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	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted to no-tag by timg on 2009-10-27 08:11:45 as along with 25 people aceol colmryan cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
	Structural systems biology: modelling protein interactions. [My Copy] Nature reviews. Molecular cell biology, Vol. 7, No. 3. (March 2006), pp. 188-197. by Patrick Aloy, Robert B. Russell posted to no-tag by timg on 2009-10-27 08:11:27 as along with 24 people and 3 groups flbarroso chica Scis0000002 ubcg08l ana aalibes bicko xico dgront drastic choonpeng henschel ruvido massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes Evangelia andreas_foersch higueruelo chad_davis jteyra structural_bioinformatics Bioinformatics WetBiology
	Structure, function, and evolution of transient and obligate proteinâprotein interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 31. (2 August 2005), pp. 10930-10935. by Julian Mintseris, Zhiping Weng posted to no-tag by timg on 2009-10-27 08:11:10 as along with 12 people and 3 groups dfdong mgomes barry bjorns wiehe julianm bicko chad_davis cjeans Evangelia marti higueruelo structural_bioinformatics ZLAB Bioinformatics
	Flexible protein-protein docking [My Copy] Current Opinion in Structural Biology In Theory and simulation/Macromolecular assemblages - Joel Janin and Michael Levitt/Edward H Egelman and Andrew GW Leslie, Vol. 16, No. 2. (April 2006), pp. 194-200. by Alexandre M. J. J. Bonvin posted to no-tag by timg on 2009-10-27 08:10:59 as along with 11 people and 3 groups flbarroso oteri laurabailey dgruiz aqeel bicko yongzhao ima sangeetha gloria higueruelo Bioinformatics TSRI_MGL insilicodrug
	SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2 March 2006) by Joan Teyra, Andreas Doms, Michael Schroeder, M Teresa T. Pisabarro posted to no-tag by timg on 2009-10-27 08:10:24 as along with 9 people and 2 groups flbarroso HawkinsJohnC higueruelo jwm bicko chad_davis choonpeng jteyra Lombardo_7 Radiation_Damage Stressosome
	MedusaScore: an accurate force field-based scoring function for virtual drug screening. [My Copy] Journal of chemical information and modeling, Vol. 48, No. 8. (August 2008), pp. 1656-1662. by Shuangye Yin, Lada Biedermannova, Jiri Vondrasek, Nikolay V. Dokholyan posted to no-tag by timg on 2009-09-15 08:33:11 as
	CAPRI: A Critical Assessment of PRedicted Interactions [My Copy] Proteins: Structure, Function, and Genetics, Vol. 52, No. 1. (1 July 2003), pp. 2-9. by Joël Janin, Kim Henrick, John Moult, et al.Lynn T. Eyck, Michael J. E. Sternberg, Sandor Vajda, Ilya Vakser, Shoshana J. Wodak posted to no-tag by timg on 2009-08-25 15:53:34 as along with 3 people mgomes ffranca selrac
	Mapping Protein−Protein Interactions with a Library of Tethered Cutting Reagents: The Binding Site of σ70 on Escherichia coli RNA Polymerase† [My Copy] Biochemistry, Vol. 38, No. 14. (1 April 1999), pp. 4259-4265. by Stacey L. Traviglia, Saul A. Datwyler, Claude F. Meares posted to ppi footprinting by timg on 2009-08-24 14:14:26 as
	Structural basis for the inhibition of porcine pepsin by Ascaris pepsin inhibitor-3 [My Copy] Nat Struct Mol Biol, Vol. 7, No. 8. (August 2000), pp. 653-657. by Kenneth K. S. Ng, Jens F. W. Petersen, Maia M. Cherney, et al.Craig Garen, Jeffrey J. Zalatoris, Chetana Rao-Naik, Ben M. Dunn, Mark R. Martzen, Robert J. Peanasky, Michael N. G. James posted to structure by timg on 2009-07-22 10:02:35 as
