swp09's library 70 articles Export

	Systematic identification of functional orthologs based on protein network comparison [My Copy] Genome Research, Vol. 16, No. 3. (1 March 2006), pp. 428-435. by Sourav Bandyopadhyay, Roded Sharan, Trey Ideker posted to network orthology yeast by swp09 on 2009-05-22 15:16:35 as along with 6 people cerca kiekyon j3xucite koller iris_2001 carlk
	The HSA domain binds nuclear actin-related proteins to regulate chromatin-remodeling ATPases [My Copy] Nature Structural & Molecular Biology, Vol. 15, No. 5. (13 April 2008), pp. 469-476. by Heather Szerlong, Kaede Hinata, Ramya Viswanathan, Hediye Erdjument-Bromage, Paul Tempst, Bradley R. Cairns posted to arp domains hsa by swp09 on 2009-05-22 09:57:40 as
	BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data [My Copy] Mol Biol Evol, Vol. 14, No. 7. (1 July 1997), pp. 685-695. by O. Gascuel posted to bionj evolution phylogeny by swp09 on 2009-05-19 17:11:42 as along with 6 people vingron BioNica lizbiogen timflutre Haggan matsen
	Protein interaction maps for complete genomes based on gene fusion events [My Copy] Nature, Vol. 402, No. 6757. (04 November 1999), pp. 86-90. by Anton J. Enright, Ioannis Iliopoulos, Nikos C. Kyrpides, Christos A. Ouzounis posted to domains fusion by swp09 on 2009-05-19 15:28:07 as along with 6 people jperkins balajis ruvido selrac carlk iris_2001
	The Origins and Evolution of Eukaryotic Proteins [My Copy] Philosophical Transactions: Biological Sciences, Vol. 349, No. 1329. (1995), pp. 235-240. by Russell F. Doolittle posted to domains evolution human paralogs yeast by swp09 on 2009-05-19 15:27:00 as
	Tracing the evolution of a large protein complex in the eukaryotes, NADH:ubiquinone oxidoreductase (Complex I). [My Copy] J Mol Biol, Vol. 348, No. 4. (13 May 2005), pp. 857-870. by T. Gabaldón, D. Rainey, M. A. Huynen posted to complex1 evolution by swp09 on 2009-05-19 15:17:48 as along with 2 people matzke bjorns
	Mitochondrial complex I deficiency: from organelle dysfunction to clinical disease. [My Copy] by F. Distelmaier, W. J. Koopman, L. P. van den Heuvel, et al.R. J. Rodenburg, E. Mayatepek, P. H. Willems, Smeitink posted to no-tag by swp09 on 2009-05-15 11:27:35 as
	mTOR and the control of whole body metabolism. [My Copy] by P. Polak, Hall posted to no-tag by swp09 on 2009-05-15 11:22:52 as
	Overview of the Cell Cycle [My Copy] by Michele S. Park, Andrew Koff posted to no-tag by swp09 on 2009-05-15 11:21:35 as
	The multiplicity of domains in proteins. [My Copy] Annu Rev Biochem, Vol. 64 (1995), pp. 287-314. by R. F. Doolittle posted to duplication evolution fusion multi-domain by swp09 on 2009-05-15 10:24:59 as along with 3 people and 2 groups ana barry dlr structural_bioinformatics Bioinformatics
	An insight into domain combinations. [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001) by G. Apic, J. Gough, S. A. Teichmann posted to domains structure by swp09 on 2009-05-14 19:29:58 as along with 4 people wiedenhoeft choonpeng cjeans gulkur
	Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions. [My Copy] Journal of molecular biology, Vol. 362, No. 4. (29 September 2006), pp. 861-875. by R. Jothi, P. F. Cherukuri, A. Tasneem, T. M. Przytycka posted to evolution structure by swp09 on 2009-05-14 09:05:00 as along with 5 people chica marti choonpeng grahamc iris_2001
	Public web-based services from the European Bioinformatics Institute. [My Copy] Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004) by N. Harte, V. Silventoinen, E. Quevillon, et al.S. Robinson, K. Kallio, X. Fustero, P. Patel, P. Jokinen, R. Lopez posted to ebi by swp09 on 2009-05-13 20:22:37 as along with 1 person moborg
	Clustering Gene Expression Patterns [My Copy] (November 1998) by Amir Ben-Dor, Zohar Yakhini posted to no-tag by swp09 on 2009-05-13 16:15:25 as
	On Finding Graph Clusterings with Maximum Modularity [My Copy] (28 February 2007) by Ulrik Brandes, Daniel Delling, Marco Gaertler, et al.Robert Görke, Martin Hoefer, Zoran Nikoloski, Dorothea Wagner posted to no-tag by swp09 on 2009-05-13 11:21:15 as
