CiteULike: tomrevilla's algorithms [5 articles]

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articles	1514
competition	287
dynamics	230
model	215
population	160
resource	152
models	142
stability	134
food-webs	119
ecology	108
predator-prey	99
growth	96
community	89
coexistence	85
phytoplankton	85
spatial	84
theory	82
evolution	79
chemostat	73
chaos	69
size	68
species	67
lotka-volterra	64
temperature	61
biodiversity	58
individual-based	57
functional	56
allometry	54
predation	53
response	51
stoichiometry	50
structure	50
diversity	49
ecological	49
nutrient	48
plankton	48
scaling	48
foraging	46
ecosystem	45
selection	43
interactions	41
systems	41
diatoms	39
food-chains	39
life	39
adaptive	38
body	37
extinction	37
food	37
habitat	37
metabolic	37
dependence	36
dispersal	36
interaction	35
analysis	34
competitive	34
energy	34
trophic	34
mathematical	33
metapopulation	32
rate	32
complexity	31
density	31
metabolism	31
exclusion	30
time	29
control	28
global	28
history	27
optimal	27
resources	27
cycles	26
distribution	26
droop	26
heterogeneity	26
limitation	25
networks	25
equation	24
paradox	24
persistence	24
stable	24
uptake	24
bifurcation	23
environmental	23
evolutionary	23
niche	23
plant	23
communities	22
kinetics	22
microbial	22
monod	22
effect	21
simulation	21
stochastic	21
system	21
assembly	20
bacteria	20
effects	20
equations	20
invasion	20
light	20
behavior	19
biological	19
cell	19
enrichment	19
cellular	18
complex	18
continuous	18
cycle	18
dynamic	18
modeling	18
patterns	18
productivity	18
diffusion	17
equilibrium	17
function	17
limit	17
omnivory	17
patch	17
phosphorus	17
ratio	17
scale	17
the	17
automata	16
consumer	16
invasions	16
mass	16
mutualism	16
reproductive	16
strength	16
trade-offs	16
web	16
zooplankton	16
adaptation	15
cascade	15
culture	15
disturbance	15
lyapunov	15
matrix	15
alternative	14
conservation	14
ecosystems	14
fitness	14
fractal	14
game	14
multiple	14
noise	14
risk	14
self-organization	14
top-down	14
variable	14
algae	13
differential	13
dynamical	13
indirect	13
landscape	13
logistic	13
natural	13
nitrogen	13
pattern	13
photosynthesis	13
populations	13
production	13
space	13
spatially	13
states	13
temporal	13
consumer-resource	12
explicit	12
fluctuations	12
interference	12
modelling	12
network	12
neutral	12
oscillations	12
predator	12
regulation	12
bottom-up	11
chain	11
coevolution	11
feedback	11
fish	11
fragmentation	11
free	11
hiv	11
hypothesis	11
interspecific	11
nonlinear	11
plants	11
quality	11
strategies	11
strategy	11
succession	11
therapy	11
thermodynamics	11
viral	11
yield	11
connectance	10
consumption	10
daphnia	10
discrete	10
energetics	10
equivalence	10
herbivory	10
hopf	10
lattice	10
laws	10
life-history	10
metapopulations	10
michaelis-menten	10
mortality	10
nutrients	10
primary	10
principle	10
quota	10
richness	10
rule	10
series	10
soil	10
threshold	10
variation	10
vegetation	10
allometric	9
apparent	9
behaviour	9
capacity	9
carbon	9
change	9
effort	9
ideal	9
intraguild	9
limiting	9
macroecology	9
organisms	9
perturbation	9
prey	9
processes	9
reproduction	9
stochasticity	9
survival	9
abundance	8
age-structure	8
asymptotic	8
biomass	8
choice	8
constraints	8
displacement	8
entropy	8
evolutionarily	8
functions	8
gene	8
geometry	8
gradient	8
graph	8
intraspecific	8
law	8
local	8
marine	8
minimum	8
morphogenesis	8
physiology	8
random	8
rates	8
resilience	8
rna	8
rotifers	8
structured	8
trade-off	8
virus	8
anti-predator	7
availability	7
bacterial	7
bifurcations	7
birds	7
carrying	7
character	7
colonization	7
computer	7
cultures	7
delay	7
development	7
environment	7
exergy	7
genetic	7
heteroclinic	7
levels	7
map	7
mean	7
metacommunity	7
migration	7
numerical	7
periodic	7
preference	7
qualitative	7
reaction	7
