tmmurali's reverse_engineering [34 articles] Export

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	A boosting approach to structure learning of graphs with and without prior knowledge [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2929-2936. by Shahzia Anjum, Arnaud Doucet, Chris C. Holmes posted to reverse_engineering functional_linkage_network by tmmurali on 2009-11-06 18:17:35 as along with 7 people mwpeters8182 hughitt1 fastjoe23 TRHvidsten rdiaz phoenixzxl frohike
	Incorporating Existing Network Information into Gene Network Inference [My Copy] PLoS ONE, Vol. 4, No. 8. (27 August 2009), e6799. by Scott Christley, Qing Nie, Xiaohui Xie posted to reverse_engineering by tmmurali on 2009-09-02 23:20:24 as along with 5 people rdiaz coffeerv TRHvidsten installe frohike
	KELLER: estimating time-varying interactions between genes [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i128-136. by Le Song, Mladen Kolar, Eric P. Xing posted to reverse_engineering by tmmurali on 2009-06-10 21:10:07 as along with 7 people and 1 group rdiaz arne yaredo leemond31 roys dswan mstumpf Bioinformatics
	Listen to Genes: Dealing with Microarray Data in the Frequency Domain [My Copy] PLoS ONE, Vol. 4, No. 4. (6 April 2009), e5098. by Jianfeng Feng, Dongyun Yi, Ritesh Krishna, Shuixia Guo, Vicky Buchanan-Wollaston posted to actex reverse_engineering by tmmurali on 2009-04-13 04:53:01 as along with 2 people Borelli rdiaz
	Reverse Engineering Time Discrete Finite Dynamical Systems: A Feasible Undertaking? [My Copy] PLoS ONE, Vol. 4, No. 3. (19 March 2009), e4939. by Edgar Delgado-Eckert posted to actex reverse_engineering by tmmurali on 2009-03-25 20:40:54 as along with 1 person rdiaz
	A copula method for modeling directional dependence of genes. [My Copy] BMC bioinformatics, Vol. 9 (01 May 2008), 225. by Jong-Min M. Kim, Yoon-Sung S. Jung, Engin A. Sungur, Kap-Hoon H. Han, Changyi Park, Insuk Sohn posted to reverse_engineering by tmmurali on 2008-09-27 03:46:52 as along with 5 people frohike donalddunbar bertelsen guhjy chodar
	Network inference using informative priors [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (2008), pp. 14313-14318. by Sach Mukherjee, Terence P. Speed posted to reverse_engineering by tmmurali on 2008-09-24 02:58:16 as along with 10 people and 1 group zufar bertelsen ggallone guhjy Borelli ptrobajo jfr markstoehr stringertheory roys Jarman Lab
	Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 50. (12 December 2006), pp. 19033-19038. by Timothy R. Lezon, Jayanth R. Banavar, Marek Cieplak, Amos Maritan, Nina V. Fedoroff posted to reverse_engineering by tmmurali on 2008-09-01 19:49:30 as along with 8 people mjoach TRHvidsten yaredo jfr aswin hmk iris_2001 macavity1g
	Embedding mRNA Stability in Correlation Analysis of Time-Series Gene Expression Data [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000141. by Lorenzo Farina, Alberto De Santis, Samanta Salvucci, Giorgio Morelli, Ida Ruberti posted to reverse_engineering by tmmurali on 2008-08-30 14:00:47 as along with 1 person ptrobajo
	Geometric interpretation of gene coexpression network analysis. [My Copy] PLoS computational biology, Vol. 4, No. 8. (15 August 2008), e1000117. by Steve Horvath, Jun Dong posted to network-models reverse_engineering by tmmurali on 2008-08-30 13:51:43 as along with 22 people jeremymiller zufar dolchan sficklin isimpson rdiaz guhjy cswinburne jfr ptrobajo pengchy nolodie druvus aramesh2 kengg roys Ema Borelli Totobox AbnerCYH davidchavalarias caseybrown
	How to infer gene networks from expression profiles. [My Copy] Molecular systems biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to reverse_engineering by tmmurali on 2008-08-12 16:15:04 as along with 39 people and 3 groups frohike Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia Jarman Lab EBI-regulation Plantandetc
