timflutre's evolution [110 articles] Export

Recent papers added to timflutre's library classified by the tag evolution. You can also see everyone's evolution.

	Object-oriented modeling in genetics [My Copy] In The New Avenues in Bioinformatics (2004), pp. 113-134. by Hadi Quesneville, Dominique Anxolabehere edited by J. Seckbach, E. Rubin posted to transposable_element simulation modeling genomics genetics evolution by timflutre on 2009-11-30 09:39:29 as
	On emergence, agency, and organization [My Copy] Biology and Philosophy, Vol. 21, No. 4. (1 September 2006), pp. 501-521. by Stuart Kauffman, Philip Clayton posted to philosophy evolution complexity by timflutre on 2009-11-23 22:20:52 as along with 1 person sabinaleo
	Heterotachy and long-branch attraction in phylogenetics. [My Copy] BMC evolutionary biology, Vol. 5 (2005) by Hervé Philippe, Yan Zhou, Henner Brinkmann, Nicolas Rodrigue, Frédéric Delsuc posted to statistics phylogeny modeling evolution by timflutre on 2009-11-20 15:26:12 as along with 2 people renewang rsandie
	A comparative view of the evolution of grasses under domestication [My Copy] New Phytologist, Vol. 183, No. 2. (2009), pp. 273-290. by Sylvain Glémin, Thomas Bataillon posted to plant grasses genetics evolution domestication by timflutre on 2009-11-19 21:11:52 as
	Testing the neutral theory of molecular evolution [My Copy] (July 2005) by Patrick Forber posted to tutorial molecular modeling evolution by timflutre on 2009-11-18 15:32:52 as
	Molecular phylogeography of domesticated barley traces expansion of agriculture in the Old World. [My Copy] Genetics, Vol. 177, No. 3. (18 November 2007), pp. 1765-1776. by Daisuke Saisho, Michael D. Purugganan posted to population phylogeography molecular genetics evolution domestication barley agriculture by timflutre on 2009-11-11 11:43:23 as along with 1 person ryanraaum
	Unifying evolutionary dynamics: From individual stochastic processes to macroscopic models [My Copy] Theoretical Population Biology, Vol. 69, No. 3. (May 2006), pp. 297-321. by N. Champagnat, R. Ferriere, S. Meleard posted to modeling evolution by timflutre on 2009-11-10 22:05:55 as along with 1 person cosmizer
	The rate of DNA evolution: effects of body size and temperature on the molecular clock. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 1. (4 January 2005), pp. 140-145. by J. F. Gillooly, A. P. Allen, G. B. West, J. H. Brown posted to mutation molecular modeling metabolism evolution allometry by timflutre on 2009-11-10 21:52:15 as along with 1 person and 1 group rvosa FAB-lab
	Statistical Analyses and Markov Modeling of Duplication in Genome Evolution [My Copy] (May 2005) by Yi Zhou posted to modeling genomics evolution duplication by timflutre on 2009-11-10 21:18:45 as
	The evolution of plant genomes: scaling up from a population perspective. [My Copy] Current opinion in genetics & development, Vol. 18, No. 6. (December 2008), pp. 565-570. by Jonathan M. Flowers, Michael D. Purugganan posted to population plant genomics evolution by timflutre on 2009-11-10 17:56:22 as
	A branching process for the early spread of a transposable element in a diploid population [My Copy] Journal of Mathematical Biology, Vol. 57, No. 6. (1 December 2008), pp. 811-840. by John Marshall posted to transposable_element population modeling genetics evolution by timflutre on 2009-11-06 20:47:10 as
	A mixability theory for the role of sex in evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 50. (16 December 2008), pp. 19803-19808. by Adi Livnat, Christos Papadimitriou, Jonathan Dushoff, Marcus W. Feldman posted to sex recombination population modeling genetics evolution by timflutre on 2009-11-04 19:42:15 as along with 4 people lcigler kgajos balicea reyez
