tomjad's library 34 articles Export

	Invocation of operations from script-based Grid applications [My Copy] Future Generation Computer Systems (27 May 2009) by Maciej Malawski, Tomasz Bartyński, Marian Bubak posted to goi by tomjad on 2009-09-08 12:17:13 as along with 1 person dullhunk
	Virtual Laboratory Engine – GridSpace Engine [My Copy] Proceedings of Cracow Grid Workshop - CGW'07 In Proceedings of Cracow Grid Workshop - CGW'07 (October 2007), pp. 53-58. by Eryk Ciepiela, Joanna Kocot, Tomasz Gubala, Maciej Malawski, Marek Kasztelnik, Marian Bubak edited by Marian Bubak, Michal Turala, Kazimierz Wiatr posted to gsengine by tomjad on 2009-09-08 10:16:19 as along with 1 person Nuanda
	Developer and User Interfaces to the Virolab Virtual Laboratory [My Copy] Proceedings of Cracow Grid Workshop - CGW'07 In Proceedings of Cracow Grid Workshop - CGW'07 (October 2007), pp. 47-52. by W. Funika, D. Harezlak, D. Krol, P. Pegiel, M. Bubak edited by Marian Bubak, Michal Turala, Kazimierz Wiatr posted to epe by tomjad on 2009-09-08 10:12:20 as along with 1 person Nuanda
	Virtual Laboratory for Development and Execution of Biomedical Collaborative Applications [My Copy] Computer-Based Medical Systems, 2008. CBMS '08. 21st IEEE International Symposium on In Computer-Based Medical Systems, 2008. CBMS '08. 21st IEEE International Symposium on (2008), pp. 373-378. by M. Bubak, T. Gubala, M. Malawski, et al.B. Balis, W. Funika, T. Bartynski, E. Ciepiela, D. Harezlak, M. Kasztelnik, J. Kocot, D. Krol, P. Nowakowski, M. Pelczar, J. Wach, M. Assel, A. Tirado-Ramos posted to virtual_laboratory by tomjad on 2009-09-08 09:53:36 as along with 1 person Nuanda
	Entrez: molecular biology database and retrieval system. [My Copy] Methods in enzymology, Vol. 266 (1996), pp. 141-162. by G. D. Schuler, J. A. Epstein, H. Ohkawa, J. A. Kans posted to entrez by tomjad on 2009-09-08 08:25:46 as along with 1 person idoerg
	Jalview Version 2--a multiple sequence alignment editor and analysis workbench [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1189-1191. by Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Michele Clamp, Geoffrey J. Barton posted to jalview by tomjad on 2009-08-29 23:19:19 as along with 7 people calderonv dimka Thaverkamp jamselem timflutre nuin jmeppley
	The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications. [My Copy] BMC bioinformatics, Vol. 6 (2005) by J. L. Moreland, A. Gramada, O. V. Buzko, Q. Zhang, P. E. Bourne posted to proteinworkshop by tomjad on 2009-08-29 22:38:34 as along with 1 person daforerog
	The PredictProtein server. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3300-3304. by B. Rost, J. Liu posted to predictprotein by tomjad on 2009-08-26 11:58:30 as
	CASTp: Computed Atlas of Surface Topography of proteins [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3352-3355. by Andrew T. Binkowski, Shapor Naghibzadeh, Jie Liang posted to castp by tomjad on 2009-08-17 00:32:53 as along with 1 person MarcoAlvarez
	The SuMo server: 3D search for protein functional sites [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3929-3930. by Martin Jambon, Olivier Andrieu, Christophe Combet, Gilbert Deleage, Francois Delfaud, Christophe Geourjon posted to sumo by tomjad on 2009-08-16 22:58:46 as along with 1 person topsan
	LIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins [My Copy] Journal of Molecular Graphics and Modelling, Vol. 15, No. 6. (December 1997), pp. 359-363. by Manfred Hendlich, Friedrich Rippmann, Gerhard Barnickel posted to ligsite_csc by tomjad on 2009-08-16 22:47:39 as along with 2 people trmr massivemayhem
	Fast prediction and visualization of protein binding pockets with PASS [My Copy] J Comput Aided Mol Des, Vol. 14, No. 4. (May 2000), pp. 383-401. by G. P. Brady, P. F. Stouten posted to pass by tomjad on 2009-08-16 22:46:03 as along with 2 people tjimenez nickolay
