tji's library 50 articles Export

	The conformation of the epsilon- and gamma-subunits within the Escherichia coli F(1) ATPase. [My Copy] J Biol Chem, Vol. 276, No. 50. (14 December 2001), pp. 47227-47232. by A. C. Hausrath, R. A. Capaldi, B. W. Matthews posted to ecoli epsilon gamma structure by tji on 2008-02-08 02:49:28 as
	Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase. [My Copy] Nature, Vol. 410, No. 6831. (19 April 2001), pp. 898-904. by R. Yasuda, H. Noji, M. Yoshida, K. Kinosita, H. Itoh posted to fof1 rotation by tji on 2008-01-16 06:40:20 as along with 1 person melting
	F1-ATPase is a highly efficient molecular motor that rotates with discrete 120 degree steps. [My Copy] Cell, Vol. 93, No. 7. (26 June 1998), pp. 1117-1124. by R. Yasuda, H. Noji, K. Kinosita, M. Yoshida posted to fof1 rotation by tji on 2008-01-16 06:37:54 as along with 1 person hsekiguc
	Structure at 2.8 \|[Acirc]\| resolution of F1-ATPase from bovine heart mitochondria [My Copy] Nature, Vol. 370, No. 6491. (25 August 1994), pp. 621-628. by Jan P. Abrahams, Andrew G. W. Leslie, Rene Lutter, John E. Walker posted to fof1 structure by tji on 2008-01-16 06:36:16 as
	A perspective of the binding change mechanism for ATP synthesis. [My Copy] FASEB J, Vol. 3, No. 10. (August 1989), pp. 2164-2178. by P. D. Boyer posted to fof1 rotation by tji on 2008-01-16 06:31:36 as
	Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models [My Copy] Journal of Computational Chemistry, Vol. 13, No. 8. (1992), pp. 952-962. by Shuichi Miyamoto, Peter A. Kollman posted to settle by tji on 2007-12-20 07:58:38 as along with 8 people oteri Lombardo_7 choonpeng A_Coletta_Thesis jwagoner softsimu ashaytan robertvacha
	LINCS: A linear constraint solver for molecular simulations [My Copy] Journal of Computational Chemistry, Vol. 18, No. 12. (1997), pp. 1463-1472. by Berk Hess, Henk Bekker, Herman J. C. Berendsen, Johannes G. E. M. Fraaije posted to lincs by tji on 2007-12-18 05:42:17 as along with 11 people trishul sunnytov kjell loison parnell r2s2 dsmueller mijam A_Coletta_Thesis ashaytan jteyra
	Particle mesh Ewald: An N [center-dot] log(N) method for Ewald sums in large systems [My Copy] The Journal of Chemical Physics, Vol. 98, No. 12. (1993), pp. 10089-10092. by Tom Darden, Darrin York, Lee Pedersen posted to pme by tji on 2007-12-18 05:38:44 as along with 12 people sunnytov bmduggan rpetrenko r2s2 robertvacha A_Coletta_Thesis mleis and_ped10 allmensch easybakemuffin RamuAnandakrishnan ashaytan
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted to pdb by tji on 2007-12-18 05:37:36 as along with 45 people and 5 groups trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac higueruelo boris_aguilar sebk timg References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp beta
	Molecular dynamics simulations of palmitate entry into the hydrophobic pocket of the fatty acid binding protein [My Copy] FEBS Letters, Vol. 581, No. 6. (20 March 2007), pp. 1243-1247. by Yossi Tsfadia, Ran Friedman, Jonathan Kadmon, Anna Selzer, Esther Nachliel, Menachem Gutman posted to method by tji on 2007-12-18 04:52:07 as
	Interaction models for water in relation to protein hydration [My Copy] Intermolecular Forces (1981), pp. 331-342. by H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, J. Hermans posted to spc by tji on 2007-12-18 04:40:39 as
