tomhebbron's model [58 articles] Export

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	THE ECOLOGY AND GENETICS OF MICROBIAL DIVERSITY [My Copy] Annual Review of Microbiology, Vol. 58, No. 1. (2004), pp. 207-231. by Rees Kassen, Paul B. Rainey posted to model microbial genetics evolution ecology by tomhebbron on 2009-11-03 10:01:17 as along with 2 people aaltenburger rabu
	The Effect of Adaptive Anti-Predator Behavior on Exploitative Competition and Mutualism between Predators [My Copy] Oikos, Vol. 68, No. 3. (1993), pp. 549-559. by Hiroyuki Matsuda, Peter A. Abrams, Michio Hori posted to predation model food-web ecology antipredation by tomhebbron on 2009-11-03 07:03:05 as
	Host-Parasite Relations and Random Zero-Sum Games: The Stabilizing Effect of Strategy Diversification [My Copy] The American Naturalist, Vol. 133, No. 4. (1989), pp. 533-552. by Joel E. Cohen, Charles M. Newman posted to model immune host-parasite game-theory coevolution by tomhebbron on 2009-11-02 17:09:08 as
	Central role of danger signals in sepsis, trauma, and hemorrhage: insights from mathematical simulations [My Copy] Journal of Critical Care, Vol. 20, No. 4. (December 2005), pp. 390-390. by Y. Vodovotz, T. Billiar, C. Lagoa, et al.J. Bartels, A. Baratt, J. Rubin, M. Fink, G. Clermont posted to simulation_model ode model danger-signal by tomhebbron on 2009-10-30 12:55:26 as
	Several necessary conditions for the evolution of complex forms of life in an artificial environment [My Copy] Artif. Life, Vol. 9, No. 2. (2003), pp. 153-174. by Hideaki Suzuki, Naoaki Ono, Kikuo Yuta posted to tierra review model criteria avida alife by tomhebbron on 2009-10-30 11:52:34 as along with 1 person jotwin
	An approach to the synthesis of life [My Copy] In Artificial Life II: SFI Studies in the Sciences of Complexity (1991), pp. 371-408. by T. S. Ray edited by C. G. Langton, C. Taylor, Doyne J. Farmer, S. Rasmussen posted to tierra model alife by tomhebbron on 2009-10-30 11:39:37 as along with 1 person and 1 group dlobo GEB
	The role of productivity in the ecological and evolutionary dynamics of predator-prey interaction [My Copy] (2009) by Ville-Petri Friman posted to predator_prey model evolution ecology dynamics by tomhebbron on 2009-10-26 16:35:32 as
	ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 330-340. by Francesco Pappalardo, Mark D. Halling-Brown, Nicolas Rapin, et al.Ping Zhang, Davide Alemani, Andrew Emerson, Paola Paci, Patrice Duroux, Marzio Pennisi, Arianna Palladini, Olivo Miotto, Daniel Churchill, Elda Rossi, Adrian J. Shepherd, David S. Moss, Filippo Castiglione, Massimo Bernaschi, Marie-Paule Lefranc, Soren Brunak, Santo Motta, Pier-Luigi Lollini, Kaye E. Basford, Vladimir Brusic posted to vaccine_discovery systems_biology simulation model medicine immunology grid_computing artificial-immune-systems applications by tomhebbron on 2009-09-29 19:33:01 as along with 2 people Scis0000002 VGreiff
	Predation, competition, and nutrient recycling: a stoichiometric approach with multiple nutrients [My Copy] Journal of Theoretical Biology, Vol. 229, No. 1. (July 2004), pp. 31-43. by J. Grover posted to predation nutrients model evolution ecology competition by tomhebbron on 2009-09-07 21:34:41 as
	The clonal selection theory of acquired immunity [My Copy] (1959) by F. M. Burnet posted to theory model immune history by tomhebbron on 2009-09-02 19:16:04 as
	Immune information, self-organization and meaning [My Copy] International Immunology, Vol. 10, No. 6. (1 June 1998), pp. 711-717. by H. Atlan, I. R. Cohen posted to theory model immune cognition by tomhebbron on 2009-09-02 15:45:28 as along with 2 people VGreiff alfirk
	Evolving Multi-cellular Artificial Life [My Copy] In In (1994), pp. 283-288. by Kurt Thearling, Thomas S. Ray posted to tierra multicellular model ecology alife by tomhebbron on 2009-09-02 14:01:47 as
	Predators, Parasitoids and Pathogens: Species Richness, Trophic Generality and Body Sizes in a Natural Food Web [My Copy] Journal of Animal Ecology, Vol. 69, No. 1. (2000), pp. 1-15. by J. Memmott, N. D. Martinez, J. E. Cohen posted to trophism predatorprey predation pathogen model immune evolution ecology by tomhebbron on 2009-09-02 13:58:01 as
	The self/nonself discrimination: reconstructing a cabbage from sauerkraut. [My Copy] Research in immunology, Vol. 143, No. 3. (r 1992), pp. 323-334. by M. Cohn posted to theory self model immune by tomhebbron on 2009-09-01 22:42:51 as