	An empirical Bayes approach to inferring large-scale gene association networks. [My Copy] Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 754-764. by J. Schäfer, K. Strimmer posted to reverse_engineering by tmmurali on 2008-08-07 20:24:55 as along with 5 people and 1 group eldan gangli wnpx Ao_Li2007 StatAnika tulip
	Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1640-1647. by Nicola Soranzo, Ginestra Bianconi, Claudio Altafini posted to actex reverse_engineering by tmmurali on 2008-08-07 19:55:52 as along with 6 people meanerelk ptrobajo fastjoe23 statnet heliopais roys
	Discerning static and causal interactions in genome-wide reverse engineering problems [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1510-1515. by Mattia Zampieri, Nicola Soranzo, Claudio Altafini posted to actex reverse_engineering by tmmurali on 2008-08-06 18:24:05 as along with 7 people meanerelk dolchan rdiaz roys guhjy verdicchio balicea
	Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations [My Copy] PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e69. by Jun Zhu, Matthew C. Wiener, Chunsheng Zhang, et al.Arthur Fridman, Eric Minch, Pek Y. Lum, Jeffrey R. Sachs, Eric E. Schadt posted to actex data_integration reverse_engineering by tmmurali on 2008-07-07 21:18:33 as along with 8 people roys nicholso brianb jfr hms jo_davies semrich beete
	Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. [My Copy] Nature genetics, Vol. 40, No. 7. (15 July 2008), pp. 854-861. by Jun Zhu, Bin Zhang, Erin N. Smith, et al.Becky Drees, Rachel B. Brem, Leonid Kruglyak, Roger E. Bumgarner, Eric E. Schadt posted to transcriptional-regulatory-networks actex data_integration reverse_engineering by tmmurali on 2008-06-18 14:56:33 as along with 19 people and 1 group JoeBanks arider1 megraw TRHvidsten siebert ggallone jo_davies suteedee burak realzhang kengg maralena ptrobajo guhjy roys marck caseybrown djkt srp33 Jarman Lab
	A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast [My Copy] Journal of Computational Biology, Vol. 15, No. 4. (2008), pp. 393-405. by Vladimir Filkov, Nameeta Shah posted to transcriptional-regulatory-networks actex reverse_engineering by tmmurali on 2008-05-09 05:30:23 as along with 1 person eskay
	Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering [My Copy] Genome Res. (25 April 2008), gr.073601.107. by Giusy Della Gatta, Mukesh Bansal, Alberto Ambesi-Impiombato, Dario Antonini, Caterina Missero, Diego di Bernardo posted to transcriptional-regulatory-networks actex reverse_engineering by tmmurali on 2008-04-29 22:17:55 as along with 1 person roys
	Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects [My Copy] Journal of Computational Biology, Vol. 14, No. 9. (2007), pp. 1217-1228. by Achim Tresch, T. Beissbarth, H. Sultmann, R. Kuner, A. Poustka, A. Buness posted to actex reverse_engineering by tmmurali on 2008-04-20 21:23:04 as along with 2 people systemsbiology ptrobajo
	Bayesian Network Analysis of Signaling Networks: A Primer [My Copy] Sci. STKE, Vol. 2005, No. 281. (26 April 2005), pl4. by Dana Pe'er posted to actex reverse_engineering by tmmurali on 2008-04-17 17:08:41 as along with 8 people abhishek_tiwari frohike ptrobajo saman_vp Borelli ryang wnpx jhatrimatri
	Artificial gene networks for objective comparison of analysis algorithms [My Copy] Bioinformatics In Bioinformatics, Vol. 19, No. suppl_2. (27 September 2003), pp. ii122-129. by Pedro Mendes, Wei Sha, Keying Ye posted to actex reverse_engineering by tmmurali on 2008-04-16 08:00:12 as along with 9 people and 2 groups meanerelk fastjoe23 poirel tonamswish kaarsinogen camster dragonrez lfriedl pmendes dbk-lab kdl
