis: from disarray to consolidation and consensus. [My Copy] Nature reviews. Genetics, Vol. 7, No. 1. (01 January 2006), pp. 55-65. by David B. Allison, Xiangqin Cui, Grier P. Page, Mahyar Sabripour posted to analysis bioinformatics gene_expression microarray by svozil on 2009-03-23 20:37:46 as along with 31 people and 3 groups stharward antonkratz ipark-kaist bertelsen Stew daforerog winterschlaefer verdicchio guhjy barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura heliopais shikin minostro giovenko jo_davies aviad_work Bioinformatics - CRUK structural_bioinformatics Bioinformatics
	Knowledge - based Gene Expression Classification via Matrix Factorization. [My Copy] Bioinformatics (Oxford, England) (5 June 2008) by R Schachtner, D Lutter, P Knollmüller, et al.A M M. Tomé, F J J. Theis, G Schmitz, M Stetter, P Gómez G. Vilda, E W W. Lang posted to bioinformatics gene_expression ica microarray nmf by svozil on 2009-03-23 20:19:34 as along with 2 people jfr ptrobajo
	Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis [My Copy] Bioinformatics, Vol. 23, No. 12. (15 June 2007), pp. 1495-1502. by Hyunsoo Kim, Haesun Park posted to bioinformatics microarray nmf sparse by svozil on 2009-03-23 20:17:07 as along with 7 people vingron nliu82 engelhardt tmmurali dragonrez aviad_work shigepong
	Biopython: freely available Python tools for computational molecular biology and bioinformatics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1422-1423. by Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, et al.Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon posted to bioinformatics biopython by svozil on 2009-03-21 11:58:12 as along with 40 people and 9 groups agomez akou eesruiz Geknitics pekrau Sergey_gerbek hwright jfr karinaecomp applebyb klexa rdiaz FabienneGranier thegoose oteri cmzmasek jwm guhjy AlexBateman daforerog ltitodem Thaverkamp sobolevnrm psique dswan neils dullhunk bertelsen Vincent_Rouilly gwallau brianb jorisslob svenrahmann jmeppley VGreiff sjcockell druvus jago kshameer operon Systems_Biology Computational_Systems_Biology Structural Biology Group TorVergata Journal picks baker-group Bioinformatics Software-Architecture OER_Open_Educational_Resources Method_Engineering_Services
	Statistical Challenges in Functional Genomics [My Copy] Statistical Science, Vol. 18, No. 1. (2003), pp. 33-60. by Paola Sebastiani, Emanuela Gussoni, Isaac S. Kohane, Marco F. Ramoni posted to bioinformatics genomics microarray review statistics by svozil on 2009-03-11 05:22:32 as
	A primer on gene expression and microarrays for machine learning researchers [My Copy] Journal of Biomedical Informatics, Vol. 37, No. 4. (August 2004), pp. 293-303. by W. Kuo, E. Kim, J. Trimarchi, T. Jenssen, S. Vinterbo, L. Ohnomachado posted to bioinformatics microarray ml review by svozil on 2009-03-10 20:04:03 as along with 1 person stharward
	Graph-based methods for analysing networks in cell biology. [My Copy] Briefings in bioinformatics, Vol. 7, No. 3. (1 September 2006), pp. 243-255. by Tero Aittokallio, Benno Schwikowski posted to bioinformatics cellular graph network review system_biology by svozil on 2009-03-10 17:32:01 as along with 12 people and 2 groups frohike daforerog abhishek_tiwari ajbattle cswinburne yaredo barry tmmurali aswin grahamc jmarcelino iris_2001 structural_bioinformatics Bioinformatics
	Penalized feature selection and classification in bioinformatics [My Copy] Brief Bioinform, Vol. 9, No. 5. (1 September 2008), pp. 392-403. by Shuangge Ma, Jian Huang posted to bioinformatics classification feature_selection pattern_recognition review supervised by svozil on 2009-03-10 17:28:25 as along with 7 people kshameer bertelsen VGreiff sona jfr guhjy neils
	Emergent unsupervised clustering paradigms with potential application to bioinformatics. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 677-690. by David J. Miller, Yue Wang, George Kesidis posted to bioinformatics classification clustering microarray pattern_recognition review unsupervised by svozil on 2009-03-10 17:09:29 as along with 6 people meanerelk marti bozdagd bertelsen VGreiff dps
	The computational linguistics of biological sequences [My Copy] (1993), pp. 47-120. by David B. Searls posted to automata bioinformatics grammar review sequence by svozil on 2009-03-09 17:06:06 as
	Probabilistic finite-state machines--part II. [My Copy] IEEE transactions on pattern analysis and machine intelligence, Vol. 27, No. 7. (July 2005), pp. 1026-1039. by E. Vidal, F. Thollard, C. de la Higuera, F. Casacuberta, R. C. Carrasco posted to automata bioinformatics grammar hmm by svozil on 2009-03-09 17:03:12 as