	Nature versus nurture: Contributions of developmental programming and the microenvironment to B cell tolerance [My Copy] Immunol Cell Biol, Vol. 76, No. 4. (July 1998), pp. 369-372. by Barbara de St Groth posted to tolerance theory tcell model immune history by tomhebbron on 2009-09-01 22:12:32 as
	Response to Melvin Cohn [My Copy] Theoretical Medicine and Bioethics, Vol. 19, No. 5. (1 September 1998), pp. 485-494. by Alfred I. Tauber posted to theory self model immune by tomhebbron on 2009-09-01 22:10:40 as
	Activation rules: the two-signal theories of immune activation [My Copy] Nat Rev Immunol, Vol. 2, No. 6. (June 2002), pp. 439-446. by Alan G. Baxter, Philip D. Hodgkin posted to two-signal theory tcell model immune by tomhebbron on 2009-09-01 22:08:09 as
	Adaptive dynamic networks as models for the immune system and autocatalytic sets. [My Copy] Annals of the New York Academy of Sciences, Vol. 504 (1987), pp. 118-131. by J. D. Farmer, S. A. Kauffman, N. H. Packard, A. S. Perelson posted to artificial-immune-systems network model immune by tomhebbron on 2009-09-01 18:58:28 as along with 1 person VGreiff
	An ancient system of host defense [My Copy] Current Opinion in Immunology, Vol. 10, No. 1. (February 1998), pp. 12-15. by R. Medzhitov posted to adaptive_immune_system model innate-immune evolution by tomhebbron on 2009-09-01 14:15:45 as
	Evolvable self-replicating molecules in an artificial chemistry [My Copy] Artif. Life, Vol. 8, No. 4. (2002), pp. 341-356. by Tim J. Hutton posted to model autopoiesis artificial-chemistry by tomhebbron on 2009-09-01 12:59:31 as along with 2 people adamnellis Doug
	Evolution as a Self-Organized Critical Phenomenon [My Copy] Proceedings of the National Academy of Sciences, Vol. 92, No. 11. (23 May 1995), pp. 5209-5213. by K. Sneppen, P. Bak, H. Flyvbjerg, M. H. Jensen posted to self-organisation msc-thesis model evolution by tomhebbron on 2009-08-21 16:22:40 as along with 1 person VGreiff
	Self-organized similarity, the evolutionary emergence of groups of similar species. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 16. (18 April 2006), pp. 6230-6235. by Marten Scheffer, Egbert H. van Nes posted to speciation model evolution emergence ecology coevolution by tomhebbron on 2009-08-21 09:23:41 as along with 2 people and 1 group cmm mullonc FAB-lab
	A spin-glass model of chemical evolution [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. 168, No. 1. (1 September 1990), pp. 619-625. by L. Peliti posted to spin-glass model evolution chemistry artificial-chemistry by tomhebbron on 2009-08-19 09:40:25 as along with 1 person VGreiff
	Natural selection in chemical evolution [My Copy] Journal of Theoretical Biology, Vol. 247, No. 1. (07 July 2007), pp. 152-167. by Chrisantha Fernando, Jonathan Rowe posted to trophism model evolution artificial-chemistry by tomhebbron on 2009-08-19 09:39:03 as along with 1 person VGreiff
	The 'complete' idiotype network is an absurd immune system [My Copy] Immunology Today, Vol. 7, No. 4. (April 1986), pp. 100-101. by R. Langman posted to network model immune idiotypic by tomhebbron on 2009-08-17 12:35:23 as
	Theoretical advances in artificial immune systems [My Copy] Theoretical Computer Science, Vol. 403, No. 1. (20 August 2008), pp. 11-32. by J. Timmis, A. Hone, T. Stibor, E. Clark posted to theory review model artificial-immune-systems by tomhebbron on 2009-08-17 11:56:00 as along with 2 people VGreiff sugarexpletive
	Biomarkers, self-antigens and the immunological homunculus. [My Copy] Journal of autoimmunity In Pathophysiology of Autoimmune Disease, Vol. 29, No. 4. (December 2007), pp. 246-249. by Irun R. Cohen posted to adaptive_immune_system self model immune homunculus biomarker autoimmune by tomhebbron on 2009-08-16 23:07:37 as along with 2 people VGreiff awooga
	The cognitive paradigm and the immunological homunculus. [My Copy] Immunology today, Vol. 13, No. 12. (December 1992), pp. 490-494. by I. R. Cohen posted to model immune homunculus clonal-selection-theory by tomhebbron on 2009-08-16 23:02:45 as
	Commentary: Terra firma: a retreat from "danger" [My Copy] J Immunol, Vol. 157, No. 10. (15 November 1996), pp. 4273-4276. by R. E. Langman, M. Cohn posted to danger-theory immune model by tomhebbron on 2009-08-06 12:57:13 as along with 1 person VGreiff
