tomhebbron's topology [42 articles] Export

Recent papers added to tomhebbron's library classified by the tag topology. You can also see everyone's topology.

	Parasites lead to evolution of robustness against gene loss in host signaling networks [My Copy] Molecular Systems Biology, Vol. 4 (15 July 2008) by Marcel Salathe, Orkun S. Soyer posted to virulence topology robustnes parasitism network immune evolution damage by tomhebbron on 2009-10-22 16:15:43 as along with 6 people beete grahamc zwang jjray renatomilani Retchless
	Assortative mixing by degree makes a network more unstable [My Copy] (29 Jul 2005) by Markus Brede, Sitabhra Sinha posted to topology theory network assortativity by tomhebbron on 2009-10-21 11:32:32 as along with 2 people and 2 groups nettraq korakot Philosophy_of_Information Blog_and_Wiki_Research
	Assortative Mixing in Networks [My Copy] Physical Review Letters, Vol. 89, No. 20. (28 Oct 2002), 208701. by M. E. J. Newman posted to topology technological_network social_network network motif data biological_network assortativity by tomhebbron on 2009-10-21 11:29:55 as along with 11 people andreacapocci ganden s25060331s kubyaddi Kovanen muraken jmenche ChaTo nolodie chibatching ddahlem
	Finding community structure in networks using the eigenvectors of matrices [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 74, No. 3. (2006), 036104. by M. E. J. Newman posted to topology network motif modularity algorithm by tomhebbron on 2009-10-21 11:28:20 as along with 9 people and 1 group AaronMcDaid lawraga studentx vtraag muraken cgaugain bigbossman hannu Diego_Prada ThinkTank
	Small World Patterns in Food Webs [My Copy] Journal of Theoretical Biology, Vol. 214, No. 3. (07 February 2002), pp. 405-412. by Jose M. Montoya, Ricard V. Solé posted to topology small-world power-law network food-web ecology by tomhebbron on 2009-10-21 11:24:52 as along with 2 people muraken mague
	The Structure and Function of Complex Networks [My Copy] SIAM Review, Vol. 45, No. 2. (2003), pp. 167-256. by M. E. J. Newman posted to topology network complexity by tomhebbron on 2009-10-21 10:35:35 as along with 37 people and 4 groups Sergey_gerbek halukbingol jsaramak jotwin LaurentHD vmarceau qqwert mrkn ocs brihea chibatching davidecellai diamantis panisson spool deanmalmgren pcarbo matteodellamico eyliu afragop merazzle muraken lshaw jaspervoskuilen timflutre gcalda gi0rgi0ne rcrane shikin nolodie stefanoallesina eustatic skumagai ilkert rrbarb ebalp Borelli complex networks Soslab Complex_Real_Networks EntrepreneurialRisks
	Gene networks and liar paradoxes [My Copy] BioEssays, Vol. 31, No. 10. (31 August 2009), pp. 1110-1115. by Mark Isalan posted to topology motif logic liar_paradox genome gene_regulatory_networks feedback by tomhebbron on 2009-10-20 09:51:39 as along with 1 person VGreiff
	Are essential genes really essential? [My Copy] Trends in Microbiology, Vol. 17, No. 10. (16 October 2009), pp. 433-438. by Michael A. D’Elia, Mark P. Pereira, Eric D. Brown posted to topology network genome evolution by tomhebbron on 2009-10-20 09:37:48 as along with 1 person VGreiff
	The large-scale organization of metabolic networks [My Copy] Nature, Vol. 407, No. 6804. (05 October 2000), pp. 651-654. by H. Jeong, B. Tombor, R. Albert, Z. N. Oltvai, A. L. Barabasi posted to topology scale-free network metabolism by tomhebbron on 2009-10-04 22:57:14 as along with 30 people and 3 groups jmenche asadrahman sergiun dlobo schwartzjmc muraken kentz camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga karfunkel Evangelia shung pmendes stefanoallesina shikin dylanwalker GEB dbk-lab kdl