	Transposable elements as genomic diseases [My Copy] Mol. BioSyst., Vol. 5, No. 1. (January 2009), pp. 32-35. by Andreas Wagner posted to transposable_element evolution epidemiology bacteria by timflutre on 2009-10-22 12:19:53 as along with 2 people operon pkm
	Selective constraints on P-element evolution [My Copy] Mol Biol Evol, Vol. 16, No. 4. (1 April 1999), pp. 472-478. by D. J. Witherspoon posted to transposable_element molecular evolution drosophila by timflutre on 2009-09-17 13:03:28 as
	Pervasive Natural Selection in the Drosophila Genome? [My Copy] PLoS Genetics, Vol. 5, No. 6. (5 June 2009), e1000495. by Guy Sella, Dmitri A. Petrov, Molly Przeworski, Peter Andolfatto posted to selection molecular evolution drosophila drift by timflutre on 2009-09-12 11:14:05 as along with 7 people and 1 group emptyhb jjray ematsen reyez lindseyfallis djkt APRegier Morgan Lab-KSU
	Plant retrotransposons. [My Copy] Annual review of genetics, Vol. 33, No. 1. (1999), pp. 479-532. by A. Kumar, J. L. Bennetzen posted to transposable_element plant genomics evolution by timflutre on 2009-09-11 13:13:49 as along with 1 person operon
	Punctuated Equilibria: An Alternative to Phyletic Gradualism [My Copy] In Models in Paleobiology (1972), pp. 82-115. by Niles Eldredge, Stephen J. Gould edited by Thomas J. M. Schopf posted to classic speciation evolution by timflutre on 2009-08-23 10:57:29 as
	Change of Genetic Environment and Evolution [My Copy] In Evolution as a Process (1954), pp. 157-180. by Ernst Mayr edited by E. Mayr, J. Huxley, A. C. Hardy, E. B. Ford posted to classic speciation evolution by timflutre on 2009-08-23 10:51:27 as
	MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (08 June 2006), 292. by Jun Wang, Peter Keightley, Toby Johnson posted to indel algorithm bioinformatics evolution hmm modeling noncoding by timflutre on 2009-07-20 15:34:36 as along with 6 people and 1 group druvus gjuggler Ayest dpollard papamicd bozdagd EisenLab
	Joint Bayesian estimation of alignment and phylogeny. [My Copy] Systematic biology, Vol. 54, No. 3. (June 2005), pp. 401-418. by Benjamin Redelings, Marc Suchard posted to statistics alignment bioinformatics evolution modeling molecular phylogeny by timflutre on 2009-06-04 22:41:40 as along with 3 people cmzmasek aprasad AaronDarling
	Darwinian Agriculture: When Can Humans Find Solutions Beyond the Reach of Natural Selection? [My Copy] The Quarterly Review of Biology, Vol. 78, No. 2. (1 June 2003), pp. 145-168. by Ford R. . Denison, Toby E. . Kiers, Stuart a West posted to agriculture evolution selection by timflutre on 2009-05-11 11:36:29 as
	Evolution and speciation on holey adaptive landscapes [My Copy] Trends in Ecology & Evolution, Vol. 12, No. 8. (August 1997), pp. 307-312. by Sergey Gavrilets posted to evolution speciation by timflutre on 2009-04-20 13:41:28 as
	On the origin of species by sympatric speciation. [My Copy] Nature, Vol. 400, No. 6742. (22 July 1999), pp. 354-357. by U. Dieckmann, M. Doebeli posted to evolution modeling speciation sympatry by timflutre on 2009-04-19 01:04:28 as along with 4 people and 1 group dhodkinson stevanspringer lshaw adriandefroment FAB-lab
	Another step toward quantifying spontaneous mutation [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 27. (July 2008), pp. 9133-9134. by Alexey S. Kondrashov posted to evolution genetics modeling molecular mutation population by timflutre on 2009-03-24 15:48:00 as along with 1 person druvus
	An abundant evolutionarily conserved CSB-PiggyBac fusion protein expressed in Cockayne syndrome. [My Copy] PLoS genetics, Vol. 4, No. 3. (March 2008) by J. C. Newman, A. D. Bailey, H. Y. Fan, T. Pavelitz, A. M. Weiner posted to transposable_element disease evolution by timflutre on 2009-03-23 12:55:01 as
	Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774. by Elliott H. Margulies, Gregory M. Cooper, George Asimenos, et al.Daryl J. Thomas, Colin N. Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S. Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B. Brown, Peter Bickel, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Eric A. Stone, Kate R. Rosenbloom, James W. Kent, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M. Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A. Field, Richard A. Moore, Carrie A. Matthewson, Jacqueline E. Schein, Marco A. Marra, Stylianos E. Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D. Green, Arend Sidow posted to human alignment bioinformatics encode evolution genomics mammals molecular by timflutre on 2009-03-21 20:13:08 as along with 11 people and 5 groups daveGerrard polivares aprasad dpollard dchughes AaronDarling djkt ghattem Garamonfok gjuggler elfar BergmanLab Bioinformatics EisenLab G4ID Genetics-of-Gambling
	Adaptive evolution of non-coding DNA in Drosophila [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1149-1152. by Peter Andolfatto posted to evolution genetics genomics modeling molecular population by timflutre on 2009-03-21 20:02:36 as along with 18 people and 4 groups gregoryross emptyhb provero tkmaia rouault stevanspringer bpb aprasad jmeppley balicea jimmithy emilyhare cdawson adepace pradiptaray Stew mimulus_99 cisevol EisenLab FAB-lab GIG cis-regulatory-evolution
	The genetical evolution of social behaviour. II. [My Copy] Journal of theoretical biology, Vol. 7, No. 1. (July 1964), pp. 17-52. by W. D. Hamilton posted to behaviour evolution genetics modeling population by timflutre on 2009-03-17 09:05:35 as along with 3 people jagarciag renewang dbikard
	The genetical evolution of social behaviour. I. [My Copy] J Theor Biol, Vol. 7, No. 1. (July 1964), pp. 1-16. by W. D. Hamilton posted to behaviour evolution genetics modeling population by timflutre on 2009-03-17 08:50:19 as along with 2 people renewang gregdingle
	Selection and covariance. [My Copy] Nature, Vol. 227, No. 5257. (1 August 1970), pp. 520-521. by G. R. Price posted to behaviour evolution genetics modeling population by timflutre on 2009-03-17 08:48:55 as
	Population Genetics of Polymorphism and Divergence [My Copy] Genetics, Vol. 132, No. 4. (1 December 1992), pp. 1161-1176. by S. A. Sawyer, D. L. Hartl posted to evolution modeling molecular by timflutre on 2009-03-11 22:48:31 as along with 5 people renewang bpb djkt pradiptaray emptyhb
	A Space-Time Process Model for the Evolution of DNA Sequences [My Copy] Genetics, Vol. 139, No. 2. (1 February 1995), pp. 993-1005. by Z. Yang posted to dna evolution modeling molecular by timflutre on 2009-03-11 22:41:51 as along with 5 people gjuggler bpb pradiptaray tale friendpine
	Indel-Based Evolutionary Distance and MouseâHuman Divergence [My Copy] Genome Research, Vol. 14, No. 8. (1 August 2004), pp. 1610-1616. by Aleksey Y. Ogurtsov, Shamil Sunyaev, Alexey S. Kondrashov posted to indel human evolution mammals molecular mouse by timflutre on 2009-03-10 21:39:32 as along with 3 people gregoryross emptyhb aprasad
	Grinding up wheat: a massive loss of nucleotide diversity since domestication. [My Copy] Molecular biology and evolution, Vol. 24, No. 7. (July 2007), pp. 1506-1517. by A. Haudry, A. Cenci, C. Ravel, et al.T. Bataillon, D. Brunel, C. Poncet, I. Hochu, S. Poirier, S. Santoni, S. Glémin, J. David posted to plant domestication evolution haplotype molecular wheat by timflutre on 2009-03-08 21:40:44 as
