tmmurali's Chen [17 articles] Export Sort

Recent papers posted to tmmurali's library by the author Chen. You can also see everyone's Chen.

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	Diversity and complexity in DNA recognition by transcription factors. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723. by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong F. Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk posted to transcriptional-regulatory-networks dataset-transcriptional-regulatory-network by tmmurali on 2009-05-15 04:44:22 as along with 25 people and 1 group vingron bsamal sebastien_vigneau nklee sconlan isimpson jbhiatt daforerog absterga mingzhi galka8_diploma fenghezi TRHvidsten ilyashl cambray rpatward tibbitts dpollard siebert JustinCrocker burak aalibes dipenps roys emptyhb RockmanLab
	Cellular function prediction and biological pathway discovery in Arabidopsis thaliana using microarray data. [My Copy] Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Vol. 4 (2004), pp. 2881-2884. by T. Joshi, Y. Chen, N. Alexandrov, D. Xu posted to gene-function-prediction-arabidopsis by tmmurali on 2009-02-06 22:20:32 as
	Genomic-scale prioritization of drug targets: the TDR Targets database [My Copy] Nature Reviews Drug Discovery, Vol. 7, No. 11. (17 October 2008), pp. 900-907. by Fernán Agüero, Bissan Al-Lazikani, Martin Aslett, et al.Matthew Berriman, Frederick S. Buckner, Robert K. Campbell, Santiago Carmona, Ian M. Carruthers, Edith A. W. Chan, Feng Chen, Gregory J. Crowther, Maria A. Doyle, Christiane Hertz-Fowler, Andrew L. Hopkins, Gregg Mcallister, Solomon Nwaka, John P. Overington, Arnab Pain, Gaia V. Paolini, Ursula Pieper, Stuart A. Ralph, Aaron Riechers, David S. Roos, Andrej Sali, Dhanasekaran Shanmugam, Takashi Suzuki, Wesley C. Van Voorhis, Christophe L. M. J. Verlinde posted to drug-discovery drug-prioritisation host-pathogen host-pathogen-dataset by tmmurali on 2008-10-31 14:57:52 as along with 5 people bicko ubcg08l sschurer richardbickerton guhjy
	Stromal gene expression predicts clinical outcome in breast cancer. [My Copy] Nature medicine, Vol. 14, No. 5. (May 2008), pp. 518-527. by Greg Finak, Nicholas Bertos, Francois Pepin, et al.Svetlana Sadekova, Margarita Souleimanova, Hong Zhao, Haiying Chen, Gulbeyaz Omeroglu, Sarkis Meterissian, Atilla Omeroglu, Michael Hallett, Morag Park posted to cancer-classification dataset-gene-expression-cancer by tmmurali on 2008-05-07 20:40:32 as along with 5 people Zephyrus jfr frohike ptrobajo aviad_work
	Discovering microRNAs from deep sequencing data using miRDeep [My Copy] Nat Biotech, Vol. 26, No. 4. (April 2008), pp. 407-415. by Marc R. Friedlander, Wei Chen, Catherine Adamidi, et al.Jonas Maaskola, Ralf Einspanier, Signe Knespel, Nikolaus Rajewsky posted to microrna by tmmurali on 2008-04-08 21:32:40 as along with 13 people and 3 groups hzoltan thegoose2 natstreet fishtank ealloza GustavoLacerda iris42 tharris giovanni stajich jfr heliopais gdb C. elegans / WormBase Mycology microRNA
	Protein Function Assignment through Mining Cross-Species Protein-Protein Interactions. [My Copy] PLoS ONE, Vol. 3, No. 2. (2008) by X. W. Chen, M. Liu, R. Ward posted to gene-function-prediction by tmmurali on 2008-02-22 19:06:05 as along with 2 people wilbur guhjy
	A search engine to identify pathway genes from expression data on multiple organisms [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007) by Chunnuan Chen, Matthew Weirauch, Corey Powell, Alexander Zambon, Joshua Stuart posted to gene-function-prediction pathway_perturbation_gene_set_based by tmmurali on 2008-02-22 18:40:15 as along with 7 people and 1 group thegoose2 tharris guhjy jfr rsandie waszak AlexanderPico C. elegans / WormBase
