talponer's library 234 articles Export

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	Mechanisms that specify promoter nucleosome location and identity. [My Copy] Cell, Vol. 137, No. 3. (1 May 2009), pp. 445-458. by P. D. Hartley, H. D. Madhani posted to nucleosome by talponer on 2009-05-12 11:06:15 as along with 1 person JustinCrocker
	The plant immune system [My Copy] Nature, Vol. 444, No. 7117. (16 November 2006), pp. 323-329. by Jonathan D. G. Jones, Jeffery L. Dangl posted to plant resistence sar tesi by talponer on 2008-01-23 10:31:59 as along with 5 people tomhebbron saru emptyhb awooga xico
	RNA silencing in plants [My Copy] Nature, Vol. 431, No. 7006. (2004), pp. 356-363. by David Baulcombe posted to plant resistence silencing tesi virus by talponer on 2007-11-16 16:19:40 as along with 2 people and 1 group micromassive Fritz neurolit
	Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 33. (16 August 2005), pp. 11928-11933. by N. Baumberger, D. C. Baulcombe posted to silencing tesi by talponer on 2007-12-19 11:44:13 as along with 1 person tardigrade
	Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step [My Copy] Genes Dev., Vol. 18, No. 10. (15 May 2004), pp. 1179-1186. by Elisabeth J. Chapman, Alexey I. Prokhnevsky, Kodetham Gopinath, Valerian V. Dolja, James C. Carrington posted to plant resistence silencing tesi virus by talponer on 2007-12-15 10:19:29 as
	The dialogue between viruses and hosts in compatible interactions [My Copy] Current Opinion in Plant Biology, Vol. 5, No. 4. (1 August 2002), pp. 279-284. by Andrew Maule, Veronique Leh, Carsten Lederer posted to plant tesi virus by talponer on 2007-12-11 18:27:30 as along with 1 person saru
	Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA [My Copy] Proceedings of the National Academy of Sciences, Vol. 95, No. 23. (10 November 1998), pp. 13959-13964. by Peter M. Waterhouse, Michael W. Graham, Ming-Bo Wang posted to plant resistence silencing tesi virus by talponer on 2007-11-22 14:20:34 as
	Post-transcriptional gene-silencing: RNAs on the attack or on the defense? [My Copy] BioEssays, Vol. 22, No. 6. (2000), pp. 520-531. by Titia Sijen, Jan M. Kooter posted to plant silencing tesi virus by talponer on 2007-11-22 10:21:20 as
	Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response [My Copy] Trends in Plant Science, Vol. 9, No. 5. (May 2004), pp. 244-252. by Wangxia Wang, Basia Vinocur, Oded Shoseyov, Arie Altman posted to shock network hsp90 hsp70 hsf heat by talponer on 2009-10-17 15:35:33 as
	The small heat shock proteins and their clients [My Copy] Cellular and Molecular Life Sciences, Vol. 64, No. 3. (20 February 2007), pp. 294-306. by H. Nakamoto, L. Vígh posted to shock review hsp90 hsp70 hsf heat by talponer on 2009-10-06 10:39:13 as
	Cytosolic heat shock protein 90 regulates heat shock transcription factor in Arabidopsis thaliana. [My Copy] Plant signaling & behavior, Vol. 3, No. 9. (September 2008), pp. 660-662. by Kenji Yamada, Mikio Nishimura posted to hsp90 hsf by talponer on 2009-09-09 18:43:32 as
	Could Heat Shock Transcription Factors Function as Hydrogen Peroxide Sensors in Plants? [My Copy] Ann Bot, Vol. 98, No. 2. (1 August 2006), pp. 279-288. by G. A. D. Miller, R. O. N. Mittler posted to review heat by talponer on 2009-09-09 16:11:21 as
	The diversity of plant heat stress transcription factors [My Copy] Trends in Plant Science, Vol. 12, No. 10. (October 2007), pp. 452-457. by P. Vonkoskulldoring, K. Scharf, L. Nover posted to review heat by talponer on 2009-09-09 15:53:10 as along with 1 person udivi
	Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors. [My Copy] Journal of biosciences, Vol. 29, No. 4. (December 2004), pp. 471-487. by Sanjeev Kumar K. Baniwal, Kapil Bharti, Kwan Yu Y. Chan, et al.Markus Fauth, Arnab Ganguli, Sachin Kotak, Shravan Kumar K. Mishra, Lutz Nover, Markus Port, Klaus-Dieter D. Scharf, Joanna Tripp, Christian Weber, Dirk Zielinski, Pascal von Koskull-Döring posted to heat by talponer on 2009-09-09 15:48:49 as
	Complexity of the heat stress response in plants [My Copy] Current Opinion in Plant Biology, Vol. 10, No. 3. (June 2007), pp. 310-316. by S. Kotak, J. Larkindale, U. Lee, P. Vonkoskulldoring, E. Vierling, K. Scharf posted to shock rewiev heat by talponer on 2009-09-04 18:20:44 as along with 1 person udivi
	Genomics of Lung Cancer [My Copy] Proc Am Thorac Soc, Vol. 6, No. 2. (15 April 2009), pp. 152-158. by Alain C. Borczuk, Rebecca L. Toonkel, Charles A. Powell posted to microarray lung cancer by talponer on 2009-09-03 17:32:21 as
	Reconstruct gene regulatory network using slice pattern model [My Copy] BMC Genomics, Vol. 10, No. Suppl 1. (2009), S2. by Yadong Wang, Guohua Wang, Bo Yang, et al.Haijun Tao, Jack Yang, Youping Deng, Yunlong Liu posted to time-course regulation network modelling microarray by talponer on 2009-09-01 16:22:14 as
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted to alignment sequences software by talponer on 2009-07-28 23:37:21 as along with 36 people and 4 groups jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd polivares torfinnnome n00c jmcq rschulz ghattem operon humburg idonaldson mmartin skembel dquest heliopais djkt GeeSharpMinor bertelsen darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics [My Copy] PLoS Comput Biol, Vol. 4, No. 3. (21 March 2008), e1000021. by Stephen A. Ramsey, Sandy L. Klemm, Daniel E. Zak, et al.Kathleen A. Kennedy, Vesteinn Thorsson, Bin Li, Mark Gilchrist, Elizabeth S. Gold, Carrie D. Johnson, Vladimir Litvak, Garnet Navarro, Jared C. Roach, Carrie M. Rosenberger, Alistair G. Rust, Natalya Yudkovsky, Alan Aderem, Ilya Shmulevich posted to biology network system time-course by talponer on 2009-07-27 20:42:45 as along with 3 people and 1 group nicholasflann isimpson ptrobajo Jarman Lab
	From DNA sequence to transcriptional behaviour: a quantitative approach. [My Copy] Nature reviews. Genetics, Vol. 10, No. 7. (01 July 2009), pp. 443-456. by Eran Segal, Jonathan Widom posted to modelling nucleosome by talponer on 2009-07-13 09:02:47 as along with 11 people and 1 group rdiaz ptrobajo guhjy dakelley megraw ilyashl francemirko tonamswish clearbluespring TRHvidsten fenghezi TranscriptionalRegulationWithThermodynamicModels
	Thermodynamics of RNA/DNA hybridization in high-density oligonucleotide microarrays [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. 362, No. 2. (01 April 2006), pp. 433-449. by E. Carlon, T. Heim posted to dna hybridisation kinetic microarray rna by talponer on 2009-06-29 11:22:02 as
	Kinetics of oligonucleotide hybridization to photolithographically patterned DNA arrays [My Copy] Analytical Biochemistry, Vol. 358, No. 2. (15 November 2006), pp. 225-238. by M. Glazer, J. Fidanza, G. Mcgall, et al.M. Trulson, J. Forman, A. Suseno, C. Frank posted to dna hybridisation kinetic rna by talponer on 2009-06-29 11:12:20 as along with 1 person JenniferWWeller