	Mapping receptor binding sites in interleukin (IL)-1 receptor antagonist and IL-1 beta by site-directed mutagenesis. Identification of a single site in IL-1ra and two sites in IL-1 beta [My Copy] J. Biol. Chem., Vol. 270, No. 19. (12 May 1995), pp. 11477-11483. by R. J. Evans, J. Bray, J. D. Childs, et al.G. P. Vigers, B. J. Brandhuber, J. J. Skalicky, R. C. Thompson, S. P. Eisenberg posted to bindingsite hotspot interaction interleukin receptor by timg on 2009-03-02 14:48:57 as
	Soluble interleukin-1 receptor — reverse signaling in innate immunoregulation [My Copy] Cytokine & Growth Factor Reviews, Vol. 12, No. 1. (March 2001), pp. 27-32. by B. Sporri, M. Bickel, D. Dobbelaere, J. Machadojr, D. Lottaz posted to interleukin receptor review by timg on 2009-03-02 12:59:27 as
	The Interleukin 1 Receptor: Ligand Interactions and Signal Transduction [My Copy] Cytokine & Growth Factor Reviews, Vol. 9, No. 3-4. (1 December 1998), pp. 221-237. by P. Auron posted to interaction interleukin receptor by timg on 2009-03-02 12:55:33 as
	Model of interaction of the IL-1 receptor accessory protein IL-1RAcP with the IL-1β/IL-1RI complex [My Copy] FEBS Letters, Vol. 499, No. 1-2. (15 June 2001), pp. 65-68. by R. Casadio posted to beta interaction interleukin by timg on 2009-03-02 12:39:37 as
	Hydration of a hydrophobic cavity and its functional role: A simulation study of human interleukin-1? [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 4. (2007), pp. 868-885. by Sandeep Somani, Choon-Peng Chng, Chandra S. Verma posted to beta interleukin md by timg on 2009-03-02 12:31:18 as along with 2 people and 1 group choonpeng sobolevnrm baker-group
	Crystallographic refinement of interleukin 1 beta at 2.0 A resolution [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 86, No. 24. (December 1989), pp. 9667-9671. by J. P. Priestle, H. P. Schär, M. G. Grütter posted to beta interleukin structure by timg on 2009-03-02 08:44:13 as
	Vaccinia virus encodes a soluble type I interferon receptor of novel structure and broad species soecificity [My Copy] Cell, Vol. 81, No. 4. (May 1995), pp. 551-560. by J. Symons posted to b18r interferon introduction receptor by timg on 2009-03-02 06:19:53 as
	X-ray crystal structure of a small antagonist peptide bound to interleukin-1 receptor type 1. [My Copy] J Biol Chem, Vol. 275, No. 47. (24 November 2000), pp. 36927-36933. by G. P. Vigers, D. J. Dripps, C. K. Edwards, B. J. Brandhuber posted to b18r interleukin receptor by timg on 2009-02-27 16:05:14 as along with 2 people and 1 group ssomani higueruelo structure-bii
	New insights into the subversion of the chemokine system by poxviruses [My Copy] European Journal of Immunology, Vol. 37, No. 4. (2007), pp. 880-883. by Antonio Alcami posted to b18r pox by timg on 2009-02-27 14:34:30 as
	Toward Novel Universal Descriptors: Charge Fingerprints [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Frank R. Burden, Mitchell J. Polley, David A. Winkler posted to no-tag by timg on 2009-02-26 12:47:17 as
	Inhibition of caspase-2 by a designed ankyrin repeat protein: specificity, structure, and inhibition mechanism. [My Copy] Structure, Vol. 15, No. 5. (May 2007), pp. 625-636. by A. Schweizer, H. Roschitzki-Voser, P. Amstutz, et al.C. Briand, M. Gulotti-Georgieva, E. Prenosil, H. K. Binz, G. Capitani, A. Baici, A. Plückthun, M. G. Grütter posted to ankyrin designed inhibition structure by timg on 2009-02-24 08:21:06 as along with 1 person cpiscitelli