	A Model of the Immune Network with B-T Cell Co-operation. I—Prototypical Structures and Dynamics [My Copy] Journal of Theoretical Biology, Vol. 182, No. 4. (21 October 1996), pp. 513-529. by J. Carneiro posted to immune model network by tomhebbron on 2009-08-03 12:30:54 as along with 1 person VGreiff
	A Model of the Immune Network with B-T Cell Co-operation. II—The Simulation of Ontogenesis [My Copy] Journal of Theoretical Biology, Vol. 182, No. 4. (21 October 1996), pp. 531-547. by J. Carneiro posted to immune model network by tomhebbron on 2009-08-03 12:30:27 as along with 1 person VGreiff
	Immune system protects integrity of tissues [My Copy] Molecular Immunology, Vol. 37, No. 10. (August 2000), pp. 563-569. by Z. Dembic posted to danger-theory immune integrity model by tomhebbron on 2009-08-03 11:07:59 as along with 1 person VGreiff
	Why the First Glass of Wine Is Better Than the Seventh [My Copy] Artificial Immune Systems (2005), pp. 100-111. by Hugues Bersini posted to artificial-immune-systems evolution ids immune model network by tomhebbron on 2009-08-02 15:55:55 as along with 1 person VGreiff
	Reliability of regulatory networks and its evolution [My Copy] Journal of Theoretical Biology, Vol. 258, No. 4. (21 June 2009), pp. 502-512. by Stefan Braunewell, Stefan Bornholdt posted to evolution model network nk reliability by tomhebbron on 2009-07-16 14:59:19 as along with 1 person VGreiff
	Towards a Model for an Immune System [My Copy] MICAI 2002: Advances in Artificial Intelligence (2002), pp. 159-172. by Rosa Saab, Raúl Monroy, Fernando Godínez posted to immune model by tomhebbron on 2009-07-16 14:05:33 as
	The unavoidable costs and unexpected benefits of parasitism: Population and metapopulation models of parasite-mediated competition [My Copy] Journal of Theoretical Biology, Vol. 250, No. 2. (21 January 2008), pp. 244-256. by Chih-Horng Kuo, Vanessa Corby-Harris, Daniel E. L. Promislow posted to evolutionary-stable-strategy immune model parasitism strategy by tomhebbron on 2009-07-13 12:58:10 as
	Multi-level selection and immune networks: preliminary discussion of an abstract model [My Copy] In ICAL 2003: Proceedings of the eighth international conference on Artificial life (2003), pp. 223-226. by Tom Lenaerts, Anne Defaweux, Piet van Remortel, Joke Reumers, Bernard Manderick posted to model network immune by tomhebbron on 2009-05-27 13:33:37 as
	Model systems in developmental biology [My Copy] BioEssays, Vol. 17, No. 5. (1995), pp. 451-455. by Jessica A. Bolker posted to developmental-biology model by tomhebbron on 2009-05-27 12:38:30 as along with 1 person dougbruce
	Measures of evolvability in Tierra [My Copy] Artificial Life and Robotics, Vol. 5, No. 4. (16 December 2001), pp. 211-214. by Thomas Ray, Chenmei Xu posted to tierra model evolvability complexity biomol-project by tomhebbron on 2009-04-09 15:57:18 as
	Invasion sequence affects predator-prey dynamics in a multi-species interaction [My Copy] Nature, Vol. 405, No. 6785. (25 May 2000), pp. 448-450. by Steven M. Sait, Wei-Chung Liu, David J. Thompson, Godfray, Michael Begon posted to coevolution ecology model predatorprey by tomhebbron on 2009-04-07 15:44:24 as
	From Molecules to Ecosystems through Dynamic Energy Budget Models [My Copy] The Journal of Animal Ecology, Vol. 69, No. 6. (2000), pp. 913-926. by R. M. Nisbet, E. B. Muller, K. Lika, S. A. L. M. Kooijman posted to deb metabolism model by tomhebbron on 2009-04-07 11:29:55 as
	Simulation of coevolution in community by using the "Evolutionary Constructor" program. [My Copy] In silico biology, Vol. 7, No. 3. (2007), pp. 261-275. by S. A. Lashin, V. V. Suslov, N. A. Kolchanov, Y. G. Matushkin posted to coevolution community model simulation trophism by tomhebbron on 2009-04-06 23:07:12 as
	Computer Simulation of Protocells [My Copy] Computational Methods in Systems Biology In Lecture Notes in Computer Science, Vol. 2602 (2003), pp. 194-197. by Doron Lancet edited by Corrado Priami posted to model protocell complexity by tomhebbron on 2009-04-05 18:46:27 as
	Self-maintenance and self-reproduction in an abstract cell model. [My Copy] Journal of theoretical biology, Vol. 206, No. 2. (21 September 2000), pp. 243-253. by N. Ono, T. Ikegami posted to cell model by tomhebbron on 2009-04-02 15:18:54 as