	Gene function prediction using labeled and unlabeled data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 57. by Xing M. Zhao, Yong Wang, Luonan Chen, Kazuyuki Aihara posted to gene-function-prediction by tmmurali on 2008-01-29 16:02:31 as along with 4 people sdvillal ptrobajo ironcamel mdstobbe
	Population Fitness and the Regulation of Escherichia coli Genes by Bacterial Viruses [My Copy] PLoS Biology, Vol. 3, No. 7. (1 July 2005), e229. by Ying Chen, Ido Golding, Satoshi Sawai, Ling Guo, Edward C. Cox posted to actex-phage by tmmurali on 2008-01-07 16:34:18 as
	MicroRNA expression signatures accurately discriminate acute lymphoblastic leukemia from acute myeloid leukemia. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 50. (11 December 2007), pp. 19971-19976. by Shuangli Mi, Jun Lu, Miao Sun, et al.Zejuan Li, Hao Zhang, Mary Beth B. Neilly, Yungui Wang, Zhijian Qian, Jie Jin, Yanming Zhang, Stefan K. Bohlander, Michelle M. Le Beau, Richard A. Larson, Todd R. Golub, Janet D. Rowley, Jianjun Chen posted to cancer-classification dataset_microrna_expression microrna_cancer by tmmurali on 2007-12-12 13:53:35 as along with 6 people tibbitts valeriehilgers frohike ealloza Alexander_Kanitz bootsy
	Assessment of the reliability of protein-protein interactions and protein function prediction. [My Copy] Pac Symp Biocomput (2003), pp. 140-151. by M. Deng, F. Sun, T. Chen posted to ppi_network_quality by tmmurali on 2007-12-09 04:56:35 as along with 2 people anf gurkanbebek
	Identification of the proliferation/differentiation switch in the cellular network of multicellular organisms. [My Copy] PLoS Comput Biol, Vol. 2, No. 11. (24 November 2006) by K. Xia, H. Xue, D. Dong, et al.S. Zhu, J. Wang, Q. Zhang, L. Hou, H. Chen, R. Tao, Z. Huang, Z. Fu, Y. G. Chen, J. D. Han posted to active-networks network-legos by tmmurali on 2007-12-04 18:32:38 as along with 2 people and 1 group isimpson jfr Bioinformatics
	Detecting functional modules in the yeast proteinprotein interaction network [My Copy] Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2283-2290. by Chen, Jingchun, Yuan, Bo posted to csb_survey_network_modules by tmmurali on 2007-11-29 03:42:17 as along with 4 people lawraga jfr maralena ellakat
	Database of mRNA gene expression profiles of multiple human organs. [My Copy] Genome Res, Vol. 15, No. 3. (March 2005), pp. 443-450. by C. G. Son, S. Bilke, S. Davis, et al.B. T. Greer, J. S. Wei, C. C. Whiteford, Q. R. Chen, N. Cenacchi, J. Khan posted to gene_expression_compendium_dataset by tmmurali on 2007-11-20 01:52:47 as along with 3 people JoannaScott BioGeek cassj
	AILUN: reannotating gene expression data automatically. [My Copy] Nature methods, Vol. 4, No. 11. (November 2007), pp. 879-879. by Rong Chen, Li Li, Atul J. Butte posted to id_mapping by tmmurali on 2007-10-31 18:40:49 as along with 4 people frohike jfr incovoma guhjy
	The synthetic genetic interaction spectrum of essential genes [My Copy] Nat Genet, Vol. 37, No. 10. (October 2005), pp. 1147-1152. by Armaity P. Davierwala, Jennifer Haynes, Zhijian Li, et al.Renee L. Brost, Mark D. Robinson, Lisa Yu, Sanie Mnaimneh, Huiming Ding, Hongwei Zhu, Yiqun Chen, Xin Cheng, Grant W. Brown, Charles Boone, Brenda J. Andrews, Timothy R. Hughes posted to genetic_interactions by tmmurali on 2005-09-29 17:16:33 as along with 7 people and 2 groups textoris okarsligil nirfriedman nickluscombe koller patrycjam patrycja_missiuro Bioinformatics EBI-regulation
	Genome-scale protein function prediction in yeast Saccharomyces cerevisiae through integrating multiple sources of high-throughput data. [My Copy] Pac Symp Biocomput (2005), pp. 471-482. by Y. Chen, D. Xu posted to gene-function-prediction by tmmurali on 2005-08-17 20:44:31 as along with 5 people and 2 groups okarsligil lfriedl balajis wnpx carlk kdl Bioinformatics