	F-Box-Like Domains are Present in Most Poxvirus Ankyrin Repeat Proteins [My Copy] Virus Genes, Vol. 31, No. 2. (October 2005), pp. 127-133. by Andrew Mercer, Stephen Fleming, Norihito Ueda posted to ankyrin f-box by timg on 2009-02-24 08:16:26 as
	Ankyrins [My Copy] FEBS Letters, Vol. 482, No. 1-2. (29 September 2000), pp. 1-5. by A. Rubtsov posted to ankyrin review by timg on 2009-02-24 08:12:39 as
	A new cytokine-receptor binding mode revealed by the crystal structure of the IL-1 receptor with an antagonist. [My Copy] Nature, Vol. 386, No. 6621. (13 March 1997), pp. 194-200. by H. Schreuder, C. Tardif, S. Trump-Kallmeyer, et al.A. Soffientini, E. Sarubbi, A. Akeson, T. Bowlin, S. Yanofsky, R. W. Barrett posted to antagonist interleukin receptor by timg on 2009-02-23 18:20:05 as along with 2 people choonpeng higueruelo
	Viruses and interferon: a fight for supremacy. [My Copy] Nature reviews. Immunology, Vol. 2, No. 9. (September 2002), pp. 675-687. by M. G. Katze, Y. He, M. Gale posted to interferon review by timg on 2009-02-23 17:31:12 as along with 1 person kieran101
	VIRUSES AND INTERFERONS [My Copy] Annual Review of Microbiology, Vol. 55, No. 1. (2001), pp. 255-281. by Ganes C. Sen posted to interferon review by timg on 2009-02-23 17:29:38 as
	Type 1 Interferons and the Virus-Host Relationship: A Lesson in Detente [My Copy] Science, Vol. 312, No. 5775. (12 May 2006), pp. 879-882. by Adolfo Garcia-Sastre, Christine A. Biron posted to interferon review by timg on 2009-02-23 17:27:25 as
	Mechanisms of Soluble Cytokine Receptor Generation [My Copy] J Immunol, Vol. 173, No. 9. (1 November 2004), pp. 5343-5348. by Stewart J. Levine posted to interferon review by timg on 2009-02-23 17:25:44 as
	Type I Interferon Receptors: Biochemistry and Biological Functions [My Copy] J. Biol. Chem., Vol. 282, No. 28. (13 July 2007), pp. 20053-20057. by Nicole A. de Weerd, Shamith A. Samarajiwa, Paul J. Hertzog posted to interferon review by timg on 2009-02-23 17:23:25 as along with 1 person guhjy
	Improving the Accuracy of an Affinity Prediction Method by Using Statistics on Shape Complementarity between Proteins [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Tatsuya Yoshikawa, Koki Tsukamoto, Yuichiro Hourai, Kazuhiko Fukui posted to affinity ppi protein shapematching surface by timg on 2009-02-11 10:28:39 as along with 1 person higueruelo
	Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces [My Copy] Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1335-1342. by Nicholas J. Burgoyne, Richard M. Jackson posted to interaction interactionside protein by timg on 2009-02-03 14:59:50 as along with 7 people jinghu_fandm iaolier bicko nickolay conkymacro marti ladab
	Designed Protein-Protein Association [My Copy] Science, Vol. 319, No. 5860. (11 January 2008), pp. 206-209. by Dirk Grueninger, Nora Treiber, Mathias O. Ziegler, Jochen W. Koetter, Monika-Sarah Schulze, Georg E. Schulz posted to interaction protein structuredesign by timg on 2009-01-27 15:18:08 as along with 6 people and 1 group cjeans zwang cactus biomcgary sobolevnrm higueruelo baker-group
	Optimization of electrostatic interactions in protein-protein complexes. [My Copy] Biophysical journal, Vol. 93, No. 10. (15 November 2007), pp. 3340-3352. by K. Brock, K. Talley, K. Coley, P. Kundrotas, E. Alexov posted to bindingsite electrostatic interaction scoring by timg on 2009-01-27 15:11:20 as along with 4 people and 1 group flbarroso dfgreen choonpeng sobolevnrm baker-group