	Evidence That Partial Unwrapping of DNA from Nucleosomes Facilitates the Binding of Heat Shock Factor following DNA Replication in Yeast [My Copy] J. Biol. Chem., Vol. 273, No. 32. (7 August 1998), pp. 20463-20472. by Deborah S. Geraghty, Holly B. Sucic, Junjie Chen, David S. Pederson posted to hsp70 nucleosome by talponer on 2009-06-24 10:19:12 as
	The calmodulin-binding protein kinase 3 is part of heat-shock signal transduction in Arabidopsis thaliana [My Copy] The Plant Journal, Vol. 55, No. 5. (September 2008), pp. 760-773. by Liu, Hong-Tao, Gao, et al. Fei, Li, Guo-Liang, Han, Jin-Long, Liu, De-Long, Sun, Da-Ye, Zhou, Ren-Gang posted to hsp70 network nucleosome regulation by talponer on 2009-05-20 15:45:02 as
	The Hsp90 family of proteins in Arabidopsis thaliana. [My Copy] Cell stress & chaperones, Vol. 6, No. 3. (July 2001), pp. 238-246. by P. Krishna, G. Gloor posted to hsp70 by talponer on 2009-05-18 15:53:07 as
	Comprehensive Expression Profile Analysis of the Arabidopsis Hsp70 Gene Family [My Copy] Plant Physiol., Vol. 126, No. 2. (1 June 2001), pp. 789-800. by Dong Y. Sung, Elizabeth Vierling, Charles L. Guy posted to hsp70 nucleosome by talponer on 2009-05-15 18:42:01 as along with 1 person SKD
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to chromatin nucleosome by talponer on 2009-05-15 18:34:32 as along with 29 people and 8 groups viren4388 daveGerrard Dulce wowalz siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
	Chromatin decouples promoter threshold from dynamic range [My Copy] Nature, Vol. 453, No. 7192. (16 April 2008), pp. 246-250. by Felix H. Lam, David J. Steger, Erin K. O/'Shea posted to chromatin nucleosome by talponer on 2009-05-15 18:30:54 as along with 4 people mmcclean inesdesantiago emptyhb jjray
	Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. [My Copy] Nucleic acids research, Vol. 36, No. 16. (6 September 2008), pp. 5221-5231. by R. Jothi, S. Cuddapah, A. Barski, K. Cui, K. Zhao posted to chip-seq statistics by talponer on 2009-05-13 09:53:42 as along with 10 people tonamswish ewilban1 polivares guhjy mcm Eroslavochka inesdesantiago mdperry sebastien_vigneau idonaldson
	FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock. [My Copy] Plant Cell, Vol. 18, No. 3. (March 2006), pp. 639-650. by K. D. Edwards, P. E. Anderson, A. Hall, et al.N. S. Salathia, J. C. Locke, J. R. Lynn, M. Straume, J. Q. Smith, A. J. Millar posted to biology hsp70 nucleosome by talponer on 2009-05-05 13:53:43 as along with 3 people lptolik Happybene hggr
	The Molecular Basis of Temperature Compensation in the Arabidopsis Circadian Clock [My Copy] Plant Cell, Vol. 18, No. 5. (1 May 2006), pp. 1177-1187. by Peter D. Gould, James C. Locke, Camille Larue, et al.Megan M. Southern, Seth J. Davis, Shigeru Hanano, Richard Moyle, Raechel Milich, Joanna Putterill, Andrew J. Millar, Anthony Hall posted to biology hsp70 nucleosome by talponer on 2009-05-05 13:35:16 as along with 2 people drmacgregor lptolik
	Arabidopsis plant homeodomain finger proteins operate downstream of auxin accumulation in specifying the vasculature and primary root meristem [My Copy] The Plant Journal, Vol. 9999, No. 9999. (2009) by Carole L. Thomas, Dominik Schmidt, Emmanuelle M. Bayer, Rene Dreos, Andrew J. Maule posted to microarray by talponer on 2009-04-28 16:57:54 as