recruitment	7
recycling	7
resistance	7
respiration	7
switching	7
variability	7
variance	7
algal	6
allee	6
allocation	6
aquatic	6
artificial	6
astrobiology	6
bacteriophage	6
batch	6
biology	6
branching	6
cascades	6
chemical	6
complementary	6
connectivity	6
coupled	6
criteria	6
criticality	6
cycling	6
density-dependent	6
dependent	6
disease	6
efficiency	6
epidemics	6
exobiology	6
exploitation	6
frequency	6
functioning	6
gradients	6
green	6
invariance	6
invasibility	6
linear	6
management	6
mixed	6
optimization	6
orbit	6
order	6
partitioning	6
pathogens	6
permanence	6
predators	6
prediction	6
range	6
refuge	6
rules	6
set	6
spatiotemporal	6
theoretical	6
transient	6
value	6
age-structured	5
aggregation	5
aids	5
algorithms	5
and	5
balance	5
biogeography	5
blooms	5
budgets	5
cancer	5
composition	5
correlation	5
costs	5
covariance	5
demography	5
digital	5
drosophila	5
energetic	5
experiment	5
experimental	5
forest	5
formation	5
genetics	5
grazing	5
higher	5
host	5
hysteresis	5
information	5
insect	5
insects	5
kernel	5
landscapes	5
link	5
loop	5
loss	5
mammals	5
matrices	5
maximum	5
mechanistic	5
mutation	5
nanotechnology	5
non-linear	5
null	5
percolation	5
phosphate	5
physiological	5
point	5
protozoa	5
ratio-dependent	5
reaction-diffusion	5
relationships	5
replicator	5
seed	5
sensitivity	5
sexual	5
silicate	5
simulations	5
size-structured	5
speciation	5
specific	5
spread	5
state	5
statistical	5
storage	5
symbiosis	5
theorem	5
transport	5
tree	5
validation	5
absorption	4
asymmetry	4
attraction	4
behavioral	4
benefits	4
biotic	4
boundary	4
budget	4
cannibalism	4
climate	4
competing	4
concentration	4
coral	4
critical	4
cyanobacteria	4
data	4
death	4
design	4
destruction	4
diagram	4
distance	4
distributed	4
drift	4
emergence	4
epidemic	4
equilibria	4
error	4
ess	4
essential	4
exploitative	4
exponent	4
factors	4
field	4
flow	4
fluctuating	4
freshwater	4
gompertz	4
heterogeneous	4
home	4
homoclinic	4
immigration	4
individual	4
integrodifference	4
intermediate	4
inverse	4
isoclines	4
keystone	4
length	4
leslie	4
markov	4
microcosm	4
microorganisms	4
monotone	4
morphology	4
movement	4
multispecies	4
mycorrhizal	4
number	4
nutrition	4
open	4
parasitoid	4
patchiness	4
patchy	4
phenotypic	4
probability	4
problem	4
process	4
programming	4
properties	4
rapid	4
regime	4
regression	4
reserves	4
secondary	4
settlement	4
shifts	4
similarity	4
software	4
spatio-temporal	4
stage-structured	4
statistics	4
substitutable	4
substrate	4
terrestrial	4
turbulence	4
type_iii	4
velocity	4
virtual	4
viruses	4
volterra	4
warming	4
acclimation	3
alien	3
aphytis	3
ascendency	3
attractors	3
autocorrelation	3
averaging	3
basic	3
basins	3
biochemical	3
biofilm	3
biogeochemical	3
birth	3
bistability	3
bloom	3
brachionus	3
breadth	3
building	3
characteristic	3
characteristics	3
chemoton	3
coli	3
conditional	3
content	3
contingency	3
cost	3
defence	3
degree	3
delays	3
depth	3
diatom	3
diet	3
dimension	3
disc	3
dominance	3
endemic	3
envionment	3
epidemiological	3
escherichia	3
estimation	3
exotic	3
expression	3
facilitation	3
fisher	3
fisheries	3
fluid	3
flux	3
frequency-dependent	3
fundamental	3
generalist	3
graphs	3
grazer	3
herbivore	3
hierarchies	3
histories	3
hiv-1	3
holling	3
homeostasis	3
hydrodynamics	3
impact	3
increase	3
index	3
infections	3
integration	3
intransitivity	3
iron	3
island	3
isocline	3
maps	3
material	3
mean-field	3
mechanisms	3
meta-analysis	3
method	3
minimal	3
mixing	3
motility	3
mycorrhiza	3
net	3
neural	3
nonlinearity	3
npz	3
of	3
origin	3
overlap	3
perturbations	3
phage	3
phase	3
phenomenological	3
phosphorous	3
physical	3
press	3
pressure	3
priority	3
propagule	3
protein	3
quantitative	3
quantum	3
ratios	3
redfield	3
reduction	3
redundancy	3
reef	3
