timflutre's molecular [55 articles] Export Sort

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	Testing the neutral theory of molecular evolution [My Copy] (July 2005) by Patrick Forber posted to tutorial molecular modeling evolution by timflutre on 2009-11-18 15:32:52 as
	Molecular phylogeography of domesticated barley traces expansion of agriculture in the Old World. [My Copy] Genetics, Vol. 177, No. 3. (18 November 2007), pp. 1765-1776. by Daisuke Saisho, Michael D. Purugganan posted to population phylogeography molecular genetics evolution domestication barley agriculture by timflutre on 2009-11-11 11:43:23 as along with 1 person ryanraaum
	The rate of DNA evolution: effects of body size and temperature on the molecular clock. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 1. (4 January 2005), pp. 140-145. by J. F. Gillooly, A. P. Allen, G. B. West, J. H. Brown posted to mutation molecular modeling metabolism evolution allometry by timflutre on 2009-11-10 21:52:15 as along with 1 person and 1 group rvosa FAB-lab
	Selective constraints on P-element evolution [My Copy] Mol Biol Evol, Vol. 16, No. 4. (1 April 1999), pp. 472-478. by D. J. Witherspoon posted to transposable_element molecular evolution drosophila by timflutre on 2009-09-17 13:03:28 as
	Pervasive Natural Selection in the Drosophila Genome? [My Copy] PLoS Genetics, Vol. 5, No. 6. (5 June 2009), e1000495. by Guy Sella, Dmitri A. Petrov, Molly Przeworski, Peter Andolfatto posted to selection molecular evolution drosophila drift by timflutre on 2009-09-12 11:14:05 as along with 7 people and 1 group emptyhb jjray ematsen reyez lindseyfallis djkt APRegier Morgan Lab-KSU
	Joint Bayesian estimation of alignment and phylogeny. [My Copy] Systematic biology, Vol. 54, No. 3. (June 2005), pp. 401-418. by Benjamin Redelings, Marc Suchard posted to statistics alignment bioinformatics evolution modeling molecular phylogeny by timflutre on 2009-06-04 22:41:40 as along with 3 people cmzmasek aprasad AaronDarling
	Another step toward quantifying spontaneous mutation [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 27. (July 2008), pp. 9133-9134. by Alexey S. Kondrashov posted to evolution genetics modeling molecular mutation population by timflutre on 2009-03-24 15:48:00 as along with 1 person druvus
	Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774. by Elliott H. Margulies, Gregory M. Cooper, George Asimenos, et al.Daryl J. Thomas, Colin N. Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S. Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B. Brown, Peter Bickel, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Eric A. Stone, Kate R. Rosenbloom, James W. Kent, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M. Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A. Field, Richard A. Moore, Carrie A. Matthewson, Jacqueline E. Schein, Marco A. Marra, Stylianos E. Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D. Green, Arend Sidow posted to mammal human alignment bioinformatics encode evolution genomics molecular by timflutre on 2009-03-21 20:13:08 as along with 11 people and 5 groups daveGerrard polivares aprasad dpollard dchughes AaronDarling djkt ghattem Garamonfok gjuggler elfar BergmanLab Bioinformatics EisenLab G4ID Genetics-of-Gambling
	Adaptive evolution of non-coding DNA in Drosophila [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1149-1152. by Peter Andolfatto posted to evolution genetics genomics modeling molecular population by timflutre on 2009-03-21 20:02:36 as along with 18 people and 4 groups provero gregoryross emptyhb tkmaia rouault stevanspringer bpb aprasad jmeppley balicea jimmithy emilyhare cdawson adepace pradiptaray Stew mimulus_99 cisevol EisenLab FAB-lab GIG cis-regulatory-evolution
	Population Genetics of Polymorphism and Divergence [My Copy] Genetics, Vol. 132, No. 4. (1 December 1992), pp. 1161-1176. by S. A. Sawyer, D. L. Hartl posted to evolution modeling molecular by timflutre on 2009-03-11 22:48:31 as along with 5 people renewang bpb djkt pradiptaray emptyhb
