timflutre's library 667 articles Export

	Heterotachy and long-branch attraction in phylogenetics. [My Copy] BMC evolutionary biology, Vol. 5 (2005) by Hervé Philippe, Yan Zhou, Henner Brinkmann, Nicolas Rodrigue, Frédéric Delsuc posted to statistics phylogeny modeling evolution by timflutre on 2009-11-20 15:26:12 as along with 2 people renewang rsandie
	A comparative view of the evolution of grasses under domestication [My Copy] New Phytologist, Vol. 183, No. 2. (2009), pp. 273-290. by Sylvain Glémin, Thomas Bataillon posted to plant grasses genetics evolution domestication by timflutre on 2009-11-19 21:11:52 as
	Quantifying the local reliability of a sequence alignment. [My Copy] Protein engineering, Vol. 9, No. 2. (February 1996), pp. 127-132. by H. T. Mevissen, M. Vingron posted to bioinformatics alignment by timflutre on 2009-11-18 16:29:05 as
	Testing the neutral theory of molecular evolution [My Copy] (July 2005) by Patrick Forber posted to tutorial molecular modeling evolution by timflutre on 2009-11-18 15:32:52 as
	Transposable element distribution, abundance and role in genome size variation in the genus Oryza [My Copy] BMC Evolutionary Biology, Vol. 7, No. 1. (29 August 2007), 152. by Andrea Zuccolo, Aswathy Sebastian, Jayson Talag, et al.Yeisoo Yu, HyeRan Kim, Kristi Collura, Dave Kudrna, Rod Wing posted to transposable_element rice plant genomics by timflutre on 2009-11-18 09:53:42 as along with 1 person aprasad
	Repeated big bangs and the expanding universe: Directionality in plant genome size evolution [My Copy] Plant Science, Vol. 174, No. 6. (June 2008), pp. 557-562. by J. Hawkins, C. Grover, J. Wendel posted to transposable_element review plant genomics by timflutre on 2009-11-18 09:50:48 as
	Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae [My Copy] Cytogenetic and Genome Research, Vol. 110, No. 1-4. (2005), pp. 229-241. by M. A. Grandbastien, C. Audeon, E. Bonnivard, et al.J. M. Casacuberta, B. Chalhoub, A. P. P. Costa, Q. H. Le, D. Melayah, M. Petit, C. Poncet, S. M. Tam, M. A. Van Sluys, C. Mhiri posted to transposable_element stress retrotransposon regulation plant by timflutre on 2009-11-18 09:48:31 as along with 2 people dandaman ArtemPankin
	The Dynamic Ups and Downs of Genome Size Evolution in Brassicaceae [My Copy] Mol Biol Evol, Vol. 26, No. 1. (1 January 2009), pp. 85-98. by Martin A. Lysak, Marcus A. Koch, Jeremy M. Beaulieu, Armin Meister, Ilia J. Leitch posted to transposable_element plant genomics brassica by timflutre on 2009-11-18 09:40:53 as along with 1 person and 1 group ArtemPankin Khavkin's lab
	Computation for ChIP-seq and RNA-seq studies [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to sequencing bioinformatics algorithm by timflutre on 2009-11-17 20:53:33 as along with 22 people and 2 groups Jporci pst epigenetics molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Dynamic Programming Alignment Accuracy [My Copy] Journal of Computational Biology, Vol. 5, No. 3. (January 1998), pp. 493-504. by I. A. N. Holmes, Richard Durbin posted to modeling bioinformatics alignment algorithm by timflutre on 2009-11-16 11:17:04 as
	Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin. [My Copy] PLoS genetics, Vol. 3, No. 11. (30 November 2007) by Pierre Fontanillas, Daniel L. Hartl, Max Reuter posted to transposable_element genomics expression chromatin by timflutre on 2009-11-16 09:32:06 as along with 5 people inesdesantiago maximilianh emptyhb bpcusack shoshin
	The Autonomy of Biology: The Position of Biology Among the Sciences [My Copy] The Quarterly Review of Biology, Vol. 71, No. 1. (1996), pp. 97-106. by Ernst Mayr posted to philosophy biology by timflutre on 2009-11-11 12:27:37 as
	Candidate gene association mapping of Arabidopsis flowering time. [My Copy] Genetics, Vol. 183, No. 1. (September 2009), pp. 325-335. by Ian M. Ehrenreich, Yoshie Hanzawa, Lucy Chou, Judith L. Roe, Paula X. Kover, Michael D. Purugganan posted to quantitative_trait pathway network mapping flowering association arabidopsis by timflutre on 2009-11-11 11:49:27 as
