tonamswish's bioinfo [156 articles] Export

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	An integrative model for recurrence in ovarian cancer. [My Copy] Molecular cancer, Vol. 7 (22 January 2008), 8. by Alexandros Laios, Sharon A. O'Toole, Richard Flavin, et al.Cara Martin, Martina Ring, Noreen Gleeson, Tom D'Arcy, Eamonn P. McGuinness, Orla Sheils, Brian L. Sheppard, John J. O' Leary posted to recurrence ovary ovarian_cancer mrnaarray gene_signature bioinfo by tonamswish on 2009-11-23 13:08:21 as
	A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments [My Copy] Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 374-382. by Fangxin Hong, Rainer Breitling posted to tool meta_analysis bioinfo by tonamswish on 2009-11-18 21:55:31 as along with 10 people ipark-kaist lwaldron daforerog dswan talponer guhjy cannin jfr shigepong jdiezperezj
	Stability and aggregation of ranked gene lists [My Copy] Brief Bioinform, Vol. 10, No. 5. (1 September 2009), pp. 556-568. by Anne-Laure Boulesteix, Martin Slawski posted to tool review meta_analysis bioinfo by tonamswish on 2009-11-18 21:12:48 as along with 3 people daforerog lwaldron druvus
	RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2825-2827. by Fangxin Hong, Rainer Breitling, Connor W. McEntee, Ben S. Wittner, Jennifer L. Nemhauser, Joanne Chory posted to tool meta_analysis bioinfo by tonamswish on 2009-11-18 20:58:09 as along with 5 people daforerog bertelsen shikin dswan natstreet
	How to infer gene networks from expression profiles [My Copy] Molecular Systems Biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to review network bioinfo by tonamswish on 2009-11-18 15:32:48 as along with 38 people and 3 groups Jporci beete zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
	High DNA melting temperature predicts transcription start site location in human and mouse [My Copy] Nucl. Acids Res. (9 October 2009), gkp821. by David G. Dineen, Andreas Wilm, Padraig Cunningham, Desmond G. Higgins posted to tss promoter_prediction promoter bioinfo by tonamswish on 2009-11-17 14:06:33 as along with 2 people Fernando_FF polivares
	IRESite--a tool for the examination of viral and cellular internal ribosome entry sites. [My Copy] Nucleic acids research (16 November 2009), gkp981. by Martin Mokrejs, Tomás Masek, Václav Vopálensky, Petr Hlubucek, Philippe Delbos, Martin Pospísek posted to web_server ire bioinfo by tonamswish on 2009-11-17 03:41:32 as along with 1 person and 1 group ppgardne Journal picks
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to tool sequencing review read next_generation bioinfo by tonamswish on 2009-11-12 13:16:00 as along with 28 people and 5 groups cthachuk hzoltan heliopais giovenko jfr torfinnnome daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	Analysis of a kinetic model for melanin biosynthesis pathway. [My Copy] Journal of Biological Chemistry, Vol. 267, No. 6. (25 February 1992), pp. 3801-3810. by J. N. RodrÃguez-LÃ³pez, J. Tudela, R. VarÃ³n, F. GarcÃa-Carmona, F. GarcÃa-CÃ¡novas posted to tool simulator kinetic_model bioinfo by tonamswish on 2009-11-11 02:54:34 as
	An empirical Bayesian approach for model-based inference of cellular signaling networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 371. by David Klinke posted to tool simulator kinetic_model egf bioinfo by tonamswish on 2009-11-11 02:46:07 as along with 4 people zufar karthikraman cmzmasek renatomilani
	KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (08 October 2009), 324. by Konstantinos Moutselos, Ioannis Kanaris, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos Kolisis posted to tool simulator kinetic_model kegg bioinfo by tonamswish on 2009-11-11 02:39:23 as along with 8 people and 1 group Thaverkamp sillitoe trogdor druvus ptrobajo dullhunk reyez renatomilani Orengo Group Journal Picks
	integrOmics: an R package to unravel relationships between two omics datasets [My Copy] Bioinformatics, Vol. 25, No. 21. (25 August 2009), pp. 2855-2856. by Kim-Anh Le Cao, Ignacio Gonzalez, Sebastien Dejean posted to tool correlation_analysis bioinfo by tonamswish on 2009-11-10 15:51:43 as along with 17 people and 1 group molnet-mna jperkins dswan mayercd operon kshameer heliopais dolchan nuin ptrobajo sebastien_vigneau rdiaz cassj brianb neils natstreet druvus Orengo Group Journal Picks
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to tool rna-seq review chip-seq bioinfo by tonamswish on 2009-11-09 18:05:33 as along with 23 people and 2 groups urgi Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (2 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to tool rna-seq bioinfo by tonamswish on 2009-11-09 18:04:04 as along with 27 people and 2 groups hzoltan darian dakelley inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl stajich n00c torfinnnome nuin kshameer neils druvus natstreet BergmanLab Mycology