	Identifying and Characterizing Binding Sites and Assessing Druggability [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 2. (23 February 2009), pp. 377-389. by Thomas A. Halgren posted to bindingsite method smallmolecules by timg on 2009-01-22 09:41:45 as along with 4 people and 1 group nickolay richardbickerton TonyIvetac carlosjavierna McCammon
	Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Christian Frech, Michael Kommenda, Viktoria Dorfer, et al.Thomas Kern, Helmut Hintner, Johann Bauer, Kamil Oender posted to bindingsite dataset interaction protein sequence by timg on 2009-01-20 09:10:22 as along with 3 people guhjy grahamc barriot
	How Proteins Get in Touch: Interface Prediction in the Study of Biomolecular Complexes [My Copy] Current Protein and Peptide Science, Vol. 9, No. 4. (August 2008), pp. 394-406. by De Vries, J. Sjoerd, Bonvin, M. J. J. Alexandre posted to interaction interactionside review by timg on 2008-11-07 09:17:24 as
	Interaction-site prediction for protein complexes: a critical assessment [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2203-2209. by Huan-Xiang Zhou, Sanbo Qin posted to interaction interactionside review by timg on 2008-11-07 09:16:41 as along with 14 people dfdong jinghu_fandm flbarroso phoenixzxl tjimenez bicko malcook zwang cabbagezs niallhaslam carlescorbi marti higueruelo kintoki
	Structures of the Cancer-Related Aurora-A, FAK, and EphA2 Protein Kinases from Nanovolume Crystallography [My Copy] Structure, Vol. 10, No. 12. (December 2002), pp. 1659-1667. by J. Nowakowski, C. Cronin, D. Mcree, et al.M. Knuth, C. Nelson, N. Pavletich, J. Rogers, B. Sang, D. Scheibe, R. Swanson posted to aurora_a kinase model protein by timg on 2008-10-29 10:26:26 as
	Molecular motions of human cyclin-dependent kinase 2. [My Copy] J Biol Chem, Vol. 280, No. 14. (8 April 2005), pp. 13993-14005. by C. P. Barrett, M. E. Noble posted to gromacs kinase md by timg on 2008-10-29 09:48:32 as along with 2 people aqeel gloria
	Release of ADP from the catalytic subunit of protein kinase A: A molecular dynamics simulation study [My Copy] Protein Sci, Vol. 14, No. 1. (1 January 2005), pp. 159-168. by Benzhuo Lu, Chung F. Wong, Andrew J. Mccammon posted to atp kinase md by timg on 2008-10-29 09:42:16 as
	Protein-Tyrosinkinasen als Wirkstoff-<I>Targets</I>. Eine wichtige Gruppe intrazellulärer Regulatoren [My Copy] Pharmazie in unserer Zeit, Vol. 37, No. 5. (2008), pp. 370-380. by Thomas Winckler, Ilse Zündorf, Theo Dingermann posted to kinase review wirkstoff by timg on 2008-10-29 09:36:11 as
	Structural mechanism for STI-571 inhibition of abelson tyrosine kinase. [My Copy] Science, Vol. 289, No. 5486. (15 September 2000), pp. 1938-1942. by T. Schindler, W. Bornmann, P. Pellicena, W. T. Miller, B. Clarkson, J. Kuriyan posted to allosterisch kinase by timg on 2008-10-29 09:34:05 as along with 1 person maxell
	General purpose molecular dynamics simulations fully implemented on graphics processing units [My Copy] Journal of Computational Physics, Vol. 227, No. 10. (01 May 2008), pp. 5342-5359. by J. Anderson, C. Lorenz, A. Travesset posted to cuda gpu by timg on 2008-10-10 09:04:05 as along with 5 people melo_mcr georgwachter iantunbridge RamuAnandakrishnan michaelbussmann
	Accelerating molecular modeling applications with graphics processors [My Copy] Journal of Computational Chemistry, Vol. 28, No. 16. (25 September 2007), pp. 2618-2640. by John E. Stone, James C. Phillips, Peter L. Freddolino, David J. Hardy, Leonardo G. Trabuco, Klaus Schulten posted to cuda gpu by timg on 2008-10-10 09:03:29 as along with 9 people and 1 group ihaque naoya charris5 BragilMassoud ruvido sobolevnrm yalexeev mikaellund afenley baker-group