	Linked: How Everything Is Connected to Everything Else and What It Means [My Copy] (29 April 2003) by Albert-Laszlo Barabasi posted to topology scale-free power-law network csi-report by tomhebbron on 2009-10-01 13:06:42 as along with 100 people and 34 groups ulmer kinop borkurdotnet scottmoody davidleitner simdoc makrehchi fierykylin boosda mxro thegoose rickl MariaChiaraP pdlug nazimkeven eddymier mboehmer ajaymalik pacianca3 donade einatb gastarblogger fbr maike emre panisson Adso gkoenig mattjb mooniii pick600 germoglio hrwiltse laurobeltrao nigini camster draggin korakot Mandre A_Olympia zephoria RyanSchultz fmatthes scholz barry cyprien riadlem lehel zinp nkorf tautai wcrosbie cchesher cmmorel jekky Typewriter mbliemel Jenneke cgjj slariccia irinas petzlux marije seawidget hannont matteodellamico leonardo bibliothecaire bigbossman krisl spirit_of_numenor cristinaalp brusilovsky jwdietrich britton cerkut awooga mzygmunt azygmunt RafG jaspervoskuilen kevinemamy timflutre alexevasion flavian_vasile mattlandau PaulBHartzog roland_ewald jenna anansi sidds1601 rkalvi JimFolk asrilova anton-tayanovskyy aelzaim copyculture kamccollum kikimu thecolourblue Information Integration Architecture CMU-HCII Philosophy_of_Information dbk-lab Blog_and_Wiki_Research automatic_summarization structural_bioinformatics CSCW MathBio ASR digital_youth Sociology Librarians Semantic-Social-Networks Wikipedia CoP_CMS Bioinformatics folksonomy ETEC533 CMS Cybernetics social_navigation ComplexAdaptiveSystems Biomedical_Cybernetics AGH-IISG Adaptive-Web dIEMoSIRIS MoSi-Rostock AQUA-FONTIS-Study MASSS CSU_School_of_Education Web2-0_Education Social Web ICT4D
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted to yeast topology proteome network modularity by tomhebbron on 2009-10-01 13:05:14 as along with 31 people and 10 groups aceol ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
	The implications of human metabolic network topology for disease comorbidity [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (3 July 2008), pp. 9880-9885. by D. Lee, J. Park, K. A. Kay, N. A. Christakis, Z. N. Oltvai, A. Barabasi posted to topology network metabolism disease by tomhebbron on 2009-10-01 12:47:51 as along with 6 people mingzhi sergiun klaatujohn ptrobajo guhjy Borelli
	The small world inside large metabolic networks. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 268, No. 1478. (7 September 2001), pp. 1803-1810. by A. Wagner, D. A. Fell posted to topology small-world power-law network metabolism evolution by tomhebbron on 2009-10-01 10:36:43 as along with 9 people and 1 group eehsanipour schwartzjmc diamantis mague yoh Evangelia athleem pmendes mdstobbe JJJ
	Evolutionary design principles of modules that control cellular differentiation: consequences for hysteresis and multistationarity [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1516-1522. by Junil Kim, Tae-Geon Kim, Sung H. Jung, et al.Jeong-Rae Kim, Taesung Park, Pat Heslop-Harrison, Kwang-Hyun Cho posted to topology network hysteresis gene_regulatory_networks cell by tomhebbron on 2009-09-15 16:23:12 as along with 2 people and 1 group dlobo jjray GEB
	Copying and Evolution of Neuronal Topology [My Copy] PloS one, Vol. 3, No. 11. (20 November 2008), e3775. by Chrisantha Fernando, K. K. Karishma, Eörs Szathmáry edited by Aldo Rustichini posted to topology stdp neuro network motif error_correction by tomhebbron on 2009-09-14 17:05:33 as along with 3 people amorgan77 adebuitleir fbaroni
	Metabolic network discovery through reverse engineering of metabolome data [My Copy] Metabolomics, Vol. 5, No. 3. (1 September 2009), pp. 318-329. by Tunahan Çakır, Margriet Hendriks, Johan Westerhuis, Age Smilde posted to topology systems_biology network metabolism by tomhebbron on 2009-09-08 16:50:50 as
	A natural class of robust networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 15. (22 July 2003), pp. 8710-8714. by Maximino Aldana, Philippe Cluzel posted to topology scale-free robustness nk network evolution dynamics analysis by tomhebbron on 2009-09-07 12:57:48 as along with 6 people and 5 groups dlobo kinop jmenche eldan jwdietrich timflutre GEB MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
	Bacterial Quorum-Sensing Network Architectures. [My Copy] Annual review of genetics (17 August 2009) by Wai-Leung L. Ng, Bonnie L. Bassler posted to topology self quorum network multicellular cell_communication bacteria by tomhebbron on 2009-09-07 11:17:49 as along with 1 person Winzer