	Stochastic Simulation of the Chemoton. [My Copy] Artificial life (14 January 2009) by Sven Van Segbroeck, Ann Nowé, Tom Lenaerts posted to cell chemoton model simulation by tomhebbron on 2009-04-02 15:09:03 as
	A minimal and self-consistent in silico cell model based on macromolecular interactions [My Copy] Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 362, No. 1486. (29 October 2007), pp. 1831-1839. by Christoph Flamm, Lukas Endler, Stefan Müller, Stefanie Widder, Peter Schuster posted to cell minimal model by tomhebbron on 2009-04-02 12:27:49 as along with 1 person mjoach
	Protocell self-reproduction in a spatially extended metabolism-vesicle system. [My Copy] J Theor Biol, Vol. 245, No. 3. (7 April 2007), pp. 400-410. by J. Macía, R. V. Solé posted to membrane metabolism model protocell by tomhebbron on 2009-04-02 10:15:06 as along with 1 person Doug
	Digital Organisms [My Copy] by Thomas S. Ray posted to alife model tierra by tomhebbron on 2009-03-30 04:48:53 as
	Construction of predictive promoter models on the example of antibacterial response of human epithelial cells [My Copy] Theoretical Biology and Medical Modelling, Vol. 2, No. 1. (2005), 2. by Ekaterina Shelest, Edgar Wingender posted to immune model predictive by tomhebbron on 2009-03-27 19:05:40 as
	Simulating the evolution of neutrally evolving sequences in a population under environmental changes [My Copy] Ecological Modelling, Vol. 176, No. 1-2. (August 2004), pp. 99-107. by S. Semovski posted to evolution model by tomhebbron on 2009-03-23 10:28:35 as

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immune	340
evolution	247
msc-thesis	141
complexity	68
network	67
artificial-immune-systems	61
model	58
fitness-landscape	54
nk	52
adaptive_immune_system	42
topology	42
modelling	34
biomol-project	32
ecology	32
review	31
mit-evolution-of-the-immune-system	30
danger-theory	27
history	27
theory	24
coevolution	23
pathogen	23
genome	22
assortativity	20
metabolism	18
proteome	18
self	18
sense-reading-group	18
csi-report	16
innate	16
predation	16
cell	15
major-transitions	15
mhc	15
somatic-hypermutation	15
bacteria	14
alife	13
microbial	13
origins	13
virus	13
economics	12
innate-immune	12
developmental-genome	11
genetic-algorithm	11
motif	11
origin	11
science	11
emergence	10
immunology	10
philosophy	10
protein	10
strategy	10
tlr	10
parasitism	9
horizontal-gene-transfer	8
individuality	8
lock-in	8
systems-biology	8
tcell	8
tolerance	8
artificial-chemistry	7
autopoiesis	7
baldwin	7
food-web	7
modularity	7
predatorprey	7
predictive	7
scale-free	7
simulation	7
tierra	7
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agents	6
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autoimmune	6
business	6
chemistry	6
complement	6
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genome-size-limit	6
ids	6
phagocytosis	6
phenotype-plasticity	6
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biology	5
cancer	5
city	5
colonial	5
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ig	5
invertebrates	5
java	5
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power-law	5
rag	5
analysis	4
applications	4
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cooperation	4
danger-signal	4
database	4
dynamics	4
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gp	4
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homunculus	4
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interactome	4
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landscape	4
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membrane	4
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ppi	4
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cost	3
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folding	3
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gnathostomes	3
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idiotypic	3
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insect	3
levins	3
metazoa	3
multicellular	3
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optimisation	3
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prokaryote	3
recognition	3
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sex	3
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toxin	3
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damp	2
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development	2
