tjimenez's binding_pocket_recognition [34 articles] Export Sort

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	Identification of hot spots within druggable binding regions by computational solvent mapping of proteins. [My Copy] Journal of medicinal chemistry, Vol. 50, No. 6. (22 March 2007), pp. 1231-1240. by Melissa R. Landon, David R. Lancia, Jessamin Yu, Spencer C. Thiel, Sandor Vajda posted to binding_pocket_recognition by tjimenez on 2008-04-23 09:44:24 as along with 3 people ubcg08l bicko willpitt
	Structure-Based Identification of Small Molecule Binding Sites Using a Free Energy Model [My Copy] Journal of Chemical Information and Modeling, Vol. 46, No. 6. (1 November 2006), pp. 2631-2637. by Ryan G. Coleman, Anna C. Salzberg, Alan C. Cheng posted to binding_pocket_recognition by tjimenez on 2008-04-23 09:42:24 as along with 3 people and 1 group flbarroso caporaso cjeans biomedical-nlp
	Utilising structural knowledge in drug design strategies: applications using Relibase. [My Copy] Journal of molecular biology, Vol. 326, No. 2. (14 February 2003), pp. 621-636. by J. Günther, A. Bergner, M. Hendlich, G. Klebe posted to binding_pocket_recognition by tjimenez on 2008-04-23 09:11:17 as
	Finding functional sites in structural genomics proteins. [My Copy] Structure (London, England : 1993), Vol. 12, No. 8. (August 2004), pp. 1405-1412. by A. Stark, A. Shkumatov, R. B. Russell posted to binding_pocket_recognition sequence_similarity by tjimenez on 2008-04-23 07:33:35 as
	Using a neural network and spatial clustering to predict the location of active sites in enzymes. [My Copy] J Mol Biol, Vol. 330, No. 4. (18 July 2003), pp. 719-734. by A. Gutteridge, G. J. Bartlett, J. M. Thornton posted to binding_pocket_recognition structure_to_function by tjimenez on 2008-04-23 07:33:03 as along with 7 people and 1 group ramiro2k chrn Einat alexg gbart eweaver sriram_s structural_bioinformatics
	POCKET: a computer graphics method for identifying and displaying protein cavities and their surrounding amino acids. [My Copy] J Mol Graph, Vol. 10, No. 4. (December 1992), pp. 229-234. by D. G. Levitt, L. J. Banaszak posted to binding_pocket_recognition by tjimenez on 2008-04-22 19:32:19 as along with 2 people nickolay sriram_s
	Using structural motif descriptors for sequence-based binding site prediction. [My Copy] BMC bioinformatics, Vol. 8 Suppl 4 (2007) by Andreas Henschel, Christof Winter, Wan Kyu K. Kim, Michael Schroeder posted to binding_pocket_recognition by tjimenez on 2008-04-22 11:28:20 as along with 3 people winterschlaefer iaolier Evangelia
	A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites. [My Copy] BMC Bioinformatics, Vol. 8 Suppl 4 (2007) by L. Xie, P. E. Bourne posted to binding_pocket_recognition shape by tjimenez on 2008-04-22 11:27:18 as along with 2 people iaolier higueruelo
	Localization of protein-binding sites within families of proteins. [My Copy] Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360. by D. Korkin, F. P. Davis, A. Sali posted to binding_pocket_recognition by tjimenez on 2008-04-22 09:12:26 as along with 4 people and 4 groups barry bicko marcius wilbur structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Ligand binding: functional site location, similarity and docking. [My Copy] Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 389-395. by S. J. Campbell, N. D. Gold, R. M. Jackson, D. R. Westhead posted to binding_pocket_recognition by tjimenez on 2008-04-22 09:09:27 as along with 1 person blackbart
	Fast prediction and visualization of protein binding pockets with PASS. [My Copy] J Comput Aided Mol Des, Vol. 14, No. 4. (May 2000), pp. 383-401. by G. P. Brady, P. F. Stouten posted to binding_pocket_recognition by tjimenez on 2008-04-22 09:08:26 as along with 2 people tomjad nickolay