	A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6 [My Copy] Journal of Computational Chemistry, Vol. 25, No. 13. (2004), pp. 1656-1676. by Chris Oostenbrink, Alessandra Villa, Alan E. Mark, Wilfred F. Van Gunsteren posted to 53a6 gromos by tji on 2007-12-18 04:19:59 as along with 6 people dsmueller loison peyamin rodrigofaccioli whitead ashaytan
	Coupling of Phosphorylation to Electron and Hydrogen Transfer by a Chemi-Osmotic type of Mechanism [My Copy] Nature, Vol. 191, No. 4784. (July 1961), pp. 144-148. by Peter Mitchell posted to fof1 by tji on 2007-12-14 07:53:56 as
	MDシミュレーションによるPhotoactive Yellow Proteinの光異性化反応 [My Copy] (2000) by 山田 posted to md by tji on 2007-12-13 07:27:36 as
	シリコン結晶化過程の分子動力学 [My Copy] (2001) by 井上, 丸山 posted to md by tji on 2007-12-13 07:24:55 as
	分子動力学／自由エネルギー摂動法を用いたタンパク質熱構造安定性の研究 [My Copy] (2002) by 沖田, 小長谷 posted to md by tji on 2007-12-13 07:23:25 as
	熱流体工学における分子動力学法 [My Copy] (2001) by 徳増, 小原 posted to md by tji on 2007-12-13 07:18:30 as
	多層カーボンナノチューブの層間熱伝導の分子動力学 [My Copy] (2006) by 和也北村, 茂夫丸山 posted to md by tji on 2007-12-13 02:06:03 as
	VMD: Visual molecular dynamics [My Copy] Journal of Molecular Graphics, Vol. 14, No. 1. (February 1996), pp. 33-38. by W. Humphrey posted to vmd by tji on 2007-12-11 08:07:07 as along with 6 people and 1 group whitead csrocha r2s2 pavanghatty choonpeng RamuAnandakrishnan Jiang Research Group
	GROMACS 3.0: a package for molecular simulation and trajectory analysis [My Copy] Journal of Molecular Modeling, Vol. 7, No. 8. (2001), pp. 306-317. by Erik Lindahl, Berk Hess, David van der Spoel posted to gromacs by tji on 2007-12-11 08:05:05 as along with 9 people and 2 groups trishul FilipeMaia r2s2 janneb dsmueller choonpeng sebk rabio roland_ewald dIEMoSIRIS MoSi-Rostock
	GROMACS: A message-passing parallel molecular dynamics implementation [My Copy] Computer Physics Communications, Vol. 91, No. 1-3. (02 September 1995), pp. 43-56. by H. Berendsen posted to gromacs by tji on 2007-12-11 08:04:28 as along with 7 people trishul xiaoshijun janneb choonpeng ffranca robertvacha gisle
	GROMACS: fast, flexible, and free. [My Copy] Journal of computational chemistry, Vol. 26, No. 16. (December 2005), pp. 1701-1718. by David Van Der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E. Mark, Herman J. Berendsen posted to gromacs by tji on 2007-12-11 08:03:26 as along with 20 people and 2 groups arifor krapnik r2s2 janneb dsmueller oteri choonpeng sebk dimka jwm ttjoseph bilab rabio Dinler softsimu ashaytan robertvacha sunnytov Diego_Prada A_Coletta_Thesis Radiation_Damage Stressosome
	ModLoop: automated modeling of loops in protein structures. [My Copy] Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2500-2501. by A. Fiser, A. Sali posted to modloop by tji on 2007-12-11 08:01:22 as along with 1 person vavi
	Modeling of loops in protein structures. [My Copy] Protein Sci, Vol. 9, No. 9. (September 2000), pp. 1753-1773. by A. Fiser, R. K. Do, A. Sali posted to modloop by tji on 2007-12-11 08:00:42 as along with 5 people mijam warlock6x3 vavi ttjoseph mirzazadeh
	Inhibitory properties of endogenous subunit [epsilon] in the Escherichia coli F1 ATPase [My Copy] Archives of Biochemistry and Biophysics, Vol. 197, No. 1. (1 October 1979), pp. 83-89. by Patrice P. Laget, Jeffrey B. Smith posted to atp epsilon inhibitor by tji on 2007-12-11 07:19:58 as
	F0F1-ATPase/Synthase Is Geared to the Synthesis Mode by Conformational Rearrangement of epsilon Subunit in Response to Proton Motive Force and ADP/ATP Balance [My Copy] J. Biol. Chem., Vol. 278, No. 47. (21 November 2003), pp. 46840-46846. by Toshiharu Suzuki, Tomoe Murakami, Ryota Iino, et al.Junko Suzuki, Sakurako Ono, Yasuo Shirakihara, Masasuke Yoshida posted to epsilon fof1 inhibitor by tji on 2007-12-10 06:21:34 as