	A Space-Time Process Model for the Evolution of DNA Sequences [My Copy] Genetics, Vol. 139, No. 2. (1 February 1995), pp. 993-1005. by Z. Yang posted to dna evolution modeling molecular by timflutre on 2009-03-11 22:41:51 as along with 5 people gjuggler bpb pradiptaray tale friendpine
	Indel-Based Evolutionary Distance and MouseâHuman Divergence [My Copy] Genome Research, Vol. 14, No. 8. (1 August 2004), pp. 1610-1616. by Aleksey Y. Ogurtsov, Shamil Sunyaev, Alexey S. Kondrashov posted to mammal indel human evolution molecular mouse by timflutre on 2009-03-10 21:39:32 as along with 3 people gregoryross emptyhb aprasad
	Grinding up wheat: a massive loss of nucleotide diversity since domestication. [My Copy] Molecular biology and evolution, Vol. 24, No. 7. (July 2007), pp. 1506-1517. by A. Haudry, A. Cenci, C. Ravel, et al.T. Bataillon, D. Brunel, C. Poncet, I. Hochu, S. Poirier, S. Santoni, S. Glémin, J. David posted to plant domestication evolution haplotype molecular wheat by timflutre on 2009-03-08 21:40:44 as
	Selection on Codon Bias [My Copy] Annual Review of Genetics, Vol. 42, No. 1. (2008), pp. 287-299. by Ruth Hershberg, Dmitri A. Petrov posted to bias codon evolution molecular selection by timflutre on 2009-02-26 09:04:51 as along with 2 people daveGerrard codonusage
	Evidence for DNA loss as a determinant of genome size. [My Copy] Science, Vol. 287, No. 5455. (11 February 2000), pp. 1060-1062. by D. A. Petrov, T. A. Sangster, J. S. Johnston, D. L. Hartl, K. L. Shaw posted to molecular indel genome_size evolution by timflutre on 2009-02-03 18:59:17 as along with 2 people and 2 groups dpollard penka EisenLab Nie
	High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. [My Copy] Mol Biol Evol, Vol. 15, No. 3. (March 1998), pp. 293-302. by D. A. Petrov, D. L. Hartl posted to transposable_element molecular modeling indel genome_size evolution by timflutre on 2009-02-03 18:56:37 as along with 2 people and 1 group dpollard skumagai EisenLab
	Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. [My Copy] Science (New York, N.Y.), Vol. 323, No. 5912. (16 January 2009), pp. 401-404. by Shin Sasaki, Cecilia C. Mello, Atsuko Shimada, et al.Yoichiro Nakatani, Shin-Ichi Hashimoto, Masako Ogawa, Kouji Matsushima, Sam Guoping G. Gu, Masahiro Kasahara, Budrul Ahsan, Atsushi Sasaki, Taro Saito, Yutaka Suzuki, Sumio Sugano, Yuji Kohara, Hiroyuki Takeda, Andrew Fire, Shinichi Morishita posted to chromatin evolution genetics molecular transcription by timflutre on 2009-01-22 00:08:47 as along with 11 people bpcusack tprpip gdb fenghezi ewilban1 benjaminsb taroleo jbhiatt abizar djkt pkonings
	Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes. [My Copy] Nucleic Acids Res, Vol. 31, No. 18. (15 September 2003), pp. 5338-5348. by Z. Zhang, M. Gerstein posted to indel human evolution genomics molecular pseudogenes by timflutre on 2009-01-20 21:28:22 as along with 1 person aprasad
	Patterns of Insertion and Deletion in Mammalian Genomes [My Copy] Current Genomics, Vol. 8, No. 6. (September 2007), pp. 370-378. by Yanhui Fan, Wenjuan Wang, Guoji Ma, Lijing Liang, Qi Shi, Shiheng Tao posted to mammal indel evolution genomics molecular by timflutre on 2009-01-20 21:19:14 as
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science In Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to indel alignment bioinformatics evolution molecular phylogeny by timflutre on 2009-01-20 21:07:28 as along with 30 people and 3 groups dfdong memerman operon TRHvidsten BioNica cmzmasek pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	Problems and Solutions for Estimating Indel Rates and Length Distributions [My Copy] Mol Biol Evol, Vol. 26, No. 2. (1 February 2009), pp. 473-480. by Reed A. Cartwright posted to indel bioinformatics evolution modeling molecular by timflutre on 2009-01-20 03:09:13 as along with 2 people gjuggler djkt
	Sequence Context affects the rate of short insertions and deletions in flies and primates [My Copy] Genome Biology, Vol. 9 (21 February 2008), R37. by Amos Tanay, Eric D. Siggia posted to indel bioinformatics evolution genomics molecular by timflutre on 2009-01-15 01:37:49 as along with 8 people emptyhb bpcusack djkt lusk biomcgary gjuggler brant aprasad