refugia	3
relation	3
relationship	3
reserve	3
resolution	3
ricker	3
rock-paper-scissors	3
sampling	3
scales	3
sea	3
searching	3
self-organized	3
self-thinning	3
silicon	3
simple	3
singular	3
small	3
source-sink	3
speed	3
steady-state	3
strange	3
stress	3
structures	3
subdivision	3
sucession	3
supply	3
susbtitutable	3
synchrony	3
three	3
topology	3
traits	3
treatments	3
tritrophic	3
trout	3
turnover	3
type_i	3
type_ii	3
vectors	3
versus	3
viability	3
walk	3
water	3
waves	3
webworld	3
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aboveground	2
activity	2
additive	2
advection	2
affinity	2
age	2
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anova	2
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arrhenius	2
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baci	2
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bacillariophyta	2
bacterioplankton	2
basin	2
bayesian	2
behavioural	2
belowground	2
benthic	2
beverton-holt	2
bioenergetics	2
biogeochemistry	2
biophysics	2
birth-death	2
bi-stability	2
boundaries	2
boundedness	2
calyciflorus	2
capture	2
cerevisiae	2
chaotic	2
chlorophyll	2
ciliates	2
classification	2
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comparison	2
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compustat	2
concepts	2
conflict	2
conservative	2
consumerresource	2
contact	2
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correlated	2
co-variation	2
cross	2
crowding	2
current	2
curves	2
cybernetics	2
debate	2
decision	2
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deep	2
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density-dependence	2
description	2
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diffusion-limited	2
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digraph	2
dinoflagellate	2
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discovery	2
distributions	2
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drag	2
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	Implementing behaviour in individual-based models using neural networks and genetic algorithms [My Copy] Evolutionary Ecology, Vol. 13 (1999), pp. 469-483. by G. Huse, E. Strand, J. Giske posted to behaviour adaptation articles algorithms artificial choice dependence dynamic genetic habitat individual-based model networks neural programming state stochastic by tomrevilla on 2008-03-16 21:32:06 as
	Ecology in Mare Pentium: an individual-based spatio-temporal model for sh with adapted behaviour [My Copy] Fisheries Research, Vol. 37 (1998), pp. 163-178. by G. Huse, J. Giske posted to individual-based spatio-temporal distribution fish movement spatial articles algorithms genetic networks neural by tomrevilla on 2008-03-16 21:32:06 as
	Modelling spatial dynamics of fsh [My Copy] Reviews in Fisk Biology and Fisheries, Vol. 8 (1998), pp. 57-91. by J. Giske, G. Huse, O. Fiksen posted to optimization articles algorithms dynamics fish foraging game genetic history life optimal predation risk spatial theory by tomrevilla on 2008-03-16 21:31:50 as
	EUZONE: Simulating, the Evolution of Aquatic Ecosystems [My Copy] Artificial Life, Vol. 3, No. 4. (1997), pp. 307-333. by K. Downing posted to plankton articles algorithms ecosystem evolution gaia genetic programming theory by tomrevilla on 2008-03-16 21:31:29 as
	State-space models for the dynamics of wild animal populations [My Copy] Ecological Modelling, Vol. 171 (2004), pp. 157-175. by S. T. Buckland, K. B. Newman, L. Thomas, N. B. Koesters posted to articles algorithms dynamics filtering generalised leslie matrix models open population recursive state-space by tomrevilla on 2008-03-16 21:31:22 as

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