	Finding and evaluating community structure in networks [My Copy] (11 August 2003) by M. E. J. Newman, M. Girvan posted to no-tag by swp09 on 2009-05-13 11:00:31 as along with 36 people and 11 groups RayRa almadana dakelley phauly korakot shelleylyn breyten schaal ldietz shivaram bj lfriedl eyliu Peterfine entropy fukken bigbossman hamasaki nojhan dbatorski azygmunt adriandefroment Guff32 abonchen andreacapocci jmarcelino salvoscellato jasonn AnneB HenryR theus apwesolowski dpf kubyaddi mpotamias jmchauvet Philosophy_of_Information Blog_and_Wiki_Research SRA_at_IRST kdl aLifeComplexSys EvolutionaryComputation ComplexAdaptiveSystems Metaheuristics Optimization ilps AGH-IISG
	Clustering gene expression patterns. [My Copy] J Comput Biol, Vol. 6, No. 3-4. (r 1999), pp. 281-297. by A. Ben-Dor, R. Shamir, Z. Yakhini posted to no-tag by swp09 on 2009-05-13 10:30:47 as along with 2 people wiedenhoeft srfairclough
	Graph clustering [My Copy] Computer Science Review, Vol. 1, No. 1. (August 2007), pp. 27-64. by Schaeffer, Satu Elisa posted to no-tag by swp09 on 2009-05-13 10:28:03 as along with 8 people and 1 group stharward wiedenhoeft roys pbellec saket bertuol qwermish AbnerCYH The Cyclops Group
	A fast multilevel algorithm for graph clustering and community detection [My Copy] (16 Jul 2007) by Hristo Djidjev posted to no-tag by swp09 on 2009-05-13 10:27:19 as along with 4 people and 1 group wiedenhoeft bigbossman AbnerCYH Scis0000002 CSBBGraphTheory
	A partitional clustering algorithm validated by a clustering tendency index based on graph theory [My Copy] Pattern Recognition, Vol. 39, No. 5. (May 2006), pp. 776-788. by Bras, Paula Brito, Pinto posted to no-tag by swp09 on 2009-05-13 10:26:51 as along with 2 people wiedenhoeft xtizon
	A Multi-Level Algorithm For Partitioning Graphs [My Copy] In Supercomputing (1995) by Bruce Hendrickson, Robert W. Leland posted to no-tag by swp09 on 2009-05-13 10:26:06 as along with 3 people wiedenhoeft sychan michaelbussmann
	A graph partitioning algorithm by node separators [My Copy] ACM Trans. Math. Softw., Vol. 15, No. 3. (September 1989), pp. 198-219. by Joseph W. H. Liu posted to no-tag by swp09 on 2009-05-13 10:24:58 as along with 2 people wiedenhoeft vannevarvision
	Graph Partitioning and Continuous Quadratic Programming [My Copy] SIAM Journal on Discrete Mathematics, Vol. 12, No. 4. (1999), pp. 500-523. by William W. Hager, Yaroslav Krylyuk posted to no-tag by swp09 on 2009-05-13 10:23:08 as along with 2 people wiedenhoeft mbaric
	Communities in Graphs [My Copy] Innovative Internet Community Systems (2003), pp. 139-154. by Michael Brinkmeier posted to no-tag by swp09 on 2009-05-13 10:21:51 as along with 1 person wiedenhoeft
	A combinatorial algorithm for minimizing symmetric submodular functions [My Copy] In SODA '95: Proceedings of the sixth annual ACM-SIAM symposium on Discrete algorithms (1995), pp. 98-101. by Maurice Queyranne posted to no-tag by swp09 on 2009-05-13 10:17:56 as along with 1 person wiedenhoeft
	NOTUNG: a program for dating gene duplications and optimizing gene family trees. [My Copy] by K. Chen, D. Durand, M. Farach-Colton posted to no-tag by swp09 on 2009-05-12 14:55:08 as
	Evolution of protein domain promiscuity in eukaryotes [My Copy] Genome Res. (29 January 2008), gr.6943508. by Malay K. Basu, Liran Carmel, Igor B. Rogozin, Eugene V. Koonin posted to domains multi-domain by swp09 on 2009-05-12 13:44:26 as along with 10 people druvus kshameer saket cmzmasek michC neils grahamc zwang carlk dchughes
	Domain Architecture Comparison for Multidomain Homology Identification [My Copy] Journal of Computational Biology, Vol. 14, No. 4. (2007), pp. 496-516. by N. Song, R. D. Sedgewick, D. Durand posted to domain_distance domains multi-domain by swp09 on 2009-05-12 13:18:27 as