	Selection on Codon Bias [My Copy] Annual Review of Genetics, Vol. 42, No. 1. (2008), pp. 287-299. by Ruth Hershberg, Dmitri A. Petrov posted to bias codon evolution molecular selection by timflutre on 2009-02-26 09:04:51 as along with 2 people daveGerrard codonusage
	Epigenome dynamics: a quantitative genetics perspective [My Copy] Nature Reviews Genetics, Vol. 9, No. 11. (2008), pp. 883-890. by Frank Johannes, Vincent Colot, Ritsert C. Jansen posted to epigenetics evolution genetics modeling by timflutre on 2009-02-23 17:55:07 as along with 2 people cheyloveday dakelley
	On the tendency of species to form varieties; and on the perpetuation of varieties and species by natural means of selection [My Copy] Journal of the Proceedings of The Linnean Society, Vol. 3 (30 June 1858) by Charles Darwin, Alfred Wallace posted to classic selection evolution by timflutre on 2009-02-23 17:39:09 as
	15 evolutionary gems [My Copy] Nature (January 2009) by Henry Gee, Rory Howlett, Philip Campbell posted to miscellanee evolution by timflutre on 2009-02-20 18:52:22 as
	Evidence for DNA loss as a determinant of genome size. [My Copy] Science, Vol. 287, No. 5455. (11 February 2000), pp. 1060-1062. by D. A. Petrov, T. A. Sangster, J. S. Johnston, D. L. Hartl, K. L. Shaw posted to molecular indel genome_size evolution by timflutre on 2009-02-03 18:59:17 as along with 2 people and 2 groups dpollard penka EisenLab Nie
	High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. [My Copy] Mol Biol Evol, Vol. 15, No. 3. (March 1998), pp. 293-302. by D. A. Petrov, D. L. Hartl posted to transposable_element molecular modeling indel genome_size evolution by timflutre on 2009-02-03 18:56:37 as along with 2 people and 1 group dpollard skumagai EisenLab
	Optimization of gene expression by natural selection [My Copy] Proceedings of the National Academy of Sciences (12 January 2009) by Trevor Bedford, Daniel L. Hartl posted to evolution modeling expression gene by timflutre on 2009-01-28 18:36:27 as along with 5 people and 1 group rdiaz bpcusack phoenixzxl cisevol jjray cis-regulatory-evolution
	Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. [My Copy] Science (New York, N.Y.), Vol. 323, No. 5912. (16 January 2009), pp. 401-404. by Shin Sasaki, Cecilia C. Mello, Atsuko Shimada, et al.Yoichiro Nakatani, Shin-Ichi Hashimoto, Masako Ogawa, Kouji Matsushima, Sam Guoping G. Gu, Masahiro Kasahara, Budrul Ahsan, Atsushi Sasaki, Taro Saito, Yutaka Suzuki, Sumio Sugano, Yuji Kohara, Hiroyuki Takeda, Andrew Fire, Shinichi Morishita posted to chromatin evolution genetics molecular transcription by timflutre on 2009-01-22 00:08:47 as along with 11 people bpcusack tprpip gdb fenghezi ewilban1 benjaminsb taroleo jbhiatt abizar djkt pkonings
	Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes. [My Copy] Nucleic Acids Res, Vol. 31, No. 18. (15 September 2003), pp. 5338-5348. by Z. Zhang, M. Gerstein posted to indel human evolution genomics molecular pseudogenes by timflutre on 2009-01-20 21:28:22 as along with 1 person aprasad
	Patterns of Insertion and Deletion in Mammalian Genomes [My Copy] Current Genomics, Vol. 8, No. 6. (September 2007), pp. 370-378. by Yanhui Fan, Wenjuan Wang, Guoji Ma, Lijing Liang, Qi Shi, Shiheng Tao posted to indel evolution genomics mammals molecular by timflutre on 2009-01-20 21:19:14 as
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to indel alignment bioinformatics evolution molecular phylogeny by timflutre on 2009-01-20 21:07:28 as along with 29 people and 3 groups memerman operon TRHvidsten BioNica cmzmasek pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	Problems and Solutions for Estimating Indel Rates and Length Distributions [My Copy] Mol Biol Evol, Vol. 26, No. 2. (1 February 2009), pp. 473-480. by Reed A. Cartwright posted to indel bioinformatics evolution modeling molecular by timflutre on 2009-01-20 03:09:13 as along with 2 people gjuggler djkt