	Nucleosome positioning signals in genomic DNA [My Copy] Genome Res. (9 July 2007), gr.6101007. by Heather E. Peckham, Robert E. Thurman, Yutao Fu, et al.John A. Stamatoyannopoulos, William S. Noble, Kevin Struhl, Zhiping Weng posted to nucleosome simulation statistics by talponer on 2009-04-28 12:30:26 as along with 3 people and 1 group aalibes epigenetics cabbagezs Bioinformatics
	Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion [My Copy] PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e13. by Guo-Cheng Yuan, Jun S. Liu posted to chip-seq hmm nucleosome sequences by talponer on 2009-04-23 10:31:05 as along with 2 people and 1 group aalibes stajich Mycology
	A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome [My Copy] Genome Research, Vol. 18, No. 7. (12 July 2008), pp. 1073-1083. by Travis N. Mavrich, Ilya P. Ioshikhes, Bryan J. Venters, et al.Cizhong Jiang, Lynn P. Tomsho, Ji Qi, Stephan C. Schuster, Istvan Albert, B. Franklin Pugh posted to chip-seq nucleosome by talponer on 2009-04-22 17:27:02 as along with 7 people hagechouchin443 humburg siebert sonjadaniela vega aalibes gdb
	Translational and rotational settings of H2A.Z nucleosomes across the Saccharomycescerevisiae genome [My Copy] Nature, Vol. 446, No. 7135., pp. 572-576. by Istvan Albert, Travis N. Mavrich, Lynn P. Tomsho, et al.Ji Qi, Sara J. Zanton, Stephan C. Schuster, Franklin B. Pugh posted to chip-seq nucleosome by talponer on 2009-04-22 17:26:34 as along with 4 people and 1 group hagechouchin443 cwbrown lusk vega EisenLab
	Nucleosome positioning and gene regulation: advances through genomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 3. (01 March 2009), pp. 161-172. by Cizhong Jiang, B. Franklin Pugh posted to chip-seq nucleosome review by talponer on 2009-04-22 16:43:51 as along with 13 people and 1 group tonamswish hagechouchin443 humburg fenghezi inesdesantiago rpatward timflutre nilsbecker siebert aalibes idonaldson WanderingAengus provero cube_and_beyond
	Genomic location analysis by ChIP-Seq [My Copy] Journal of Cellular Biochemistry, Vol. 107, No. 1. (1 May 2009), pp. 11-18. by Artem Barski, Keji Zhao posted to chip-seq by talponer on 2009-04-21 14:41:06 as along with 9 people Vincent_Rouilly stubrown guhjy hagechouchin443 tonamswish humburg ewilban1 cassj polivares
	Phytoplasmas and their interactions with hosts. [My Copy] Trends in plant science, Vol. 10, No. 11. (November 2005), pp. 526-535. by N. M. Christensen, K. B. Axelsen, M. Nicolaisen, A. Schulz posted to phytoplasma review by talponer on 2009-03-11 11:43:10 as along with 1 person operon
	Elicitors, Effectors, and R Genes: The New Paradigm and a Lifetime Supply of Questions [My Copy] Annual Review of Phytopathology, Vol. 45, No. 1. (2007), pp. 399-436. by Andrew F. Bent, David Mackey posted to resistence review by talponer on 2009-03-11 11:19:37 as along with 2 people and 1 group ArtemPankin kreibich Khavkin's lab
	A hidden Markov model approach for determining expression from genomic tiling micro arrays [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Kasper Munch, Paul Gardner, Peter Arctander, Anders Krogh posted to hmm microarray segmentation tiling by talponer on 2009-03-05 09:45:49 as along with 2 people bertelsen GeeSharpMinor
	BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 9. (1 May 2006), pp. 1144-1146. by J. C. Marioni, N. P. Thorne, S. Tavaré posted to microarray segmentation tiling by talponer on 2009-03-03 17:59:08 as along with 2 people shikin ellakat