	Molecular phylogeography of domesticated barley traces expansion of agriculture in the Old World. [My Copy] Genetics, Vol. 177, No. 3. (18 November 2007), pp. 1765-1776. by Daisuke Saisho, Michael D. Purugganan posted to population phylogeography molecular genetics evolution domestication barley agriculture by timflutre on 2009-11-11 11:43:23 as along with 1 person ryanraaum
	Genome-wide patterns of nucleotide polymorphism in domesticated rice. [My Copy] PLoS genetics, Vol. 3, No. 9. (September 2007), pp. 1745-1756. by Ana L. Caicedo, Scott H. Williamson, Ryan D. Hernandez, et al.Adam Boyko, Adi Fledel-Alon, Thomas L. York, Nicholas R. Polato, Kenneth M. Olsen, Rasmus Nielsen, Susan R. McCouch, Carlos D. Bustamante, Michael D. Purugganan posted to rice population genetics domestication by timflutre on 2009-11-11 11:33:22 as
	The extent of linkage disequilibrium in rice (Oryza sativa L.). [My Copy] Genetics, Vol. 177, No. 4. (December 2007), pp. 2223-2232. by Kristie A. Mather, Ana L. Caicedo, Nicholas R. Polato, Kenneth M. Olsen, Susan McCouch, Michael D. Purugganan posted to rice population linkage genetics by timflutre on 2009-11-11 11:30:02 as along with 2 people maren scryrps
	Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. [My Copy] Genome research, Vol. 16, No. 10. (October 2006), pp. 1262-1269. by Benoit Piegu, Romain Guyot, Nathalie Picault, et al.Anne Roulin, Abhijit Saniyal, Hyeran Kim, Kristi Collura, Darshan S. Brar, Scott Jackson, Rod A. Wing, Olivier Panaud posted to transposable_element rice retrotransposon polyploidy by timflutre on 2009-11-11 11:27:14 as along with 2 people sbottani aprasad
	The Art of Code [My Copy] (2002) by Maurice J. Black posted to thesis programming by timflutre on 2009-11-10 23:23:24 as
	Unifying evolutionary dynamics: From individual stochastic processes to macroscopic models [My Copy] Theoretical Population Biology, Vol. 69, No. 3. (May 2006), pp. 297-321. by N. Champagnat, R. Ferriere, S. Meleard posted to modeling evolution by timflutre on 2009-11-10 22:05:55 as along with 1 person cosmizer
	The rate of DNA evolution: effects of body size and temperature on the molecular clock. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 1. (4 January 2005), pp. 140-145. by J. F. Gillooly, A. P. Allen, G. B. West, J. H. Brown posted to mutation molecular modeling metabolism evolution allometry by timflutre on 2009-11-10 21:52:15 as along with 1 person and 1 group rvosa FAB-lab
	Statistical Analyses and Markov Modeling of Duplication in Genome Evolution [My Copy] (May 2005) by Yi Zhou posted to modeling genomics evolution duplication by timflutre on 2009-11-10 21:18:45 as
	The Importance of Being Discrete (and Spatial) [My Copy] Theoretical Population Biology, Vol. 46, No. 3. (December 1994), pp. 363-394. by R. Durrett, S. Levin posted to spatialization modeling ecology discretization by timflutre on 2009-11-10 21:05:49 as along with 8 people and 1 group tg1w liucun maren adriandefroment CareyNadell gi0rgi0ne toledoml marcusfrean EntrepreneurialRisks
	The evolution of plant genomes: scaling up from a population perspective. [My Copy] Current opinion in genetics & development, Vol. 18, No. 6. (December 2008), pp. 565-570. by Jonathan M. Flowers, Michael D. Purugganan posted to population plant genomics evolution by timflutre on 2009-11-10 17:56:22 as
	Genome-wide identification of human functional DNA using a neutral indel model. [My Copy] PLoS computational biology, Vol. 2, No. 1. (13 January 2006) by Gerton Lunter, Chris P. Ponting, Jotun Hein posted to modeling indel human genomics bioinformatics by timflutre on 2009-11-10 14:01:49 as along with 12 people and 2 groups gjuggler nklee aprasad eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas bpcusack Stew cisevol mailund EisenLab cis-regulatory-evolution