	Empirical rules facilitate the search for binding sites on protein surfaces. [My Copy] Journal of molecular graphics & modelling, Vol. 25, No. 5. (January 2007), pp. 671-679. by H. te Heesen, A. M. Schlitter, J. Schlitter posted to binding_pocket_recognition by tjimenez on 2008-04-22 09:06:57 as
	Localization of binding sites in protein structures by optimization of a composite scoring function. [My Copy] Protein Sci, Vol. 15, No. 10. (October 2006), pp. 2366-2380. by A. Rossi, M. A. Marti-Renom, A. Sali posted to binding_pocket_recognition by tjimenez on 2008-04-22 09:06:11 as along with 3 people mkotlyar nickolay MaggieYe
	Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites. [My Copy] Proteins, Vol. 68, No. 2. (1 August 2007), pp. 516-529. by T. Kawabata, N. Go posted to binding_pocket_recognition by tjimenez on 2008-04-22 09:05:01 as
	PocketDepth: a new depth based algorithm for identification of ligand binding sites in proteins. [My Copy] Journal of structural biology, Vol. 161, No. 1. (January 2008), pp. 31-42. by Y. Kalidas, N. Chandra posted to binding_pocket_recognition by tjimenez on 2008-04-22 09:04:21 as
	A computational procedure for determining energetically favorable binding sites on biologically important macromolecules. [My Copy] J Med Chem, Vol. 28, No. 7. (July 1985), pp. 849-857. by P. J. Goodford posted to binding_pocket_recognition by tjimenez on 2008-04-22 09:00:59 as along with 3 people papatonyhill sim82 GermanErlenkamp
	A method for localizing ligand binding pockets in protein structures. [My Copy] Proteins, Vol. 62, No. 2. (1 February 2006), pp. 479-488. by F. Glaser, R. J. Morris, R. J. Najmanovich, R. A. Laskowski, J. M. Thornton posted to binding_pocket_recognition by tjimenez on 2008-04-22 09:00:03 as along with 4 people nickolay sriram_s bilab jwm
	Detection, delineation, measurement and display of cavities in macromolecular structures. [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 50, No. Pt 2. (1 March 1994), pp. 178-185. by G. J. Kleywegt, T. A. Jones posted to binding_pocket_recognition by tjimenez on 2008-04-22 08:55:27 as along with 1 person and 2 groups jwm Radiation_Damage Stressosome
	Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design. [My Copy] Protein Sci, Vol. 7, No. 9. (September 1998), pp. 1884-1897. by J. Liang, H. Edelsbrunner, C. Woodward posted to binding_pocket_recognition by tjimenez on 2008-04-22 08:49:50 as along with 2 people nickolay higueruelo
	The automatic search for ligand binding sites in proteins of known three-dimensional structure using only geometric criteria. [My Copy] J Mol Biol, Vol. 256, No. 1. (16 February 1996), pp. 201-213. by K. P. Peters, J. Fauck, C. Frömmel posted to binding_pocket_recognition by tjimenez on 2008-04-22 08:48:23 as along with 3 people ramiro2k nickolay sriram_s
	Protein clefts in molecular recognition and function. [My Copy] Protein Sci, Vol. 5, No. 12. (December 1996), pp. 2438-2452. by R. A. Laskowski, N. M. Luscombe, M. B. Swindells, J. M. Thornton posted to binding_pocket_recognition by tjimenez on 2008-04-22 08:47:29 as along with 1 person sriram_s
	LIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins. [My Copy] J Mol Graph Model, Vol. 15, No. 6. (December 1997) by M. Hendlich, F. Rippmann, G. Barnickel posted to binding_pocket_recognition by tjimenez on 2008-04-22 08:39:06 as along with 1 person nickolay
	LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation [My Copy] BMC Structural Biology, Vol. 6, No. 1. (24 September 2006), 19. by Bingding Huang, Michael Schroeder posted to binding_pocket_recognition by tjimenez on 2008-04-22 08:37:37 as along with 6 people superpyrin tomjad iaolier richardbickerton reyez nickolay