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actex	73
host-pathogen	46
reverse_engineering	34
gene-function-prediction	34
active-networks	23
actex-phage	23
transcriptional-regulatory-networks	21
biclustering	19
host-pathogen-dataset	18
functional_linkage_network	18
network_modules	15
ppi_network	15
network-legos	14
genetic_interactions	12
ppi_network_quality	10
ppi-prediction	10
cancer-classification	10
functional_enrichment	10
gene_expression_mining	9
network-models	9
vaccine-hiv	9
data_integration	9
network_structure	8
network_structure_motifs	8
promotors	8
dataset_interactions	8
homologues	7
nmf	7
microrna	7
csb_survey_network_models	7
microrna_targets	7
systems_biology	6
pathway_perturbation_gene_set_based	6
csb_survey_network_motifs	6
drug-discovery	6
dataset-transcriptional-regulatory-network	6
csb_survey_network_modules	6
microrna_combinatorial_control	5
graph-mining	5
transcription-modules	5
centrality	5
dynamic_molecular_shape	5
gene_expression_compendium_dataset	5
drug-resistance	4
csb_survey_active_networks	4
cell-cycle	4
gene_expression_compendium	4
aging	4
microrna_cancer	4
drug-prioritisation	4
network_evolution	4
stem-cells	4
dataset-metabolomics	3
graph-grammars	3
network-modules	3
learning_semi_supervised_graphs	3
id_mapping	3
dataset-ppi	3
svms	3
dataset-functional-annotation	3
pathway_perturbation_network_based	3
network-dynamics	2
comparative-genomics	2
gene_prediction	2
graph_partitioning	2
eqtl	2
clustering-spectral	2
systems-biology-education	2
treewidth	2
molecular_clock	2
clustering	2
viral-dependency-factors	2
dataset-signalling	2
csb_survey_clustering	2
network-visualisation	2
functional_annotation_structure_based	2
phenotype_maps	2
evolutionary_genomics	2
hiv	2
protein-quantification	1
cell-cell-interactions	1
gene-function-prediction-arabidopsis	1
protein-dna-interactions	1
protein-identification	1
synthetic-biology	1
epigenetics	1
graph_theory	1
bioinformatics-education	1
genome_wide_association_studies	1
drug-target	1
dataset_microrna_expression	1
gene_families	1
developmental-regulatory-networks	1
ontologies	1
csb_survey_biclustering	1
snps	1
dataset-gene-expression-cancer	1
operon_prediction	1
rnai	1
recommender_systems	1
infectious_disease	1
vaccine-virus	1
functional-linkage-networks	1
mmn_dataset	1
systems-biology	1
fixed_parameter_tractability	1
csb_survey_reverse_engineering	1
phosphoproteome	1
dataset-drug-target	1
genetic-interactions	1
nbt-primers	1
flows_and_cuts	1
dataset_nomenclature	1
research-methodology	1
environmental_sequencing	1
ppi-network	1
dense_subgraphs	1
time-series	1
vaccine-malaria	1
hypergraph	1
computational-neuroscience	1
gene-function-prediction-assessment	1
phenotype	1
gwas	1
hepatocytes	1
genomes	1
bayesian-networks	1
dataset-genetic-interactions	1
dataset_chemical_genomics	1
genome_cancer	1
cross_species_function_prediction	1
graphhopper	1
gene-finding	1
functional_linkage_network_cross_species	1
springer_survey_active_networks	1
mouse_microarray	1
next-generation-sequencing	1
satisfiability	1
non_model_organisms	1
disease-mechanisms	1
learning_one_class	1
cell-motion-model	1
non-coding-rna	1

tmmurali's Chen [17 articles] Export Sort

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