	Computational Identification and Characterization of Repeats in Sequenced Eukaryotic Genomes [My Copy] (December 2002) by Zhirong Bao posted to transposable_element thesis rice repeats eukaryote clustering bioinformatics by timflutre on 2009-11-10 13:04:52 as
	A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms [My Copy] PLoS Comput Biol, Vol. 3, No. 9. (14 September 2007), e176. by Erika M. Kvikstad, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D. Makova posted to statistics phylogeny indel human chimpanzee bioinformatics alignment by timflutre on 2009-11-10 12:58:06 as along with 4 people and 1 group Iden-J_GluR aprasad djkt cisevol cis-regulatory-evolution
	Fraud: causes and culprits as perceived by science and the media [My Copy] EMBO reports, Vol. 8, No. 1. (2007) by Martina Franzen, Simone Rödder, Peter Weingart posted to misconduct by timflutre on 2009-11-09 15:21:56 as
	Who is responsible? [My Copy] EMBO reports, Vol. 8, No. 8. (2007) by Marie-Claude Roland posted to misconduct by timflutre on 2009-11-09 15:18:08 as
	Double-blind review favours increased representation of female authors. [My Copy] Trends in ecology & evolution (Personal edition), Vol. 23, No. 1. (January 2008), pp. 4-6. by A. E. Budden, T. Tregenza, L. W. Aarssen, J. Koricheva, R. Leimu, C. J. Lortie posted to misconduct by timflutre on 2009-11-09 11:08:01 as along with 1 person szielke
	How To Choose a Good Scientific Problem [My Copy] Molecular Cell, Vol. 35, No. 6. (24 September 2009), pp. 726-728. by Uri Alon posted to miscellanee by timflutre on 2009-11-07 19:44:10 as along with 123 people and 6 groups cefa gvdh penneyft welliegirl bertelsen thegoose xawen chriswillmott nellapower ishiken andreff claudiushauptmann cermak bmoores karthikraman applebyb mordiano Gorzomagnificent Horduna ajaymalik mmwoodman dbikard toszko mthomure cyounkin marsl0am jmzhuo dmorti renatomilani ibre kevinemamy Sergey_gerbek huberse ddbb12 seneca mattbiehl mmborges GeeSharpMinor jjjpppfff zhangfh andreacapocci melo_mcr aaltenburger iannis jichok josephjose TorstenWaldminghaus kshameer rudalert kvalyi duel_jetty allaves rabit fercosber hax123 iskanbasal livingthingdan poojamaj gonzalez amynmoore ramalldf pvdg sfalsharif dill2009 singhsh rogermug aha jarekadam Jansen04 cgravlee lkakinami anuragsethi flips robfree kaliczp yyfwuhan luciensamary elsantosneto mgaldino daveGerrard sandfire tnhh lesandrop munzmarci pdpcosta mxro wangngu myriasofo OliverHarriman AnthonySoprano robertlischke R_C_Cordeiro daforerog operon nandipati wenhaosparty jeffcrow leocmcheung fgibson snakehsu cisevol michaelbarton dna dullhunk danilov m_lew abellogin cxshang grahamc SantoshKalwar Xusheng leonardo roys benoitvalley zchen75 darshan druvus Asclepius Zephyrus songpku aalibes flieder pedromts Brain-like research group UWA Science Communication milab@yzu Information Integration Architecture BergmanLab Roswell Cancer Crosstalk
	The Piwi-piRNA Pathway Provides an Adaptive Defense in the Transposon Arms Race [My Copy] Science, Vol. 318, No. 5851. (2 November 2007), pp. 761-764. by Alexei A. Aravin, Gregory J. Hannon, Julius Brennecke posted to transposable_element silencing by timflutre on 2009-11-07 18:58:43 as along with 6 people operon galka8_diploma dchughes cabbagezs heliopais zhanghuiqiong
	Competition may determine the diversity of transposable elements [My Copy] Theoretical Population Biology, Vol. 70, No. 3. (November 2006), pp. 364-375. by G. Abrusan, H. Krambeck posted to transposable_element silencing modeling genomics by timflutre on 2009-11-06 21:57:51 as along with 1 person aprasad
	The RNA silencing pathway: the bits and pieces that matter. [My Copy] PLoS computational biology, Vol. 1, No. 2. (July 2005), pp. 155-165. by Marian A. Groenenboom, Athanasius F. Marée, Paulien Hogeweg posted to transposable_element silencing modeling by timflutre on 2009-11-06 21:52:32 as