	PocketPicker: analysis of ligand binding-sites with shape descriptors. [My Copy] Chemistry Central journal, Vol. 1 (2007) by M. Weisel, E. Proschak, G. Schneider posted to binding_pocket_recognition by tjimenez on 2008-04-22 08:37:13 as
	On the nature of cavities on protein surfaces: Application to the identification of drug-binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (13 February 2006), pp. 892-906. by Murad Nayal, Barry Honig posted to binding_pocket_recognition by tjimenez on 2008-04-22 08:36:48 as along with 6 people and 1 group ubcg08l iaolier BragilMassoud pansapiens Einat nickolay structural_bioinformatics
	Automated prediction of ligand-binding sites in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Rodney Harris, Arthur J. Olson, David S. Goodsell posted to binding_pocket_recognition by tjimenez on 2008-04-22 07:46:52 as along with 4 people iaolier oteri carlescorbi RamuAnandakrishnan
	Interaction-site prediction for protein complexes: a critical assessment [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2203-2209. by Huan-Xiang Zhou, Sanbo Qin posted to binding_pocket_recognition by tjimenez on 2008-04-17 09:10:40 as along with 14 people dfdong jinghu_fandm flbarroso timg phoenixzxl bicko malcook zwang cabbagezs niallhaslam carlescorbi marti higueruelo kintoki
	Fast dynamics perturbation analysis for prediction of protein functional sites [My Copy] BMC Structural Biology, Vol. 8 (30 January 2008), 5. by Dengming Ming, Judith D. Cohn, Michael E. Wall posted to binding_pocket_recognition by tjimenez on 2008-04-17 09:05:14 as along with 1 person higueruelo
	Extraction, quantification and visualization of protein pockets. [My Copy] Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference, Vol. 6 (2007), pp. 275-286. by X. Zhang, C. Bajaj posted to binding_pocket_recognition by tjimenez on 2008-04-17 09:00:01 as
	Pocket extraction on proteins via the Voronoi diagram of spheres. [My Copy] Journal of molecular graphics & modelling, Vol. 26, No. 7. (April 2008), pp. 1104-1112. by D. Kim, C. H. Cho, Y. Cho, J. Ryu, J. Bhak, D. S. Kim posted to binding_pocket_recognition by tjimenez on 2008-04-17 08:59:34 as
	eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (1 July 2007) by K. Kinoshita, Y. Murakami, H. Nakamura posted to binding_pocket_recognition by tjimenez on 2007-11-08 16:44:12 as along with 1 person flbarroso
	The SuMo server: 3D search for protein functional sites -- Jambon et al. 21 (20): 3929 -- Bioinformatics [My Copy] Bioinformatics, Vol. 21, No. 20. (September 2005), pp. 3929-3930. by M. Jambon, O. Andrieu, C. Combet, G. Deleage, F. Delfaud, C. Geourjon posted to binding_pocket_recognition by tjimenez on 2005-10-25 14:09:45 as
	Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites -- Laurie and Jackson 21 (9): 1908 -- Bioinformatics [My Copy] Bioinformatics, Vol. 21, No. 9. (February 2005), pp. 1908-1916. by Alasdair T. R. Laurie, Richard M. Jackson posted to binding_pocket_recognition by tjimenez on 2005-09-01 15:36:51 as
	A new method to detect related function among proteins independent of sequence and fold homology. [My Copy] J Mol Biol, Vol. 323, No. 2. (18 October 2002), pp. 387-406. by S. Schmitt, D. Kuhn, G. Klebe posted to binding_pocket_recognition structure_to_function by tjimenez on 2005-05-24 16:58:14 as along with 1 person nickolay

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molecular_comparison	12
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tjimenez's binding_pocket_recognition [34 articles] Export Sort

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