	Prediction of Functional Sites Based on the Fuzzy Oil Drop Model [My Copy] PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e94. by Michał Bryliński, Katarzyna Prymula, Wiktor Jurkowski, et al.Marek Kochańczyk, Ewa Stawowczyk, Leszek Konieczny, Irena Roterman posted to fod by tomjad on 2009-08-16 22:45:06 as along with 3 people and 1 group iaolier Einat zwang structural_bioinformatics
	Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1908-1916. by Alasdair T. Laurie, Richard M. Jackson posted to qsite by tomjad on 2009-08-16 21:55:25 as along with 3 people ramiro2k sriram_s nickolay
	DaliLite workbench for protein structure comparison. [My Copy] Bioinformatics (Oxford, England), Vol. 16, No. 6. (1 June 2000), pp. 566-567. by L. Holm, J. Park posted to dali by tomjad on 2009-08-16 12:49:49 as along with 4 people jwm semin rabio sim82
	A method for simultaneous alignment of multiple protein structures. [My Copy] Proteins, Vol. 56, No. 1. (1 July 2004), pp. 143-156. by M. Shatsky, R. Nussinov, H. J. Wolfson posted to multiprot by tomjad on 2009-08-16 12:11:42 as along with 5 people nachtalp analogAI j3xucite carlescorbi kgutwin
	MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621. by Angel R. Ortiz, Charlie E. Strauss, Osvaldo Olmea posted to mammoth by tomjad on 2009-08-16 07:46:45 as along with 8 people and 2 groups awarlau ana iakes dimka jwm analogAI sebk tjimenez structural_bioinformatics Bioinformatics
	A new progressive-iterative algorithm for multiple structure alignment. [My Copy] Bioinformatics (7 June 2005) by Dmitry Lupyan, Alejandra Leo-Macias, Angel R R. Ortiz posted to mammoth by tomjad on 2009-08-16 07:45:54 as along with 5 people and 4 groups sebk ana dimka marcius tjimenez structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	T-Coffee: A novel method for fast and accurate multiple sequence alignment. [My Copy] Journal of molecular biology, Vol. 302, No. 1. (8 September 2000), pp. 205-217. by C. Notredame, D. G. Higgins, J. Heringa posted to t-coffee by tomjad on 2009-08-16 00:53:31 as along with 17 people and 1 group bratwurst viktor21614 robert laurabailey medic0747 BioNica sebk miguel dayjm indigoviolet ffranca treangen Haggan siebertm adijr marti newton1234 EisenLab
	MUSCLE: multiple sequence alignment with high accuracy and high throughput [My Copy] Nucl. Acids Res., Vol. 32, No. 5. (19 March 2004), pp. 1792-1797. by Robert C. Edgar posted to muscle by tomjad on 2009-08-16 00:52:53 as along with 29 people and 2 groups mgomes jeargle foxpowa esyoun natstreet dquest BioNica gjuggler edvin yylin treangen sebk agustinarce fhsantanna nachtalp bpb chrn jwm Haggan sanchezbuelna timflutre olympos martainn newton1234 skumagai bmaust sconlan dmp kcrawlik Radiation_Damage Stressosome
	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by Robert Edgar posted to muscle by tomjad on 2009-08-16 00:52:15 as along with 30 people and 5 groups tomatoe45 rneches gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal mgomes hryk BioNica natstreet Md_2007 sebk wallacei knaseanka chrn jwm balajis gbart caporaso sriram_s cdallett sanchezbuelna timflutre gisle urgi Ema LabDros References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp
	Clustal W and Clustal X version 2.0 [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948. by M. A. Larkin, G. Blackshields, N. P. Brown, et al.R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, D. G. Higgins posted to clustalw2 by tomjad on 2009-08-16 00:51:13 as along with 18 people l00cas vprieto Copper_Calcio TLVincent BioNica udivi Keksle hpm druvus treangen jwm cassj lisa1 ryanraaum bmaust alanrw mschofie marck
	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680. by J. D. Thompson, D. G. Higgins, T. J. Gibson posted to clustalw by tomjad on 2009-08-16 00:50:24 as along with 34 people and 1 group biomcgary vprieto oceanwind Blackbeard db344 udivi daforerog Md_2007 sebk cen4ik usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica timflutre adijr xingxu newton1234 Lombardo_7 biomedical-nlp
