tmmurali's Ideker:T [15 articles] Export Sort

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	Genome-Wide Association Data Reveal a Global Map of Genetic Interactions among Protein Complexes [My Copy] PLoS Genet, Vol. 5, No. 12. (24 December 2009), e1000782. by Gregory Hannum, Rohith Srivas, Aude Guénolé, et al.Haico van Attikum, Nevan J. Krogan, Richard M. Karp, Trey Ideker posted to network-modules gwas genetic-interactions by tmmurali on 2009-12-24 03:59:40 as along with 2 people humburg peteruetz
	Evolutionarily Conserved Herpesviral Protein Interaction Networks [My Copy] PLoS Pathog, Vol. 5, No. 9. (4 September 2009), e1000570. by Even Fossum, Caroline C. Friedel, Seesandra V. Rajagopala, et al.Björn Titz, Armin Baiker, Tina Schmidt, Theo Kraus, Thorsten Stellberger, Christiane Rutenberg, Silpa Suthram, Sourav Bandyopadhyay, Dietlind Rose, Albrecht von Brunn, Mareike Uhlmann, Christine Zeretzke, Yu-An Dong, Hélène Boulet, Manfred Koegl, Susanne M. Bailer, Ulrich Koszinowski, Trey Ideker, Peter Uetz, Ralf Zimmer, Jürgen Haas posted to host-pathogen-dataset host-pathogen by tmmurali on 2009-09-29 01:50:28 as along with 2 people pauldobson reyez
	Discovering regulatory and signalling circuits in molecular interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1, No. suppl_1. (1 July 2002), pp. S233-240. by Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel posted to active-networks csb_survey_active_networks by tmmurali on 2009-07-24 20:38:58 as along with 15 people and 2 groups myzhang akshayk wilbur arne junehlee cswinburne isimpson yaredo dragonrez okarsligil lfriedl noano koller frohike carlk kdl Bioinformatics
	Host cell factors in HIV replication: meta-analysis of genome-wide studies. [My Copy] PLoS pathogens, Vol. 5, No. 5. (29 May 2009), e1000437. by Frederic D. Bushman, Nirav Malani, Jason Fernandes, et al.Iván D'Orso, Gerard Cagney, Tracy L. Diamond, Honglin Zhou, Daria J. Hazuda, Amy S. Espeseth, Renate König, Sourav Bandyopadhyay, Trey Ideker, Stephen P. Goff, Nevan J. Krogan, Alan D. Frankel, John A. Young, Sumit K. Chanda posted to dataset-functional-annotation viral-dependency-factors by tmmurali on 2009-05-29 21:45:18 as along with 4 people and 1 group memerman wsjames poirel dansullivanblk Oxford Virology
	Inferring Pathway Activity toward Precise Disease Classification [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000217. by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee posted to cancer-classification pathway_perturbation_gene_set_based by tmmurali on 2008-11-29 16:12:16 as along with 13 people frohike rschulz isimpson yaredo ipark-kaist jfr aviad_work ajbattle zufar carlk renatomilani dragonrez ptrobajo
	Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 405-410. by Assen Roguev, Sourav Bandyopadhyay, Martin Zofall, et al.Ke Zhang, Tamas Fischer, Sean R. Collins, Hongjing Qu, Michael Shales, Han-Oh Park, Jacqueline Hayles, Kwang-Lae Hoe, Dong-Uk Kim, Trey Ideker, Shiv I. Grewal, Jonathan S. Weissman, Nevan J. Krogan posted to dataset-genetic-interactions genetic_interactions by tmmurali on 2008-10-17 15:52:22 as along with 15 people dakelley biomcgary ajbattle nzm Keksle jbhiatt lflorez roys sjung zwang marck caseybrown emptyhb bpcusack brembs
	A systems approach to mapping DNA damage response pathways. [My Copy] Science (New York, N.Y.), Vol. 312, No. 5776. (19 May 2006), pp. 1054-1059. by Christopher T. Workman, H. Craig Mak, Scott McCuine, et al.Jean-Bosco B. Tagne, Maya Agarwal, Owen Ozier, Thomas J. Begley, Leona D. Samson, Trey Ideker posted to transcriptional-regulatory-networks actex by tmmurali on 2008-04-23 06:29:29 as along with 10 people frohike nzm arsyed roys isimpson biozhang2001 jfr nirfriedman cconboy koller
	Protein networks in disease. [My Copy] Genome research, Vol. 18, No. 4. (1 April 2008), pp. 644-652. by Trey Ideker, Roded Sharan posted to ppi_network by tmmurali on 2008-04-01 19:32:16 as along with 27 people frohike shikin carlk isimpson chica saket zufar kaarsinogen giovenko guhjy balicea Borelli jwdietrich bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo raiyar zwang
	Validation and refinement of gene-regulatory pathways on a network of physical interactions. [My Copy] Genome Biol, Vol. 6, No. 7. (2005) by C. H. Yeang, H. C. Mak, S. McCuine, C. Workman, T. Jaakkola, T. Ideker posted to actex by tmmurali on 2008-03-28 23:57:34 as along with 15 people and 1 group frohike kaarsinogen isimpson hplatero snuppepuppan abhik textoris wnpx noano koller ccr cdppublications AlexanderPico carlk jago CDP
	Physical network models. [My Copy] J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 243-262. by C. H. Yeang, T. Ideker, T. Jaakkola posted to network-models by tmmurali on 2008-03-28 23:45:29 as along with 3 people wnpx noano koller
	A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 8. (26 February 2008), pp. 2934-2939. by K. Tan, H. Feizi, C. Luo, S. H. Fan, T. Ravasi, T. G. Ideker posted to transcriptional-regulatory-networks dataset-transcriptional-regulatory-network by tmmurali on 2008-02-26 19:35:25 as along with 3 people HawkinsJohnC djkt pmendes
	A direct comparison of protein interaction confidence assignment schemes [My Copy] BMC Bioinformatics, Vol. 7 (26 July 2006), 360. by Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker posted to ppi_network_quality by tmmurali on 2007-12-09 04:58:56 as along with 7 people and 1 group anf roys lfriedl balajis gurkanbebek IbnBio iris_2001 kdl
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby-Joe Breitkreutz, Gary C. Hon, Chad L. Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G. Troyanskya, Trey Ideker, Kara Dolinski, Nizar N. Batada, Mike Tyers posted to functional_linkage_network by tmmurali on 2006-06-13 15:14:42 as along with 18 people and 3 groups carlk snuppepuppan lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz shikin s041629 pmendes mtruksa chasmand kdl EBI-regulation GeneGo
	Modeling cellular machinery through biological network comparison. [My Copy] Nature biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433. by Roded Sharan, Trey Ideker posted to data_integration active-networks network-legos by tmmurali on 2006-04-07 16:52:34 as along with 22 people and 1 group chica akshayk sergiun cswinburne kaarsinogen isimpson kuhn tuck yas balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel mingzhi vietanh0 cdeane carlk T_lab
	The Plasmodium protein network diverges from those of other eukaryotes [My Copy] Nature, Vol. 438, No. 7064. (03 November 2005), pp. 108-112. by Silpa Suthram, Taylor Sittler, Trey Ideker posted to functional_linkage_network ppi_network gene-function-prediction by tmmurali on 2005-11-02 22:55:22 as along with 5 people and 1 group roys dragonrez okarsligil rjarekm gurkanbebek Bioinformatics