	Emergence of Scaling in Random Networks [My Copy] Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512. by Albert-László Barabási, Réka Albert posted to network scale-free topology by tomhebbron on 2009-06-22 16:18:28 as along with 51 people asangansi tonyony tessonec leonglester aniakovas nlimam acrmartins bivas makukha melo_mcr thepogoman vmarceau mfuhr eitanla1 voiklis jb44 kinop panisson anphony Adso mattjb phoenixzxl sWorgan czeller alanyang kaarsinogen diamantis pgastrein nolodie qwermish dragonrez shivaram tolosoft balicea ddahlem merazzle Borelli muraken lshaw gurkanbebek jaspervoskuilen rcrane ransombriggs idreams2 nkishan justforscraps Evangelia kb Diego_Prada subhacom ethkim
	Natural Selection and the Concept of a Protein Space [My Copy] Nature, Vol. 225, No. 5232. (7 February 1970), pp. 563-564. by John Maynard Smith posted to evolution network protein topology by tomhebbron on 2009-06-15 16:11:38 as along with 1 person VGreiff
	Evolution of Metabolisms: A New Method for the Comparison of Metabolic Pathways Using Genomics Information [My Copy] Journal of Computational Biology, Vol. 6, No. 3-4. (1999), pp. 343-360. by Christian V. Forst, Klaus Schulten posted to bioinformatics genome metabolism topology by tomhebbron on 2009-04-09 15:58:38 as
	Understanding elementary landscapes [My Copy] In GECCO '08: Proceedings of the 10th annual conference on Genetic and evolutionary computation (2008), pp. 585-592. by Darrell Whitley, Andrew M. Sutton, Adele E. Howe posted to fitness-landscapes topology by tomhebbron on 2009-04-04 19:03:28 as
	A framework for web science [My Copy] Found. Trends Web Sci., Vol. 1, No. 1. (January 2006), pp. 1-130. by Tim Berners-Lee, Wendy Hall, James A. Hendler, Kieron O'Hara, Nigel Shadbolt, Daniel J. Weitzner posted to webscience topology by tomhebbron on 2009-03-29 19:08:00 as along with 12 people and 1 group ekrsulov nlong Huadong silberbauer jago gioia jlb08r dartar diogomartins Scis0000002 paulovn rrbarb Adaptive-Web
	Modularity and community structure in networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 23. (6 June 2006), pp. 8577-8582. by M. E. J. Newman posted to modularity network topology by tomhebbron on 2009-03-09 15:36:50 as along with 34 people and 4 groups Sergey_gerbek RayRa houniao007 gagliol spool jago thegoose tnhh daforerog pdlug senseable-urb dakelley rsantana orahcio vtraag dartar aqeel ChaTo jfr yas balicea ddahlem cmm fukken kubyaddi adriandefroment gcalda hannu marcio phreeza Diego_Prada carlk ellakat jjray complex networks T_lab FAB-lab ThinkTank
	Specificity and stability in topology of protein networks. [My Copy] Science (New York, N.Y.), Vol. 296, No. 5569. (3 May 2002), pp. 910-913. by Sergei Maslov, Kim Sneppen posted to proteome topology assortativity by tomhebbron on 2009-01-20 18:05:07 as along with 13 people and 1 group nzm jmenche ocs phoenixzxl davidecellai muraken camster timflutre gcalda grahamc iris_2001 wjh122122 dylanwalker dbk-lab
	Topological transition features and synchronizability of a weighted hybrid preferential network [My Copy] Physica A: Statistical and Theoretical Physics, Vol. 371, No. 2. (15 November 2006), pp. 841-850. by X. Lu, X. Wang, J. Fang posted to clustering network topology by tomhebbron on 2009-01-06 01:16:50 as
	The yeast cell-cycle network is robustly designed [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 14. (6 April 2004), pp. 4781-4786. by Fangting Li, Tao Long, Ying Lu, Qi Ouyang, Chao Tang posted to yeast proteome topology by tomhebbron on 2008-11-28 12:34:35 as along with 9 people karthikraman amozeika Dangerfc ajitkumar22 behindtherabbit jmenche eldan timflutre jiny
	Modeling interactome: scale-free or geometric? [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3508-3515. by N. Przulj, D. G. Corneil, I. Jurisica posted to topology interactome by tomhebbron on 2008-11-12 10:55:48 as along with 7 people and 1 group abhishek_tiwari lfriedl wnpx j3xucite gurkanbebek maralena ethkim kdl