	Large conformational changes of the epsilon subunit in the bacterial F1F0 ATP synthase provide a ratchet action to regulate this rotary motor enzyme. [My Copy] Proc Natl Acad Sci U S A, Vol. 98, No. 12. (5 June 2001), pp. 6560-6564. by S. P. Tsunoda, A. J. Rodgers, R. Aggeler, M. C. Wilce, M. Yoshida, R. A. Capaldi posted to bf1 epsilon fof1 by tji on 2007-12-10 06:18:34 as
	Epsilon subunit, an endogenous inhibitor of bacterial F(1)-ATPase, also inhibits F(0)F(1)-ATPase. [My Copy] J Biol Chem, Vol. 274, No. 48. (26 November 1999), pp. 33991-33994. by Y. Kato-Yamada, D. Bald, M. Koike, K. Motohashi, T. Hisabori, M. Yoshida posted to bf1 epsilon inhibitor by tji on 2007-12-10 06:14:55 as
	Energy-dependent changes in the conformation of the epsilon subunit of the chloroplast ATP synthase. [My Copy] J Biol Chem, Vol. 262, No. 31. (5 November 1987), pp. 15037-15040. by M. L. Richter, R. E. McCarty posted to atp cf1 epsilon by tji on 2007-12-10 06:12:14 as
	Structure of the gamma-epsilon complex of ATP synthase. [My Copy] Nat Struct Biol, Vol. 7, No. 11. (November 2000), pp. 1051-1054. by A. J. Rodgers, M. C. Wilce posted to epsilon gamma structure by tji on 2007-12-10 06:11:03 as
	Highly coupled ATP synthesis by F1-ATPase single molecules [My Copy] Nature, Vol. 433, No. 7027. (17 February 2005), pp. 773-777. by Yannick Rondelez, Guillaume Tresset, Takako Nakashima, et al.Yasuyuki Kato-Yamada, Hiroyuki Fujita, Shoji Takeuchi, Hiroyuki Noji posted to atp epsilon by tji on 2007-12-10 06:03:38 as
	Thermophilic F1-ATPase is activated without dissociation of an endogenous inhibitor, epsilon subunit. [My Copy] J Biol Chem, Vol. 272, No. 40. (3 October 1997), pp. 24906-24912. by Y. Kato, T. Matsui, N. Tanaka, E. Muneyuki, T. Hisabori, M. Yoshida posted to epsilon tf1 by tji on 2007-12-10 05:58:52 as
	Inhibitory properties of endogenous subunit epsilon in the Escherichia coli F1 ATPase. [My Copy] Arch Biochem Biophys, Vol. 197, No. 1. (1 October 1979), pp. 83-89. by P. P. Laget, J. B. Smith posted to ecoli epsilon inhibitor by tji on 2007-12-10 05:53:40 as
	Partial purification of active delta and epsilon subunits of the membrane ATPase from escherichia coli. [My Copy] J Supramol Struct, Vol. 3, No. 3. (1975), pp. 248-255. by J. B. Smith, P. C. Sternweis, L. A. Heppel posted to epsilon by tji on 2007-12-10 05:52:29 as
	Molecular dynamics with coupling to an external bath [My Copy] The Journal of Chemical Physics, Vol. 81, No. 8. (1984), pp. 3684-3690. by H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. Dinola, J. R. Haak posted to berendsen pressure temperature by tji on 2007-12-10 05:46:40 as along with 12 people and 1 group georgwachter A_Coletta_Thesis rdf r2s2 dsmueller Lombardo_7 gsub lillekatt allmensch jwagoner choonpeng jteyra Structural Biology Group TorVergata
	The molecular mechanism of ATP synthesis by F1F0-ATP synthase. [My Copy] Biochim Biophys Acta, Vol. 1553, No. 3. (15 February 2002), pp. 188-211. by A. E. Senior, S. Nadanaciva, J. Weber posted to fof1 by tji on 2007-12-07 02:11:17 as along with 1 person balajis
	ATP synthase--a marvellous rotary engine of the cell. [My Copy] Nature reviews. Molecular cell biology, Vol. 2, No. 9. (September 2001), pp. 669-677. by M. Yoshida, E. Muneyuki, T. Hisabori posted to fof1 by tji on 2007-12-06 09:11:05 as along with 3 people tux2000 toerst hsekiguc