	Transducers: an emerging probabilistic framework for modeling indels on trees [My Copy] Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3258-3262. by Robert K. Bradley, Ian Holmes posted to indel alignment bioinformatics evolution molecular phylogeny by timflutre on 2008-12-16 18:03:37 as along with 3 people druvus djkt ryanraaum
	Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. [My Copy] Genetics, Vol. 145, No. 4. (April 1997), pp. 1219-1228. by F. Rousset posted to modeling evolution molecular genetics population by timflutre on 2008-12-01 16:57:22 as
	DNA assembly with gaps (Dawg): simulating sequence evolution. [My Copy] Bioinformatics, Vol. 21 Suppl 3 (1 November 2005) by R. A. Cartwright posted to indel evolution molecular bioinformatics modeling by timflutre on 2008-11-18 16:56:46 as along with 2 people gjuggler aprasad
	Exact and heuristic algorithms for the Indel Maximum Likelihood Problem. [My Copy] J Comput Biol, Vol. 14, No. 4. (May 2007), pp. 446-461. by A. B. Diallo, V. Makarenkov, M. Blanchette posted to indel evolution molecular alignment modeling by timflutre on 2008-10-31 15:14:54 as along with 2 people gjuggler aprasad
	Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment [My Copy] Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 289-297. by Jaebum Kim, Saurabh Sinha posted to indel evolution molecular alignment modeling by timflutre on 2008-10-31 15:10:12 as along with 4 people and 1 group gjuggler druvus aprasad indigoviolet EisenLab
	Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. [My Copy] Genetics, Vol. 131, No. 2. (June 1992), pp. 479-491. by L. Excoffier, P. E. Smouse, J. M. Quattro posted to haplotype evolution molecular by timflutre on 2008-10-22 16:53:15 as along with 3 people oneilsh balajis echinotrix
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to evolution molecular bioinformatics modeling phylogeny by timflutre on 2008-10-07 13:44:58 as along with 12 people and 1 group operon BioNica mhamada treangen pradiptaray zwang nuin druvus djkt aprasad gjuggler emptyhb iSEEM
	An evolutionary model for maximum likelihood alignment of DNA sequences. [My Copy] Journal of molecular evolution, Vol. 33, No. 2. (August 1991), pp. 114-124. by J. L. Thorne, H. Kishino, J. Felsenstein posted to alignment bioinformatics phylogeny evolution molecular by timflutre on 2008-08-13 09:32:17 as along with 1 person gjuggler
	Models of Molecular Evolution and Phylogeny [My Copy] Genome Research, Vol. 8, No. 12. (1 December 1998), pp. 1233-1244. by Pietro LiÃ², Nick Goldman posted to modeling phylogeny evolution molecular by timflutre on 2008-08-08 16:40:30 as along with 5 people seb1 BioNica operon gjuggler hdopazo
	Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. [My Copy] Mol Biol Evol, Vol. 10, No. 6. (November 1993), pp. 1396-1401. by Z. Yang posted to statistics phylogeny evolution molecular by timflutre on 2008-06-12 19:08:28 as along with 2 people yonatanf bpb
	Estimating the pattern of nucleotide substitution [My Copy] Journal of Molecular Evolution, Vol. 39, No. 1. (1 July 1994), pp. 105-111. by Ziheng Yang posted to phylogeny evolution molecular by timflutre on 2008-06-12 18:44:17 as along with 1 person CharlesM
	Confidence Limits on Phylogenies: An Approach Using the Bootstrap [My Copy] Evolution, Vol. 39, No. 4. (1985), pp. 783-791. by Joseph Felsenstein posted to statistics bioinformatics phylogeny evolution molecular by timflutre on 2008-06-12 17:48:05 as along with 3 people margamvm forest2087 bandrewfox
	Rooting a phylogenetic tree with nonreversible substitution models. [My Copy] BMC evolutionary biology, Vol. 5, No. 1. (4 January 2005) by V. B. Yap, T. Speed posted to phylogeny evolution molecular by timflutre on 2008-06-12 17:26:22 as
	Inaugural Article: Rapid recent growth and divergence of rice nuclear genomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 101, No. 34. (24 August 2004), pp. 12404-12410. by Jianxin Ma, Jeffrey L. Bennetzen posted to genomics rice evolution molecular by timflutre on 2008-06-04 09:10:16 as along with 1 person soberhaensli