	Modeling protein network evolution under genome duplication and domain shuffling. [My Copy] BMC systems biology, Vol. 1 (2007) by K. Evlampiev, H. Isambert posted to evolution network ppi topology by tomhebbron on 2008-10-29 14:12:13 as along with 2 people saket carlk
	Approximating clustering coefficient and transitivity [My Copy] Journal of Graph Algorithms and Applications, Vol. 9 (2005) by Thomas Schank, Dorothea Wagner posted to network topology assortativity by tomhebbron on 2008-10-28 17:03:21 as along with 1 person muraken
	Generating random networks with given degree-degree correlations and degree-dependent clustering [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 77, No. 1. (2008) by Andreas Pusch, Sebastian Weber, Markus Porto posted to complex network networks processes random topology by tomhebbron on 2008-09-19 19:09:23 as
	Exploring complex networks [My Copy] Nature, Vol. 410, No. 6825. (08 March 2001), pp. 268-276. by S. H. Strogatz posted to network topology by tomhebbron on 2008-09-02 00:15:00 as along with 52 people and 11 groups Katieleonard danilov jaspervoskuilen Sergey_gerbek leonglester makrehchi makukha vmarceau ganden conservatism donade nolodie nedwards MehdiMoussaid cswinburne lpfernandes jmenche camster sourada korakot A_Olympia KAllendoerfer mague shelleylyn ldietz Borelli cmmorel balicea rp311 wnpx matteodellamico ddahlem cmm float adexie scis0000001 merazzle muraken azygmunt qingyunlb timflutre rsantana cjeans fbaroni suizan karfunkel Evangelia e1000ian sala livingthingdan skumagai ebalp complex networks Network Analysis of Genes Regulated in Renal Diseases Philosophy_of_Information dbk-lab Blog_and_Wiki_Research automatic_summarization NLP FAB-lab AGH-IISG dorm624 8_01
	Collective dynamics of \|[lsquo]\|small-world\|[rsquo]\| networks [My Copy] Nature, Vol. 393, No. 6684. (04 June 1998), pp. 440-442. by D. J. Watts, S. H. Strogatz posted to network topology by tomhebbron on 2008-08-21 02:16:43 as along with 111 people and 14 groups andreassorge Sergey_gerbek tonyony vgauthier halukbingol rrbarb dannya222 jsaramak christianholz kentz ptony82 TomHubbard fastjoe23 soramame_0518 jaia normaali leonglester makrehchi makukha fierykylin briordan vtraag dexter_shen AJCann jobadge thegoose2 tomasha apeyrache acrmartins sergiun Kovanen orahcio theus Adso mattjb dpf kaarsinogen cswinburne jmenche chrisdubois tharris MehdiMoussaid jobriath camster G_RAM kewms KAllendoerfer AdrianMiles mague alexisgallagher zqshen shivaram cmmorel Shirakawa tolosoft nithya nygaard balicea dumpa matteodellamico yoh dullhunk voiklis eldaly ianturton merazzle maqbes muraken zono zeroknowledge choonpeng cerkut xinian mmartin king amac adriandefroment RafG radale jaspervoskuilen timflutre pbrandao sugaya ruvido rsantana cjeans fbaroni michaelmampaey rcrane ransombriggs suizan lpfernandes sbianco kb kaks stefanoallesina beete ladamic iris_2001 livingthingdan jsanpedro jotwin ulmer takeha-e dylanwalker mpotamias jpbarrette Borelli jago ddahlem ilkert eLearning in Leicester Network Data Repository C. elegans / WormBase dbk-lab GraphVis Semantic-Social-Networks microRNA Web2 Soslab CooperationStudies ColDyn contact-id ADMiRes 8_01
	NKalpha: Non-uniform epistatic interactions in an extended NK model [My Copy] In Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (2008), pp. 234-241. by Tom Hebbron, Seth Bullock, Dave Cliff posted to nk topology by tomhebbron on 2008-06-16 19:23:09 as
	Mapping Human Whole-Brain Structural Networks with Diffusion MRI [My Copy] PLoS ONE, Vol. 2, No. 7. (2007), e597. by P. Hagmann, M. Kurant, X. Gigandet, et al.P. Thiran, V. J. Wedeen, R. Meuli, J. P. Thiran posted to brain network topology by tomhebbron on 2008-05-22 16:10:49 as along with 2 people and 1 group yonghe birdyyo Complex_Brain_Networks
	Modeling network growth with assortative mixing [My Copy] The European Physical Journal B - Condensed Matter and Complex Systems, Vol. 50, No. 4. (18 April 2006), pp. 617-630. by A. P. Quayle, A. S. Siddiqui, Jones posted to topology assortativity by tomhebbron on 2008-05-15 18:04:42 as