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ethology	2
eukaryotic	2
evasion	2
feedback	2
genetics	2
graphlet	2
gut	2
heterogeneity	2
histocompatibility	2
homology	2
horizontal_gene_transfer	2
host-parasite	2
immune-big-bang	2
immune-privilege	2
immunity	2
life	2
metabolic	2
microbial_communities	2
microbiology	2
mine	2
mitochondia	2
moonlighting	2
ontogeny	2
optimal_defense	2
organisation	2
pamp	2
pattern-recognition	2
phylogenetic	2
plant	2
plants	2
prng	2
quorum	2
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robotics	2
signalling	2
simulation_model	2
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sudoku	2
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aging	1
ai	1
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ants	1
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automation	1
avida	1
behavioural-manipulation	1
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bioengineering	1
biofilm	1
biological_network	1
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blood	1
cache	1
case_study	1
cell_communication	1
chaotic	1
chemoton	1
chimerism	1
classification	1
clonal-selection	1
cluster	1
clustering	1
colour	1
community	1
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complex	1
computational	1
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costimulation	1
cost-of-resistance	1
criteria	1
cuda	1
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damage	1
data	1
deb	1
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defence_mechanism	1
degeneracy	1
developmental-biology	1
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drug-resistance	1
economic	1
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energy	1
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evolutionary-dynamics	1
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evolutionary-theory	1
exaptations	1
file-import-08-08-18	1
file-import-09-08-20	1
final-inch	1
flu	1
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gaia	1
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good_practice	1
graft	1
graph-theory	1
grid_computing	1
h5n1	1
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hci	1
hedging	1
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hyppo	1
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immune_bouncer	1
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immune-engineering	1
immuno-engineering	1
immunoglobulin	1
immunoprivilege	1
imune	1
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induction	1
inference	1
informatics	1
innate_immune_system	1
insects	1
integrity	1
intrusion-detection-systems	1
jawless_vertebrates	1
junk_dna	1
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laughter	1
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meme	1
memory	1
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micro-organisms	1
mind	1
minimal	1
mirror-neurons	1
mitochondria	1
mode	1
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multicellularity	1
mutation_rate	1
mutations	1
natural-killer	1
natural-language	1
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necrotic	1
negative-selection	1
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networks	1
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niche	1
nkc	1
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nutrients	1
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ode	1
omes	1
omics	1
open-source	1
order	1
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predator_prey	1
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publication	1
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r	1
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reliability	1
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seahorse	1
search	1
self-damage	1
self-nonself	1
self_organisation	1
self_reference	1
sentinel	1
situated	1
sleep	1
social_network	1
spandrels	1
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stability	1
stdp	1
stem_cell	1
stocks	1
stress_proteins	1
subvert	1
tcr	1
technological_network	1
toad	1
transplant	1
transplantation	1
trichromatic	1
two-signal	1
uav	1
ultimatum	1
unicellular	1
vaccination	1
vaccine_discovery	1
variable-lymphocyte-receptor	1
vdj	1
venom	1
vertebrate	1
vision	1
walled-city	1
warfare	1
web	1
webscience	1
weismann-barrier	1
writing	1

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