	A computer vision based technique for 3-D sequence-independent structural comparison of proteins. [My Copy] Protein engineering, Vol. 6, No. 3. (April 1993), pp. 279-288. by O. Bachar, D. Fischer, R. Nussinov, H. Wolfson posted to ghashing method by timg on 2008-09-29 09:48:24 as along with 2 people paddydu jwm
	All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins† [My Copy] The Journal of Physical Chemistry B, Vol. 102, No. 18. (1 April 1998), pp. 3586-3616. by A. D. MacKerell, D. Bashford, Bellott, et al.R. L. Dunbrack, J. D. Evanseck, M. J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F. T. K. Lau, C. Mattos, S. Michnick, T. Ngo, D. T. Nguyen, B. Prodhom, W. E. Reiher, B. Roux, M. Schlenkrich, J. C. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, M. Karplus posted to electrostatic scoring by timg on 2008-09-26 17:54:06 as along with 12 people jmparks dsmueller rpetrenko jrperillaj Diego_Prada oceanwind dfgreen mkrishna dimka ttjoseph papatonyhill ssomani
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted to docking introduction review scoring by timg on 2008-09-26 14:11:37 as along with 25 people and 4 groups rabio ucbcjbm flbarroso csrocha oteri dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Evangelia nigham Structural Biology Group TorVergata Bioinformatics TSRI_MGL insilicodrug
	A protein-specifically adapted scoring function for the reranking of docking solutions [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 1. (2007), pp. 98-111. by Wolfgang Müller, Heinrich Sticht posted to method scoring by timg on 2008-09-26 13:57:06 as
	Recent Progress and Future Directions in Protein-Protein Docking [My Copy] Current Protein and Peptide Science, Vol. 9, No. 1. (February 2008), pp. 1-15. by Ritchie, W. David posted to docking review by timg on 2008-09-26 13:49:55 as along with 3 people and 1 group HawkinsJohnC oteri TobiasAbenius Structural Biology Group TorVergata
	A protein-protein docking benchmark. [My Copy] Proteins, Vol. 52, No. 1. (1 July 2003), pp. 88-91. by R. Chen, J. Mintseris, J. Janin, Z. Weng posted to dataset docking by timg on 2008-09-26 13:16:32 as along with 4 people apaydin aqeel bicko Iainios
	The high-resolution X-ray crystal structure of the complex formed between subtilisin Carlsberg and eglin c, an elastase inhibitor from the leech HIRUDO-MEDICINALIS - STRUCTURAL-ANALYSIS, SUBTILISIN STRUCTURE AND INTERFACE GEOMETRY [My Copy] European Journal of Biochemistry, Vol. 166, No. 3. (1987), pp. 673-692. by B. O. D. E. Wolfram, Evangelos Papamokos, Djordje Musil posted to 1cse protein by timg on 2008-09-19 11:14:54 as

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review	14
introduction	11
interaction	10
docking	8
interleukin	8
dataset	6
interferon	6
protein	6
receptor	6
electrostatic	5
kinase	5
method	5
values	5
bindingsite	4
hotspot	4
pair-potential	4
scoring	4
structure	4
aastatistic	3
ankyrin	3
b18r	3
beta	3
interactionside	3
md	3
sas	3
vdw	3
cuda	2
fft	2
ghashing	2
gpu	2
ppi	2
shapematching	2
surface	2
1cse	1
2point	1
affinity	1
allosterisch	1
antagonist	1
atp	1
aurora_a	1
capri	1
designed	1
f-box	1
footprinting	1
formula	1
gromacs	1
homodimer	1
inhibition	1
model	1
pox	1
rmsdresult	1
sequence	1
smallmolecules	1
structuredesign	1
svm	1
tutorial	1
wirkstoff	1

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