	Mathematical models of RNA silencing: Unidirectional amplification limits accidental self-directed reactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20. (30 September 2003), pp. 11511-11516. by Carl T. Bergstrom, Erin McKittrick, Rustom Antia posted to silencing modeling by timflutre on 2009-11-06 21:42:59 as along with 1 person tardigrade
	A branching process for the early spread of a transposable element in a diploid population [My Copy] Journal of Mathematical Biology, Vol. 57, No. 6. (1 December 2008), pp. 811-840. by John Marshall posted to transposable_element population modeling genetics evolution by timflutre on 2009-11-06 20:47:10 as
	Generic eukaryotic core promoter prediction using structural features of DNA [My Copy] Genome Research, Vol. 18, No. 2. (20 February 2008), pp. 310-323. by Thomas Abeel, Yvan Saeys, Eric Bonnet, Pierre Rouze, Yves Van de Peer posted to transcription promoter genomics bioinformatics by timflutre on 2009-11-06 09:53:22 as along with 8 people chvlyl hagechouchin443 rsaito tonamswish cjeans cabbagezs maximilianh idonaldson
	A mixability theory for the role of sex in evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 50. (16 December 2008), pp. 19803-19808. by Adi Livnat, Christos Papadimitriou, Jonathan Dushoff, Marcus W. Feldman posted to sex recombination population modeling genetics evolution by timflutre on 2009-11-04 19:42:15 as along with 4 people lcigler kgajos balicea reyez
	How many scientific papers should be retracted? [My Copy] EMBO reports, Vol. 8, No. 5. (May 2007), pp. 422-423. by Murat Cokol, Ivan Iossifov, Raul Rodriguez-Esteban, Andrey Rzhetsky posted to misconduct by timflutre on 2009-11-02 21:51:54 as along with 1 person nurban
	REPuter: the manifold applications of repeat analysis on a genomic scale. [My Copy] Nucleic acids research, Vol. 29, No. 22. (15 November 2001), pp. 4633-4642. by S. Kurtz, J. V. Choudhuri, E. Ohlebusch, C. Schleiermacher, J. Stoye, R. Giegerich posted to repeats bioinformatics algorithm by timflutre on 2009-11-02 21:48:48 as along with 2 people druvus yoanjacquemin
	Finding the missing heritability of complex diseases. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 747-753. by Teri A. Manolio, Francis S. Collins, Nancy J. Cox, et al.David B. Goldstein, Lucia A. Hindorff, David J. Hunter, Mark I. McCarthy, Erin M. Ramos, Lon R. Cardon, Aravinda Chakravarti, Judy H. Cho, Alan E. Guttmacher, Augustine Kong, Leonid Kruglyak, Elaine Mardis, Charles N. Rotimi, Montgomery Slatkin, David Valle, Alice S. Whittemore, Michael Boehnke, Andrew G. Clark, Evan E. Eichler, Greg Gibson, Jonathan L. Haines, Trudy F. Mackay, Steven A. McCarroll, Peter M. Visscher posted to quantitative_trait epistasis by timflutre on 2009-10-30 16:25:37 as along with 16 people and 1 group virolog daveGerrard leemachado lp2 natstreet ns6 balajis jclau liqbbi josepe daforerog fenghezi rdiaz carolep merpublic djkt Journal picks
	Systems genetics of complex traits in Drosophila melanogaster [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 299-307. by Julien F. Ayroles, Mary A. Carbone, Eric A. Stone, et al.Katherine W. Jordan, Richard F. Lyman, Michael M. Magwire, Stephanie M. Rollmann, Laura H. Duncan, Faye Lawrence, Robert R. H. Anholt, Trudy F. C. Mackay posted to genetics drosophila by timflutre on 2009-10-29 01:35:01 as along with 15 people and 2 groups daveGerrard ongenetics FuncGen thokall bernadettgaal dpollard semrich roys rdiaz fenghezi emptyhb bertrandservin daforerog provero djkt BergmanLab RockmanLab
	Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 11. (15 March 2005), pp. 4051-4056. by Yi Zhou, Bud Mishra posted to segmental repeats modeling mammals duplication by timflutre on 2009-10-27 22:16:53 as
	Dynamics of transposable elements: towards a community ecology of the genome [My Copy] Trends in Genetics, Vol. 25, No. 7. (18 July 2009), pp. 317-323. by Samuel Venner, Cédric Feschotte, Christian Biémont posted to transposable_element genomics ecology by timflutre on 2009-10-27 15:39:05 as along with 3 people and 1 group diamantis skembel djkt iSEEM