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actex	73
host-pathogen	46
reverse_engineering	34
gene-function-prediction	34
active-networks	23
actex-phage	23
transcriptional-regulatory-networks	21
biclustering	19
host-pathogen-dataset	18
functional_linkage_network	18
network_modules	15
ppi_network	15
network-legos	14
genetic_interactions	12
ppi_network_quality	10
ppi-prediction	10
cancer-classification	10
functional_enrichment	10
gene_expression_mining	9
network-models	9
vaccine-hiv	9
data_integration	9
network_structure	8
network_structure_motifs	8
promotors	8
dataset_interactions	8
homologues	7
nmf	7
microrna	7
csb_survey_network_models	7
microrna_targets	7
systems_biology	6
pathway_perturbation_gene_set_based	6
csb_survey_network_motifs	6
drug-discovery	6
dataset-transcriptional-regulatory-network	6
csb_survey_network_modules	6
microrna_combinatorial_control	5
graph-mining	5
transcription-modules	5
centrality	5
dynamic_molecular_shape	5
gene_expression_compendium_dataset	5
drug-resistance	4
csb_survey_active_networks	4
cell-cycle	4
gene_expression_compendium	4
aging	4
microrna_cancer	4
drug-prioritisation	4
network_evolution	4
stem-cells	4
dataset-metabolomics	3
graph-grammars	3
network-modules	3
learning_semi_supervised_graphs	3
id_mapping	3
dataset-ppi	3
svms	3
dataset-functional-annotation	3
pathway_perturbation_network_based	3
network-dynamics	2
comparative-genomics	2
gene_prediction	2
graph_partitioning	2
eqtl	2
clustering-spectral	2
systems-biology-education	2
treewidth	2
molecular_clock	2
clustering	2
viral-dependency-factors	2
dataset-signalling	2
csb_survey_clustering	2
network-visualisation	2
functional_annotation_structure_based	2
phenotype_maps	2
evolutionary_genomics	2
hiv	2
protein-quantification	1
cell-cell-interactions	1
gene-function-prediction-arabidopsis	1
protein-dna-interactions	1
protein-identification	1
synthetic-biology	1
epigenetics	1
graph_theory	1
bioinformatics-education	1
genome_wide_association_studies	1
drug-target	1
dataset_microrna_expression	1
gene_families	1
developmental-regulatory-networks	1
ontologies	1
csb_survey_biclustering	1
snps	1
dataset-gene-expression-cancer	1
operon_prediction	1
rnai	1
recommender_systems	1
infectious_disease	1
vaccine-virus	1
functional-linkage-networks	1
mmn_dataset	1
systems-biology	1
fixed_parameter_tractability	1
csb_survey_reverse_engineering	1
phosphoproteome	1
dataset-drug-target	1
genetic-interactions	1
nbt-primers	1
flows_and_cuts	1
dataset_nomenclature	1
research-methodology	1
environmental_sequencing	1
ppi-network	1
dense_subgraphs	1
time-series	1
vaccine-malaria	1
hypergraph	1
computational-neuroscience	1
gene-function-prediction-assessment	1
phenotype	1
gwas	1
hepatocytes	1
genomes	1
bayesian-networks	1
dataset-genetic-interactions	1
dataset_chemical_genomics	1
genome_cancer	1
cross_species_function_prediction	1
graphhopper	1
gene-finding	1
functional_linkage_network_cross_species	1
springer_survey_active_networks	1
mouse_microarray	1
next-generation-sequencing	1
satisfiability	1
non_model_organisms	1
disease-mechanisms	1
learning_one_class	1
cell-motion-model	1
non-coding-rna	1

tmmurali's Ideker:T [15 articles] Export Sort

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