	A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge. [My Copy] Bioinformatics (12 October 2006) by Jiang Du, Joel S S. Rozowsky, Jan O O. Korbel, et al.Zhengdong D D. Zhang, Thomas E E. Royce, Martin H H. Schultz, Michael Snyder, Mark Gerstein posted to microarray segmentation tiling by talponer on 2009-03-03 17:57:30 as along with 9 people and 2 groups bais miguel tuck eckart_bindewald djkt SeungjoonOh blobbybirdman inesdesantiago xingxu Bioinformatics UH - Computational Biology
	Intracellular effects of okadaic acid in the blue mussel Mytilus edulis, and rainbow trout Oncorhynchus mykiss [My Copy] Marine Environmental Research, Vol. 46, No. 1-5. (December 1998), pp. 449-452. by S. Svensson posted to mitilo by talponer on 2009-02-05 15:29:01 as
	Kinetics of diarrhetic shellfish poisoning toxins, okadaic acid, dinophysistoxin-1, pectenotoxin-6 and yessotoxin in scallops <i>Patinopecten yessoensis</i> [My Copy] Fisheries Science, Vol. 71, No. 4. (2005), pp. 948-955. by Toshiyuki Suzuki, Tomoji Igarashi, Kazuhiko Ichimi, et al.Masatoshi Watai, Megumi Suzuki, Eri Ogiso, Takeshi Yasumoto posted to mitilo by talponer on 2009-02-05 14:52:04 as
	Depuration of Okadaic acid (Diarrhetic Shellfish Toxin) in mussels, Mytilus edulis (Linnaeus), feeding on different quantities of nontoxic algae [My Copy] Aquaculture, Vol. 218, No. 1-4. (27 March 2003), pp. 277-291. by S. Svensson posted to mitilo by talponer on 2009-02-05 14:50:25 as
	The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses [My Copy] The Plant Journal, Vol. 50, No. 2. (2007), pp. 347-363. by Joachim Kilian, Dion Whitehead, Jakub Horak, et al.Dierk Wanke, Stefan Weinl, Oliver Batistic, Cecilia D'Angelo, Erich Bornberg-Bauer, Jörg Kudla, Klaus Harter posted to atgenexpress by talponer on 2009-01-05 17:27:27 as
	Position dependent mismatch discrimination on DNA microarrays - experiments and model. [My Copy] BMC bioinformatics, Vol. 9 (01 December 2008), 509. by Thomas Naiser, Jona Kayser, Timo Mai, Wolfgang Michel, Albrecht Ott posted to no-tag by talponer on 2008-12-12 13:02:37 as along with 2 people jfr magusina
	Matched filtering with background suppression for improved quality of base peak chromatograms and mass spectra in liquid chromatography–mass spectrometry [My Copy] Analytica Chimica Acta, Vol. 454, No. 2. (11 March 2002), pp. 167-184. by Rolf Danielsson, Dan Bylund, Karin E. Markides posted to massspec metabolomics normalisation statistics by talponer on 2008-12-02 09:59:17 as along with 1 person robert
	CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction [My Copy] Genome Biology, Vol. 8, No. 12. (20 December 2007), R269. by Samuel Gross, Chuong Do, Marina Sirota, Serafim Batzoglou posted to annotation genome hmm by talponer on 2008-11-25 11:51:33 as along with 5 people and 2 groups seb1 dakelley stajich GustavoLacerda renatomilani EisenLab Mycology

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tesi	123
microarray	53
virus	47
resistence	42
plant	39
silencing	23
tiling	23
tvcv	20
agrobacterium	19
nucleosome	14
sar	13
statistics	12
biology	8
hsp70	8
review	7
chip-seq	6
heat	6
meta-analysis	6
network	6
massspec	5
mitilo	4
normalisation	4
simulation	4
hmm	3
hsf	3
hsp90	3
metabolomics	3
segmentation	3
sequences	3
shock	3
atgenexpress	2
chromatin	2
dna	2
hybridisation	2
kinetic	2
modelling	2
nodulin	2
regulation	2
rna	2
time-course	2
alignment	1
annotation	1
cancer	1
coffee	1
design	1
format	1
genome	1
lung	1
mutagenesis	1
neutron	1
parallel	1
phytoplasma	1
r	1
rewiev	1
software	1
system	1

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