	Inferring Network Mechanisms: The Drosophila melanogaster Protein Interaction Network [My Copy] (15 August 2004) by Manuel Middendorf, Etay Ziv, Chris Wiggins posted to nk topology assortativity by tomhebbron on 2008-05-12 14:40:10 as along with 2 people and 1 group camster iris_2001 dbk-lab
	Structural properties of scale free networks [My Copy] (2002) by R. Cohen, D. Avraham, S. Havlin posted to network scale-free topology by tomhebbron on 2008-03-14 15:19:59 as along with 3 people Nichtich fuzzy7761 rchauhan
	Revealing static and dynamic modular architecture of the eukaryotic protein interaction network [My Copy] Mol Syst Biol, Vol. 3 (24 April 2007) by Kakajan Komurov, Michael White posted to network proteome topology by tomhebbron on 2008-03-14 15:18:22 as along with 8 people Borelli massivemayhem nicoleq zwang mingzhi phoenixzxl ellakat carlk
	Molecular basis for evolving modularity in the yeast protein interaction network. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e226. by Ariel Fernández posted to yeast topology nk assortativity by tomhebbron on 2008-03-12 00:15:36 as along with 6 people saket pradiptaray zwang niallhaslam Ema phoenixzxl
	Scale-free networks in biology: new insights into the fundamentals of evolution? [My Copy] Bioessays, Vol. 24, No. 2. (2002), pp. 105-9. by Y. I. Wolf, G. Karev, E. V. Koonin posted to msc-thesis network scale-free topology by tomhebbron on 2007-10-10 23:34:51 as
	Boolean dynamics of networks with scale-free topology [My Copy] Physica D, Vol. 185, No. 1. (2003), pp. 45-66. by M. Aldana posted to msc-thesis topology by tomhebbron on 2007-10-10 23:34:51 as

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flu	1
forex	1
for:jasonn	1
fpga	1
gaia	1
generalized	1
genome-duplication	1
genome-editing	1
good_practice	1
graft	1
graph-theory	1
grid_computing	1
h5n1	1
haha	1
hci	1
hedging	1
heterotrophy	1
hierarchy	1
history_of_life	1
hyppo	1
hysteresis	1
immune_bouncer	1
immune-cost	1
immune-engineering	1
immuno-engineering	1
immunoglobulin	1
immunoprivilege	1
imune	1
individuation	1
induction	1
inference	1
informatics	1
innate_immune_system	1
insects	1
integrity	1
intrusion-detection-systems	1
jawless_vertebrates	1
junk_dna	1
kernels	1
lambda-calculus	1
lamprey	1
larvae	1
last_common_ancestor	1
laughter	1
liar_paradox	1
lock_in	1
logic	1
machine-learning	1
marine	1
mechanism	1
meme	1
memory	1
meta-gp	1
microbe	1
microbes	1
microbial_community	1
micro-organisms	1
mind	1
minimal	1
mirror-neurons	1
mitochondria	1
mode	1
molecular	1
monoclonal-antibodies	1
multicellularity	1
mutation_rate	1
mutations	1
natural-killer	1
natural-language	1
natural_selection	1
necrotic	1
negative-selection	1
network-generation	1
networks	1
neuroimmune_interactions	1
niche	1
nkc	1
nk_cell	1
nutrients	1
obligate	1
ode	1
omes	1
omics	1
open-source	1
order	1
organic_chemistry	1
organisations	1
parasitsm	1
pathogens	1
personality	1
pervasive-computing	1
phages	1
phenotypic	1
philosophy-of-science	1
physiology	1
prebiotic	1
predator_prey	1
presentation	1
primates	1
primordial-life	1
prion	1
processes	1
profiling	1
promethean	1
promiscuity	1
proteins	1
publication	1
quorum-sensing	1
r	1
random	1
random-graph	1
redundancy	1
rejection	1
reliability	1
resistance	1
reverse_engineering	1
robustnes	1
runtime-reconfigurable	1
seahorse	1
search	1
self-damage	1
self-nonself	1
self_organisation	1
self_reference	1
sentinel	1
situated	1
sleep	1
social_network	1
spandrels	1
specialisation	1
speciation	1
stability	1
stdp	1
stem_cell	1
stocks	1
stress_proteins	1
subvert	1
tcr	1
technological_network	1
toad	1
transplant	1
transplantation	1
trichromatic	1
two-signal	1
uav	1
ultimatum	1
unicellular	1
vaccination	1
vaccine_discovery	1
variable-lymphocyte-receptor	1
vdj	1
venom	1
vertebrate	1
vision	1
walled-city	1
warfare	1
web	1
webscience	1
weismann-barrier	1
writing	1

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