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted to rcsb by tomjad on 2009-08-16 00:30:01 as along with 45 people and 5 groups trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac tji higueruelo boris_aguilar sebk timg References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp beta
	Data Mining: Practical Machine Learning Tools and Techniques, Second Edition (Morgan Kaufmann Series in Data Management Systems) [My Copy] (22 June 2005) by Ian H. Witten, Eibe Frank posted to weka by tomjad on 2009-08-14 09:50:36 as along with 47 people and 6 groups anib singhsh installe malibu pinventado alexjfalcao fiacobelli liamtoh333 tijszwinkels ihaque sugarexpletive karinaecomp gstiglic haiyeong imrchen baaic RafaUsyd tmancill druvus dullhunk GJNauta sb-3000 sammydre balicea sdvillal caporaso AbnerCYH brunomelo dejang mdifranc BastianSpanneberg velasco azazello ezralanglois pprett gmonce fernandohbc scorreia_pro csacca jdu bobychan napvasconcelos soramame_0518 abellogin quianominorleo eegilbert akastrin mlkd WAND AI biomedical-nlp RiSE CSBBGraphTheory
	Bioinformatics and computational biology solutions using R and Bioconductor [My Copy] (31 August 2005) by Robert Gentleman posted to r_bioinformatics by tomjad on 2009-08-14 07:02:34 as along with 3 people jperkins lwaldron robfsouza
	Design patterns: elements of reusable object-oriented software [My Copy] (1995) by Erich Gamma, Richard Helm, Ralph Johnson, John Vlissides posted to designpatterns by tomjad on 2009-08-13 15:12:21 as along with 5 people michalpise knowlengr bringert saintedlama phbrownacmorg
	Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges [My Copy] Nat Rev Genet, Vol. 9, No. 9. (September 2008), pp. 678-688. by Lincoln D. Stein posted to infrastructure by tomjad on 2009-08-11 13:36:19 as along with 28 people and 4 groups lmichan artaban421 n00c PaoloRomano thegoose2 fisherp emayorga nuin rdiaz bmaust guhjy carolh12 ilya alaninmcr druvus srp33 dullhunk tharris stajich mrochman dansullivanblk neils jandot GustavoLacerda jago fgibson thomaskelder sjcockell Mycology Integrative Expertise for Global Health Convention on Knowledge Commons Poverty Alleviation from Access to Knowledge
	A new bioinformatic approach to detect common 3D sites in protein structures. [My Copy] Proteins, Vol. 52, No. 2. (1 August 2003), pp. 137-145. by M. Jambon, A. Imberty, G. Deléage, C. Geourjon posted to sumo by tomjad on 2009-08-06 17:54:37 as along with 1 person tjimenez
	LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation [My Copy] BMC Structural Biology, Vol. 6, No. 1. (24 September 2006), 19. by Bingding Huang, Michael Schroeder posted to ligsite_csc by tomjad on 2009-08-06 15:07:53 as along with 6 people superpyrin iaolier richardbickerton reyez tjimenez nickolay
	ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information. [My Copy] Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 163-164. by F. Glaser, T. Pupko, I. Paz, et al.R. E. Bell, D. Bechor-Shental, E. Martz, N. Ben-Tal posted to consurf by tomjad on 2009-08-06 10:47:52 as along with 4 people and 1 group oteri chrn bicko siebertm Structural Biology Group TorVergata
	ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by Meytal Landau, Itay Mayrose, Yossi Rosenberg, et al.Fabian Glaser, Eric Martz, Tal Pupko, Nir Ben-Tal posted to consurf by tomjad on 2009-08-06 10:41:46 as along with 8 people and 1 group pablocarb klexa shacko oteri ramiro2k chrn sriram_s bicko Structural Biology Group TorVergata
	CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W116-118. by Joe Dundas, Zheng Ouyang, Jeffery Tseng, Andrew Binkowski, Yaron Turpaz, Jie Liang posted to castp by tomjad on 2009-08-06 09:06:16 as
	Web Services at the European Bioinformatics Institute [My Copy] Nucl. Acids Res., Vol. 35, No. Web Server issue. (18 June 2007), gkm291. by Alberto Labarga, Franck Valentin, Mikael Anderson, Rodrigo Lopez posted to ebi_ws by tomjad on 2009-07-07 08:04:30 as along with 12 people jeargle druvus Cortel daforerog moborg dullhunk sujaikumar sgoetz niallhaslam sim82 alanrw tny

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