	F1-ATPase: a highly efficient rotary ATP machine. [My Copy] Essays Biochem, Vol. 35 (2000), pp. 3-18. by K. Kinosita, R. Yasuda, H. Noji posted to fof1 by tji on 2007-12-06 09:10:24 as
	The ATP synthase--a splendid molecular machine. [My Copy] Annu Rev Biochem, Vol. 66 (1997), pp. 717-749. by P. D. Boyer posted to fof1 by tji on 2007-12-06 08:26:57 as
	Linear and rotary molecular motors. [My Copy] Adv Exp Med Biol, Vol. 453 (1998) by K. Kinosita posted to rotation by tji on 2007-12-06 06:16:36 as
	Direct observation of the rotation of F1-ATPase. [My Copy] Nature, Vol. 386, No. 6622. (20 March 1997), pp. 299-302. by H. Noji, R. Yasuda, M. Yoshida, K. Kinosita posted to rotation by tji on 2007-12-06 06:16:11 as
	Direct observation of the rotation of epsilon subunit in F1-ATPase. [My Copy] J Biol Chem, Vol. 273, No. 31. (31 July 1998), pp. 19375-19377. by Y. Kato-Yamada, H. Noji, R. Yasuda, K. Kinosita, M. Yoshida posted to epsilon rotation by tji on 2007-12-06 06:15:34 as
	Isolated epsilon subunit of Bacillus subtilis F1-ATPase binds ATP. [My Copy] FEBS Lett, Vol. 579, No. 30. (19 December 2005), pp. 6875-6878. by Y. Kato-Yamada posted to atp bf1 epsilon by tji on 2007-12-06 06:12:42 as
	Crystal structure of the epsilon subunit of the proton-translocating ATP synthase from Escherichia coli. [My Copy] Structure, Vol. 5, No. 9. (15 September 1997), pp. 1219-1230. by U. Uhlin, G. B. Cox, J. M. Guss posted to ecoli epsilon structure by tji on 2007-12-06 06:11:58 as
	Structures of the thermophilic F1-ATPase epsilon subunit suggesting ATP-regulated arm motion of its C-terminal domain in F1. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 27. (3 July 2007), pp. 11233-11238. by Hiromasa Yagi, Nobumoto Kajiwara, Hideaki Tanaka, et al.Tomitake Tsukihara, Yasuyuki Kato-Yamada, Masasuke Yoshida, Hideo Akutsu posted to epsilon structure tf1 by tji on 2007-12-06 06:11:01 as along with 1 person tprpip
	Real-time monitoring of conformational dynamics of the epsilon subunit in F1-ATPase. [My Copy] J Biol Chem, Vol. 280, No. 48. (2 December 2005), pp. 40130-40134. by R. Iino, T. Murakami, S. Iizuka, Y. Kato-Yamada, T. Suzuki, M. Yoshida posted to epsilon iino by tji on 2007-12-06 06:10:19 as
	Isolated epsilon subunit of thermophilic F1-ATPase binds ATP. [My Copy] J Biol Chem, Vol. 278, No. 38. (19 September 2003), pp. 36013-36016. by Y. Kato-Yamada, M. Yoshida posted to epsilon tf1 by tji on 2007-12-06 06:09:43 as
	gammaepsilon Sub-complex of thermophilic ATP synthase has the ability to bind ATP. [My Copy] Biochem Biophys Res Commun, Vol. 349, No. 4. (3 November 2006), pp. 1368-1371. by S. Iizuka, S. Kato, M. Yoshida, Y. Kato-Yamada posted to epsilon gamma tf1 by tji on 2007-12-06 02:03:30 as
	Movement of the helical domain of the epsilon subunit is required for the activation of thermophilic F1-ATPase. [My Copy] J Biol Chem, Vol. 275, No. 46. (17 November 2000), pp. 35746-35750. by Y. Kato-Yamada, M. Yoshida, T. Hisabori posted to epsilon tf1 by tji on 2007-12-06 02:02:40 as
	Role of the epsilon subunit of thermophilic F1-ATPase as a sensor for ATP [My Copy] J. Biol. Chem. (12 October 2007), M707509200. by Shigeyuki Kato, Masasuke Yoshida, Yasuyuki Kato-Yamada posted to epsilon tf1 by tji on 2007-12-06 02:01:17 as

Note: You may cite this page as: http://www.citeulike.org/user/tji

epsilon	20
fof1	11
tf1	6
rotation	6
md	5
structure	5
inhibitor	4
atp	4
bf1	3
ecoli	3
gromacs	3
gamma	3
modloop	2
berendsen	1
53a6	1
gromos	1
method	1
lincs	1
iino	1
cf1	1
pdb	1
temperature	1
vmd	1
pme	1
pressure	1
spc	1
settle	1

tji's library 50 articles Export

tji's tags