	Molecular phylogenetics: state-of-the-art methods for looking into the past [My Copy] Trends in Genetics, Vol. 17, No. 5. (1 May 2001), pp. 262-272. by Simon Whelan, Pietro Lio, Nick Goldman posted to statistics phylogeny evolution molecular by timflutre on 2008-05-19 14:18:28 as along with 3 people druvus dayjm BioNica
	Dating of the human-ape splitting by a molecular clock of mitochondrial DNA [My Copy] Journal of Molecular Evolution, Vol. 22, No. 2. (1 October 1985), pp. 160-174. by Masami Hasegawa, Hirohisa Kishino, Taka-Aki Yano posted to modeling evolution molecular by timflutre on 2008-03-06 14:12:28 as along with 1 person djkt
	Evolution of protein molecules [My Copy] In Mammalian Protein Metabolism (1969), pp. 21-132. by T. H. Jukes, C. Cantor edited by Academic posted to evolution molecular by timflutre on 2008-02-28 10:36:50 as
	Selection versus demography: a multilocus investigation of the domestication process in maize. [My Copy] Molecular Biology and Evolution, Vol. 21, No. 7. (July 2004), pp. 1214-1225. by M. I. Tenaillon, J. U'ren, O. Tenaillon, B. S. Gaut posted to maize evolution molecular by timflutre on 2007-09-11 09:04:29 as
	A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa. [My Copy] Journal of Molecular Evolution, Vol. 52, No. 2. (February 2001), pp. 144-156. by L. Zhang, S. K. Pond, B. S. Gaut posted to plant evolution molecular by timflutre on 2007-09-11 08:58:30 as along with 1 person druvus
	Detecting substitution-rate heterogeneity among regions of a nucleotide sequence. [My Copy] Molecular Biology and Evolution, Vol. 11, No. 4. (July 1994), pp. 620-629. by B. S. Gaut, B. S. Weir posted to evolution molecular by timflutre on 2007-09-10 17:29:59 as
	A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. [My Copy] Journal of Molecular Evolution, Vol. 16, No. 2. (December 1980), pp. 111-120. by M. Kimura posted to evolution molecular by timflutre on 2007-09-10 17:21:17 as along with 1 person alefox
	Patterns of insertion and deletion in contrasting chromatin domains. [My Copy] Molecular Biology and Evolution, Vol. 19, No. 12. (December 2002), pp. 2211-2225. by J. P. Blumenstiel, D. L. Hartl, E. R. Lozovsky posted to drosophila evolution molecular by timflutre on 2007-09-10 15:41:23 as
	On the rate of DNA sequence evolution in Drosophila. [My Copy] Journal of Molecular Evolution, Vol. 28, No. 5. (May 1989), pp. 398-402. by P. M. Sharp, W. H. Li posted to evolution molecular by timflutre on 2007-09-10 15:38:54 as
	Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. [My Copy] Genetics, Vol. 168, No. 2. (1 October 2004), pp. 1041-1051. by W. S. Wong, Z. Yang, N. Goldman, R. Nielsen posted to evolution molecular by timflutre on 2007-09-10 14:54:20 as along with 6 people katholt renewang BioNica Natasha gjuggler CharlesM
	Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. [My Copy] Molecular Biology and Evolution, Vol. 17, No. 1. (January 2000), pp. 32-43. by Z. Yang, R. Nielsen posted to evolution molecular by timflutre on 2007-09-10 14:51:35 as along with 9 people and 1 group katholt bjorns fernan hdopazo BioNica Garamonfok ankur_iitg RamuAnandakrishnan Ema BioinfoCIPF
	High intrinsic rate of DNA loss in Drosophila. [My Copy] Nature, Vol. 384, No. 6607. (28 November 1996), pp. 346-349. by D. A. Petrov, E. R. Lozovskaya, D. L. Hartl posted to transposable_element molecular genome_size evolution by timflutre on 2007-09-10 13:34:52 as along with 3 people and 1 group dpollard urgi skumagai EisenLab
	Statistical method for testing the neutral mutation hypothesis by DNA polymorphism [My Copy] Genetics, Vol. 123 (1989), pp. 585-595. by F. Tajima posted to evolution molecular genetics population by timflutre on 2007-08-23 21:19:54 as
	Evolutionary rate at the molecular level. [My Copy] Nature, Vol. 217, No. 5129. (17 February 1968), pp. 624-626. by M. Kimura posted to evolution molecular genetics population by timflutre on 2007-08-23 16:41:07 as along with 5 people vprieto BioNica renewang gjuggler elfar

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timflutre's molecular [55 articles] Export Sort

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