	Domain Rearrangements in Protein Evolution [My Copy] Journal of Molecular Biology, Vol. 353, No. 4. (04 November 2005), pp. 911-923. by Åsa K. Björklund, Diana Ekman, Sara Light, Johannes Frey-Skött, Arne Elofsson posted to domains evolution by swp09 on 2009-05-12 12:56:23 as along with 3 people jameswasmuth wiedenhoeft tny
	Identification of protein-protein interactions by mass spectrometry coupled techniques. [My Copy] by M. Abu-Farha, F. Elisma, D. Figeys posted to no-tag by swp09 on 2009-05-12 10:57:54 as
	The yeast two-hybrid system and its role in drug discovery. [My Copy] by N. Lentze, D. Auerbach posted to yeast-two-hybrid by swp09 on 2009-05-12 10:54:35 as
	MINT: the Molecular INTeraction database. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (12 January 2007), pp. D572-574. by Chatr-Aryamontri, Andrew, Ceol, et al. Arnaud, Palazzi, Luisa Montecchi, Nardelli, Giuliano, Schneider, Maria Victoria, Castagnoli, Luisa, Cesareni, Gianni posted to database by swp09 on 2009-05-11 17:14:41 as along with 4 people aceol jperkins guhjy cerca
	Clustering by Passing Messages Between Data Points [My Copy] Science, Vol. 315 (2007), pp. 972-976. by Brendan J. Frey, Delbert Dueck posted to no-tag by swp09 on 2009-05-11 12:20:23 as
	Markov clustering versus affinity propagation for the partitioning of protein interaction graphs [My Copy] BMC Bioinformatics, Vol. 10 (30 March 2009), 99. by Jim Vlasblom, Shoshana J. Wodak posted to no-tag by swp09 on 2009-05-11 12:11:55 as along with 2 people lwaldron svenrahmann
	Human Protein Reference Database--2009 update. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (6 January 2009), gkn892. by Keshava T. S. Prasad, Renu Goel, Kumaran Kandasamy, et al.Shivakumar Keerthikumar, Sameer Kumar, Suresh Mathivanan, Deepthi Telikicherla, Rajesh Raju, Beema Shafreen, Abhilash Venugopal, Lavanya Balakrishnan, Arivusudar Marimuthu, Sutopa Banerjee, Devi S. Somanathan, Aimy Sebastian, Sandhya Rani, Somak Ray, Harrys C. J. Kishore, Sashi Kanth, Mukhtar Ahmed, Manoj K. Kashyap, Riaz Mohmood, Y. L. Ramachandra, V. Krishna, Abdul B. Rahiman, Sujatha Mohan, Prathibha Ranganathan, Subhashri Ramabadran, Raghothama Chaerkady, Akhilesh Pandey posted to database human by swp09 on 2009-05-11 10:37:30 as along with 7 people shikin marti ipark-kaist diamantis sjcockell mpitman renatomilani
	Graph Clustering and Minimum Cut Trees [My Copy] Internet Mathematics, Vol. 1, No. 4. (23 September 2003), pp. 385-408. by Gary W. Flake, Robert E. Tarjan, Kostas Tsioutsiouliklis posted to no-tag by swp09 on 2009-05-11 10:10:44 as
	Building a knowledge base for systems pathology [My Copy] Brief. Bioinformatics Advance Access (November 2008), pp. 518-531. by H. Michael, J. Hogan, A. Kel, et al.O. Kel-Margoulis, F. Schacherer, N. Voss, E. Wingender posted to biobase by swp09 on 2009-05-10 15:21:06 as
	Integr8 and Genome Reviews: integrated views of complete genomes and proteomes [My Copy] Nucleic Acids Research, Vol. 33, No. Supplement 1. (1 January 2005), D297. by Paul Kersey, Lawrence Bower, Lorna Morris, et al.Alan Horne, Robert Petryszak, Carola Kanz, Alexander Kanapin, Ujjwal Das, Karine Michoud, Isabelle Phan, Alexandre Gattiker, Tamara Kulikova, Nadeem Faruque, Karyn Duggan, Peter Mclaren, Britt Reimholz, Laurent Duret, Simon Penel, Ingmar Reuter, Rolf Apweiler posted to integr8 by swp09 on 2009-05-10 14:42:37 as
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted to blast psi-blast by swp09 on 2009-05-10 12:31:48 as along with 68 people and 5 groups rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite kgutwin mcbla cpwardell johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM References for 3DSim paper EisenLab biomedical-nlp Microbial-Ecology Plantandetc
	Tandem affinity purification and identification of protein complex components [My Copy] Methods, Vol. 33, No. 3. (July 2004), pp. 239-244. by K. Gould posted to purification tandem_affinity by swp09 on 2009-05-10 12:28:30 as along with 1 person sandersl