	Context-sensitive data integration and prediction of biological networks. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 17. (1 September 2007), pp. 2322-2330. by Chad L. Myers, Olga G. Troyanskaya posted to reverse_engineering by tmmurali on 2008-04-13 03:07:23 as along with 8 people frohike rdiaz grahamc iris_2001 nedwards shung carlk guhjy
	Non-transcriptional pathway features reconstructed from secondary effects of RNA interference. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 21. (1 November 2005), pp. 4026-4032. by F. Markowetz, J. Bloch, R. Spang posted to actex reverse_engineering by tmmurali on 2008-04-12 17:39:38 as
	Computational identification of cellular networks and pathways [My Copy] Mol. BioSyst., Vol. 3, No. 7. (July 2007), pp. 478-482. by Florian Markowetz, Olga G. Troyanskaya posted to active-networks reverse_engineering by tmmurali on 2008-04-12 17:28:00 as along with 3 people arsyed guhjy carlk
	A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas [My Copy] Mol Syst Biol, Vol. 4 (12 February 2008) by Kartik M. Mani, Celine Lefebvre, Kai Wang, et al.Wei K. Lim, Katia Basso, Riccardo Dalla-Favera, Andrea Califano posted to actex active-networks reverse_engineering by tmmurali on 2008-04-12 17:24:07 as along with 7 people ipark-kaist ihpark jfr ealloza shikin dap5087 dragonrez
	ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. [My Copy] BMC Bioinformatics, Vol. 7 Suppl 1 (2006) by A. A. Margolin, I. Nemenman, K. Basso, et al.C. Wiggins, G. Stolovitzky, R. Dalla Favera, A. Califano posted to reverse_engineering by tmmurali on 2008-04-04 04:15:17 as along with 18 people frohike dolchan tonamswish Neeperando akraemer APRegier verdicchio behindtherabbit kaarsinogen mbehbah1 druvus giovenko ptrobajo kentsis jfr shigepong natstreet heliopais
	Reverse-engineering transcription control networks [My Copy] Physics of Life Reviews, Vol. 2, No. 1. (March 2005), pp. 65-88. by T. Gardner, J. Faith posted to reverse_engineering by tmmurali on 2008-03-29 00:01:02 as along with 3 people antonkratz rklancer heliopais
	On the Sparse Reconstruction of Gene Networks [My Copy] Journal of Computational Biology, Vol. 15, No. 1. (2008), pp. 21-30. by M. Andrecut, S. A. Kauffman posted to reverse_engineering by tmmurali on 2008-02-14 15:15:10 as
	MetaReg: a platform for modeling, analysis and visualization of biological systems using large-scale experimental data. [My Copy] Genome biology, Vol. 9, No. 1. (2 January 2008), R1. by Igor Ulitsky, Irit Gat-Viks, Ron Shamir posted to actex reverse_engineering by tmmurali on 2008-01-30 15:41:00 as along with 4 people guhjy waszak ptrobajo jfr
	Inferring cellular networks - a review [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007), S5. by Florian Markowetz, Rainer Spang posted to actex reverse_engineering by tmmurali on 2008-01-07 01:58:50 as along with 15 people jaspervoskuilen antonkratz daforerog chica ocs roys cswinburne ndiaz edwardmorrissey guhjy shigepong dejori heliopais bertelsen czeller
	Learning Factor Graphs in Polynomial Time and Sample Complexity [My Copy] J. Mach. Learn. Res., Vol. 7 (2006), pp. 1743-1788. by Pieter Abbeel, Daphne Koller, Andrew Y. Ng posted to actex reverse_engineering by tmmurali on 2008-01-06 22:01:06 as
	Dialogue on Reverse-Engineering Assessment and Methods: The DREAM of High-Throughput Pathway Inference [My Copy] Annals of the New York Academy of Sciences, Vol. 1115, No. 1. (December 2007), pp. 1-22. by Gustavo Stolovitzky, Don Monroe, Andrea Califano posted to actex reverse_engineering by tmmurali on 2007-12-24 17:27:05 as along with 3 people bertelsen guhjy roys