	Sequence Context affects the rate of short insertions and deletions in flies and primates [My Copy] Genome Biology, Vol. 9 (21 February 2008), R37. by Amos Tanay, Eric D. Siggia posted to indel bioinformatics evolution genomics molecular by timflutre on 2009-01-15 01:37:49 as along with 8 people emptyhb bpcusack djkt lusk biomcgary gjuggler brant aprasad
	Evolution of indirect reciprocity [My Copy] Nature, Vol. 437, No. 7063. (27 October 2005), pp. 1291-1298. by Martin A. Nowak, Karl Sigmund posted to cooperation evolution by timflutre on 2009-01-02 22:07:04 as along with 16 people and 2 groups halukbingol lafuente MarioPaolucci gagliol cosmizer vtraag stevanspringer nellapower gennaro rklancer jerlich adriandefroment mauricelee jasonn sharmiamala tomhebbron Soslab LABSS
	Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 428, No. 6983. (07 March 2004), pp. 617-624. by Manolis Kellis, Bruce W. Birren, Eric S. Lander posted to bioinformatics duplication evolution genomics polyploidy yeast by timflutre on 2008-12-30 13:17:02 as along with 12 people and 2 groups jdoconnell GustavoLacerda gjuggler clearbluespring azazello pinney aramata evaf dchughes nirfriedman IbnBio ehud G4ID Genetics-of-Gambling
	Transducers: an emerging probabilistic framework for modeling indels on trees [My Copy] Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3258-3262. by Robert K. Bradley, Ian Holmes posted to indel alignment bioinformatics evolution molecular phylogeny by timflutre on 2008-12-16 18:03:37 as along with 3 people druvus djkt ryanraaum

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transposable_element	149
bioinformatics	127
modeling	119
evolution	110
genomics	104
genetics	88
population	78
plant	57
molecular	55
network	51
expression	43
alignment	43
gene	42
phylogeny	39
repeats	31
duplication	30
rpt	30
drosophila	27
miscellanee	24
arabidopsis	24
recombination	24
epigenetics	21
thaliana	20
classic	19
rice	19
human	19
domestication	18
indel	18
coalescence	17
silencing	14
robustness	14
wheat	14
behaviour	13
rna	13
statistics	12
ecology	12
algorithm	11
philosophy	11
polyploidy	11
misconduct	10
annotation	10
maize	9
review	9
genome_size	9
selection	8
sex	7
cell	7
chromatin	7
mammals	7
dna	6
stress	6
complexity	6
sequencing	6
noncoding	5
thesis	5
ecoli	5
regulation	5
diffusion	5
evolvability	5
evo_devo	5
reaction	5
quasispecies	5
speciation	4
chaos	4
single	4
mutation	4
hmm	4
news	4
rearrangement	4
wavelets	4
function	4
transcription	4
cereal	4
retrotransposon	4
helitron	4
cycle	3
methylation	3
encode	3
metabolism	3
horizontal	3
eukaryote	3
biodiversity	3
stat_phy	3
biology	3
transfer	3
quantitative_trait	3
nucleosome	3
bacteria	3
sines	3
centromere	2
epistemology	2
drift	2
yeast	2
codon	2
clustering	2
cooperation	2
barley	2
programming	2
epidemiology	2
celegans	2
information	2
agriculture	2
haplotype	2
mouse	2
bias	2
disease	1
deletions	1
segmental	1
phylogeography	1
tomato	1
medicago	1
demography	1
structure	1
grasses	1
epistasis	1
vertebrate	1
proteomics	1
kinetics	1
homeobox	1
association	1
discretization	1
simulation	1
sympatry	1
tutorial	1
mites	1
sequence_comparison	1
crop	1
development	1
allometry	1
psychology	1
book	1
lines	1
mapping	1
synteny	1
brassica	1
flowering	1
spatialization	1
gcskew	1
pathway	1
promoter	1
chimpanzee	1
3d	1
histone	1
microsatellites	1
ethics	1
angiosperms	1
parasitism	1
creativity	1
metazoan	1
linkage	1
imprinting	1
pseudogenes	1

timflutre's evolution [110 articles] Export

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