	Histone H2A.Z and homologues of components of the SWR1 complex are required to control immunity in Arabidopsis [My Copy] The Plant Journal, Vol. 53, No. 3. (February 2008), pp. 475-487. by March-Diaz, Rosana, Garcia-Dominguez, et al. Mario, Lozano-Juste, Jorge, Leon, Jose, Florencio, J. Francisco, Reyes, C. Jose posted to cerevisiae comparison human melanogaster pombe thaliana by swp09 on 2009-05-10 12:21:51 as
	The INO80 Protein Controls Homologous Recombination in Arabidopsis thaliana [My Copy] Molecular Cell, Vol. 16, No. 3. (05 November 2004), pp. 479-485. by Olivier Fritsch, Giovanna Benvenuto, Chris Bowler, Jean Molinier, Barbara Hohn posted to cerevisiae comparison human melanogaster pombe thaliana by swp09 on 2009-05-10 12:19:40 as
	The Arabidopsis thaliana SNF2 homolog AtBRM controls shoot development and flowering [My Copy] Development, Vol. 131, No. 20. (15 October 2004), pp. 4965-4975. by Sara Farrona, Lidia Hurtado, John L. Bowman, Jose C. Reyes posted to cerevisiae comparison human melanogaster pombe thaliana by swp09 on 2009-05-10 12:18:53 as
	The putative SWI/SNF complex subunit BRAHMA activates flower homeotic genes in Arabidopsis thaliana [My Copy] Plant Molecular Biology, Vol. 62, No. 1. (1 September 2006), pp. 291-304. by Lidia Hurtado, Sara Farrona, Jose Reyes posted to cerevisiae comparison human melanogaster pombe thaliana by swp09 on 2009-05-10 12:17:56 as
	Differential Targeting of Two Distinct SWI/SNF-Related Drosophila Chromatin-Remodeling Complexes [My Copy] Mol. Cell. Biol., Vol. 24, No. 8. (15 April 2004), pp. 3077-3088. by Lisette Mohrmann, Karin Langenberg, Jeroen Krijgsveld, Arnoud J. Kal, Albert J. Heck, Peter C. Verrijzer posted to cerevisiae comparison human melanogaster pombe thaliana by swp09 on 2009-05-10 12:15:50 as along with 1 person emmahe
	The Drosophila brahma complex is an essential coactivator for the trithorax group protein zeste. [My Copy] Genes & development, Vol. 14, No. 9. (1 May 2000), pp. 1058-1071. by A. J. Kal, T. Mahmoudi, N. B. Zak, C. P. Verrijzer posted to cerevisiae comparison human melanogaster pombe thaliana by swp09 on 2009-05-10 12:15:21 as
	Reconstitution of a Functional Core Polycomb Repressive Complex [My Copy] Molecular Cell, Vol. 8, No. 3. (September 2001), pp. 545-556. by Nicole J. Francis, Andrew J. Saurin, Zhaohui Shao, Robert E. Kingston posted to cerevisiae comparison human melanogaster pombe thaliana by swp09 on 2009-05-10 12:14:52 as
	Human SRCAP and Drosophila melanogaster DOM are homologs that function in the notch signaling pathway. [My Copy] Molecular and cellular biology, Vol. 25, No. 15. (August 2005), pp. 6559-6569. by J. C. Eissenberg, M. Wong, J. C. Chrivia posted to cerevisiae comparison human melanogaster pombe thaliana by swp09 on 2009-05-10 12:13:56 as
	Myc interacts genetically with Tip48/Reptin and Tip49/Pontin to control growth and proliferation during Drosophila development. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 33. (16 August 2005), pp. 11799-11804. by P. Bellosta, T. Hulf, S. Balla Diop, et al.F. Usseglio, J. Pradel, D. Aragnol, P. Gallant posted to cerevisiae comparison human melanogaster pombe thaliana by swp09 on 2009-05-10 12:13:10 as
	A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities. [My Copy] Genes & development, Vol. 20, No. 9. (1 May 2006), pp. 1110-1122. by T. Klymenko, B. Papp, W. Fischle, et al.T. Köcher, M. Schelder, C. Fritsch, B. Wild, M. Wilm, J. Müller posted to cerevisiae comparison human melanogaster pombe thaliana by swp09 on 2009-05-10 12:12:35 as

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human	21
cerevisiae	19
comparison	19
melanogaster	19
pombe	19
thaliana	19
domains	7
evolution	7
multi-domain	4
vortrag	3
database	2
fusion	2
phylogeny	2
structure	2
yeast	2
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psi-blast	1
purification	1
reconciliation	1
set	1
tandem_affinity	1
theory	1
tree	1
yeast-two-hybrid	1

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