	Extracting Three-way Gene Interactions from Microarray Data. [My Copy] Bioinformatics (5 October 2007) by Jiexin Zhang, Yuan Ji, Li Zhang posted to genetic_interactions reverse_engineering by tmmurali on 2007-11-17 18:29:45 as along with 3 people jfr shigepong waszak
	Construction of a Reference Gene Association Networkf rom Multiple Profling Data: Application to Data Analysis [My Copy] Bioinformatics (10 September 2007), btm423. by Duygu Ucar, Isaac Neuhaus, Petra Ross-Macdonald, et al.Charles Tilford, Srinivasan Parthasarathy, Nathan Siemers, Rui-Ru Ji posted to reverse_engineering by tmmurali on 2007-10-31 00:02:03 as along with 2 people guhjy rdiaz

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actex	73
host-pathogen	46
reverse_engineering	34
gene-function-prediction	34
actex-phage	23
active-networks	23
transcriptional-regulatory-networks	21
biclustering	19
functional_linkage_network	18
host-pathogen-dataset	18
network_modules	15
ppi_network	15
network-legos	14
genetic_interactions	12
cancer-classification	10
functional_enrichment	10
ppi-prediction	10
ppi_network_quality	10
network-models	9
vaccine-hiv	9
gene_expression_mining	9
data_integration	9
dataset_interactions	8
network_structure_motifs	8
network_structure	8
promotors	8
nmf	7
microrna_targets	7
csb_survey_network_models	7
microrna	7
homologues	7
dataset-transcriptional-regulatory-network	6
systems_biology	6
csb_survey_network_modules	6
drug-discovery	6
csb_survey_network_motifs	6
pathway_perturbation_gene_set_based	6
microrna_combinatorial_control	5
centrality	5
graph-mining	5
gene_expression_compendium_dataset	5
dynamic_molecular_shape	5
transcription-modules	5
drug-prioritisation	4
csb_survey_active_networks	4
stem-cells	4
gene_expression_compendium	4
drug-resistance	4
aging	4
microrna_cancer	4
cell-cycle	4
network_evolution	4
dataset-functional-annotation	3
svms	3
graph-grammars	3
pathway_perturbation_network_based	3
learning_semi_supervised_graphs	3
dataset-metabolomics	3
id_mapping	3
dataset-ppi	3
gene_prediction	2
phenotype_maps	2
systems-biology-education	2
treewidth	2
comparative-genomics	2
functional_annotation_structure_based	2
csb_survey_clustering	2
evolutionary_genomics	2
hiv	2
clustering-spectral	2
dataset-signalling	2
viral-dependency-factors	2
network-visualisation	2
network-dynamics	2
graph_partitioning	2
eqtl	2
molecular_clock	2
clustering	2
satisfiability	1
non_model_organisms	1
disease-mechanisms	1
gene-function-prediction-assessment	1
dataset_chemical_genomics	1
genome_cancer	1
protein-quantification	1
cross_species_function_prediction	1
gene-function-prediction-arabidopsis	1
protein-dna-interactions	1
gene-finding	1
springer_survey_active_networks	1
learning_one_class	1
graph_theory	1
cell-motion-model	1
genome_wide_association_studies	1
drug-target	1
dataset_microrna_expression	1
network-modules	1
gene_families	1
non-coding-rna	1
cell-cell-interactions	1
ontologies	1
protein-identification	1
synthetic-biology	1
dataset-gene-expression-cancer	1
epigenetics	1
operon_prediction	1
rnai	1
hypergraph	1
recommender_systems	1
computational-neuroscience	1
bioinformatics-education	1
vaccine-virus	1
functional-linkage-networks	1
next-generation-sequencing	1
mmn_dataset	1
systems-biology	1
dataset-genetic-interactions	1
csb_survey_biclustering	1
snps	1
phosphoproteome	1
dataset-drug-target	1
fixed_parameter_tractability	1
nbt-primers	1
dataset_nomenclature	1
environmental_sequencing	1
flows_and_cuts	1
dense_subgraphs	1
csb_survey_reverse_engineering	1
bayesian-networks	1
ppi-network	1
vaccine-malaria	1
graphhopper	1
hepatocytes	1
functional_linkage_network_cross_species	1
genomes	1
mouse_microarray	1
phenotype	1
developmental-regulatory-networks	1
infectious_disease	1

tmmurali's reverse_engineering [34 articles] Export

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