	The significance of responses of the genome to challenge [My Copy] Science, Vol. 226, No. 4676. (16 November 1984), pp. 792-801. by B. McClintock posted to transposable_element genomics classic by timflutre on 2009-10-25 14:57:05 as
	Repeated Sequences in DNA [My Copy] Science, Vol. 161, No. 3841. (09 August 1968), pp. 529-540. by R. J. Britten, D. E. Kohne posted to classic repeats genomics by timflutre on 2009-10-25 14:47:42 as
	How Athila retrotransposons survive in the Arabidopsis genome [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 219. by Antonio Marco, Ignacio Marin posted to transposable_element thaliana recombination arabidopsis by timflutre on 2009-10-22 16:07:09 as along with 1 person mariakmejia
	Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome [My Copy] Heredity, Vol. 97, No. 6. (20 September 2006), pp. 381-388. by F. Sabot, A. H. Schulman posted to transposable_element plant parasitism by timflutre on 2009-10-22 14:05:58 as along with 5 people and 2 groups tolot27 Terkko dchughes jri ArtemPankin G4ID Genetics-of-Gambling
	Cooperation is Fleeting in the World of Transposable Elements [My Copy] PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e162. by Andreas Wagner posted to transposable_element modeling cooperation bacteria by timflutre on 2009-10-22 12:22:37 as along with 2 people pkm joshuashen
	Transposable elements as genomic diseases [My Copy] Mol. BioSyst., Vol. 5, No. 1. (January 2009), pp. 32-35. by Andreas Wagner posted to transposable_element evolution epidemiology bacteria by timflutre on 2009-10-22 12:19:53 as along with 2 people operon pkm
	More Is Different [My Copy] Science, Vol. 177, No. 4047. (04 August 1972), pp. 393-396. by P. W. Anderson posted to stat_phy philosophy complexity classic by timflutre on 2009-10-21 22:25:38 as along with 4 people and 1 group cgl tomhebbron jvdh lorenzana Centre de Recherches Interdisciplinaires

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transposable_element	147
bioinformatics	126
modeling	117
genomics	107
evolution	106
genetics	88
population	79
plant	56
molecular	54
network	51
alignment	43
expression	42
gene	41
phylogeny	39
repeats	31
duplication	30
rpt	30
miscellanee	24
recombination	24
droso	23
arabidopsis	22
classic	19
epigenetics	19
human	19
rice	19
thaliana	19
domestication	18
indel	18
coalescence	17
robustness	14
silencing	14
wheat	14
behaviour	13
rna	12
statistics	12
algorithm	11
ecology	11
misconduct	10
polyploidy	10
annotation	9
maize	9
review	9
philosophy	8
selection	8
cell	7
chromatin	7
mammals	7
sex	7
dna	6
stress	6
complexity	5
diffusion	5
ecoli	5
evolvability	5
noncoding	5
quasispecies	5
reaction	5
regulation	5
sequencing	5
thesis	5
cereal	4
chaos	4
drosophila	4
evo_devo	4
function	4
helitron	4
hmm	4
mutation	4
news	4
rearrangement	4
retrotransposon	4
single	4
speciation	4
transcription	4
wavelets	4
bacteria	3
biodiversity	3
biology	3
cycle	3
encode	3
eukaryote	3
horizontal	3
metabolism	3
nucleosome	3
quantitative_trait	3
sines	3
stat_phy	3
transfer	3
agriculture	2
barley	2
bias	2
celegans	2
centromere	2
clustering	2
codon	2
cooperation	2
drift	2
epidemiology	2
epistemology	2
haplotype	2
methylation	2
mouse	2
programming	2
yeast	2
3d	1
allometry	1
angiosperms	1
association	1
book	1
brassica	1
chimpanzee	1
creativity	1
crop	1
deletions	1
demography	1
development	1
discretization	1
disease	1
epistasis	1
ethics	1
flowering	1
gcskew	1
genome_sizes	1
grasses	1
histone	1
homeobox	1
imprinting	1
information	1
kinetics	1
lines	1
linkage	1
mapping	1
medicago	1
metazoan	1
microsatellites	1
mites	1
parasitism	1
pathway	1
phylogeography	1
promoter	1
proteomics	1
pseudogenes	1
psychology	1
segmental	1
sequence_comparison	1
spatialization	1
structure	1
sympatry	1
synteny	1
tomato	1
tutorial	1
vertebrate	1

timflutre's library 667 articles Export

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