	Probabilistic finite-state machines--part I. [My Copy] IEEE transactions on pattern analysis and machine intelligence, Vol. 27, No. 7. (July 2005), pp. 1013-1025. by E. Vidal, F. Thollard, C. de la Higuera, F. Casacuberta, R. C. Carrasco posted to automata bioinformatics grammar hmm by svozil on 2009-03-09 17:02:58 as
	ROC analysis: applications to the classification of biological sequences and 3D structures [My Copy] Brief Bioinform (11 January 2008), bbm064. by Paolo Sonego, Andras Kocsor, Sandor Pongor posted to bioinformatics classification review roc by svozil on 2009-03-09 16:59:14 as along with 4 people cjeans neils nklee spsdigest
	What is a hidden Markov model? [My Copy] Nature Biotechnology, Vol. 22, No. 10. (01 October 2004), pp. 1315-1316. by S. R. Eddy posted to bioinformatics hmm tutorial by svozil on 2009-03-09 16:53:50 as along with 18 people and 1 group GustavoLacerda n00c darian dfdong orzenil Yanno flips hpaces mjoach skumagai gulkur brian aprasad indigoviolet timflutre berthoums mailund dullhunk EisenLab
	Hidden Markov models. [My Copy] Curr Opin Struct Biol, Vol. 6, No. 3. (June 1996), pp. 361-365. by S. R. Eddy posted to analysis bioinformatics hmm profile sequence by svozil on 2009-03-09 16:51:49 as along with 5 people gulkur bayesian chad_davis rabio suizan
	Grammatical inference in bioinformatics. [My Copy] IEEE transactions on pattern analysis and machine intelligence, Vol. 27, No. 7. (July 2005), pp. 1051-1062. by Y. Sakakibara posted to bioinformatics grammar hmm prediction sequence by svozil on 2009-03-09 16:48:51 as
	Hidden Markov Models for prediction of protein features. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 413 (2008), pp. 173-198. by C. Bystroff, A. Krogh posted to bioinformatics hmm prediction protein review structure by svozil on 2009-03-09 07:58:12 as
	An introduction to hidden Markov models. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Appendix 3 (June 2007) by B. Schuster-Böckler, A. Bateman posted to bioinformatics hmm tutorial by svozil on 2009-03-09 07:55:08 as along with 2 people flips hpaces
	Hidden Markov Models, grammars, and biology: a tutorial. [My Copy] J Bioinform Comput Biol, Vol. 3, No. 2. (April 2005), pp. 491-526. by S. Mukherjee, S. Mitra posted to analysis bioinformatics grammar hmm sequence tutorial by svozil on 2009-03-07 12:58:53 as along with 4 people flips hpaces Ayest berthoums
	Computational approaches to gene prediction. [My Copy] J Microbiol, Vol. 44, No. 2. (April 2006), pp. 137-144. by J. H. Do, D. K. Choi posted to analysis bioinformatics dynamic_programming gene_prediction hmm sequence by svozil on 2009-03-07 12:55:43 as along with 3 people and 1 group jmartin49 indigoviolet GustavoLacerda EisenLab
	Experience using web services for biological sequence analysis. [My Copy] Briefings in bioinformatics, Vol. 9, No. 6. (11 November 2008), pp. 493-505. by Heinz Stockinger, Teresa Attwood, Shahid Nadeem N. Chohan, et al.Richard Côté, Philippe Cudré-Mauroux, Laurent Falquet, Pedro Fernandes, Robert D. Finn, Taavi Hupponen, Eija Korpelainen, Alberto Labarga, Aurelie Laugraud, Tania Lima, Evangelos Pafilis, Marco Pagni, Steve Pettifer, Isabelle Phan, Nazim Rahman posted to bioinformatics rest sequence service soap web by svozil on 2009-03-03 07:15:21 as along with 13 people and 1 group daforerog pekrau behindtherabbit dswan allysonlister alaninmcr jmeppley Cortel kshameer guhjy druvus dullhunk nuin Bioinformatics
	Better Bioinformatics Through Usability Analysis. [My Copy] Bioinformatics (Oxford, England) (9 December 2008) by Davide Bolchini, Anthony Finkelstein, Vito Perrone, Sylvia Nagl posted to bioinformatics database navigation service usability web by svozil on 2009-03-03 07:08:10 as along with 21 people and 1 group pekrau FabienneGranier guhjy pkonings dbk rmhirsk niallhaslam renatomilani chrisamiller Yanno fgibson zimbo1 druvus allysonlister dswan behindtherabbit neils dullhunk sjcockell nuin jmeppley Bioinformatics
	Probabilistic Modelling in Bioinformatics and Medical Informatics [My Copy] (01 December 2004) by D. Husmeier, R. Dybowski, S. Roberts posted to bayes bioinformatics book by svozil on 2009-03-02 21:28:07 as along with 2 people wnpx naegele
	Fundamentals of Data Mining in Genomics and Proteomics [My Copy] (19 December 2006) posted to bioinformatics book data_mining genomics proteomics by svozil on 2009-03-02 08:13:35 as along with 1 person imrchen
	Advanced Analysis of Gene Expression Microarray Data (Science, Engineering, and Biology Informatics) [My Copy] (27 June 2006) by Aidong Zhang posted to bioinformatics book microarray statistics by svozil on 2009-03-02 07:58:02 as along with 1 person akastrin

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