	Beyond Mfold: recent advances in RNA bioinformatics. [My Copy] Journal of biotechnology, Vol. 124, No. 1. (25 June 2006), pp. 41-55. by Jens Reeder, Matthias Höchsmann, Marc Rehmsmeier, Björn Voss, Robert Giegerich posted to tool rna_secondary_structure_prediction bioinfo by tonamswish on 2009-11-09 18:02:55 as along with 20 people and 4 groups heliopais daforerog danaiancu rb_india ellarond GustavoLacerda hrogers marcius eckart_bindewald tardigrade andersbj arcticrasta mtagaya condon Hosna Eonwe cthachuk stajich physics reyez microRNA beta BioinfoCIPF SGU-CIPF
	Motif-directed network component analysis for regulatory network inference [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 1. (2008), S21. by Chen Wang, Jianhua Xuan, Li Chen, et al.Po Zhao, Yue Wang, Robert Clarke, Eric Hoffman posted to tf regulatory_network network bioinfo by tonamswish on 2009-11-04 20:12:32 as along with 3 people topsoil roys guhjy
	An Embryonic Stem CellâLike Signature Identifies Poorly Differentiated Lung Adenocarcinoma but not Squamous Cell Carcinoma [My Copy] Clinical Cancer Research, Vol. 15, No. 20. (15 October 2009), pp. 6386-6390. by Khaled A. Hassan, Guoan Chen, Gregory P. Kalemkerian, Max S. Wicha, David G. Beer posted to stem_cell stem lung_cancer gene_signature expression_profiles bioinfo by tonamswish on 2009-11-02 18:35:08 as
	Increased MicroRNA Activity in Human Cancers [My Copy] PLoS ONE, Vol. 4, No. 6. (25 June 2009), e6045. by Ariel Israel, Roded Sharan, Eytan Ruppin, Eithan Galun posted to tf mrnaarray microrna-mrna microrna bioinfo by tonamswish on 2009-11-02 14:31:27 as along with 3 people and 1 group guhjy frohike ealloza microRNA
	Tissue and Process Specific microRNA–mRNA Co-Expression in Mammalian Development and Malignancy [My Copy] PLoS ONE, Vol. 4, No. 5. (5 May 2009), e5436. by Hongye Liu, Issac S. Kohane posted to tool microrna-mrna microrna bioinfo by tonamswish on 2009-10-30 15:31:37 as along with 4 people and 1 group gdb giovenko roys ealloza microRNA
	Global and Local Architecture of the Mammalian microRNA–Transcription Factor Regulatory Network [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007), e131. by Reut Shalgi, Daniel Lieber, Moshe Oren, Yitzhak Pilpel posted to network microrna-tf microrna-mrna microrna bioinfo by tonamswish on 2009-10-30 15:09:54 as along with 17 people and 2 groups danaiancu myzhang daforerog mtagaya jfr andersbj rdiaz sebastien_vigneau ealloza zwang bootsy cabbagezs rahulthadani heliopais ale maralena kevinemamy Bioinformatics microRNA
	CisModule: De novo discovery of cis-regulatory modules by hierarchical mixture modeling [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 33. (17 August 2004), pp. 12114-12119. by Qing Zhou, Wing H. Wong posted to tool tf hmm crm bioinfo by tonamswish on 2009-10-30 14:00:29 as along with 4 people and 1 group isimpson indigoviolet dpollard ep161302 EisenLab
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to tool enhancer chip-seq bioinfo by tonamswish on 2009-10-27 19:20:00 as along with 23 people and 2 groups hzoltan ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony dpollard caseybrown biomcgary xingxu idonaldson djkt RockmanLab cis-regulatory-evolution
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to tool hmm chip-seq bioinfo bayesian by tonamswish on 2009-10-27 13:08:34 as along with 11 people and 4 groups Vincent_Rouilly dswan fenghezi inesdesantiago idonaldson polivares mkiyer druvus stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome [My Copy] PLoS ONE, Vol. 4, No. 5. (12 May 2009), e5501. by Kyoung-Jae Won, Saurabh Agarwal, Li Shen, Robert Shoemaker, Bing Ren, Wei Wang posted to tool tf hmm chip-seq bioinfo by tonamswish on 2009-10-27 03:01:09 as along with 3 people and 1 group guhjy idonaldson cisevol BergmanLab
	Profile Comparer: a program for scoring and aligning profile hidden Markov models [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2630-2631. by Martin Madera posted to tool profile_hmm hmm bioinfo by tonamswish on 2009-10-27 02:31:05 as along with 3 people and 1 group j3xucite djkt nuin iSEEM
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to hmm chip-seq chip-chip bioinfo by tonamswish on 2009-10-27 02:15:59 as along with 12 people and 1 group jfr rdiaz fpattyn jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 idonaldson humburg Journal picks
	Bayesian modeling of ChIP-chip data using latent variables [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 352. by Mingqi Wu, Faming Liang, Yanan Tian posted to chip-chip bioinfo bayesian_models bayesian by tonamswish on 2009-10-26 21:21:50 as
	Bioinformatics construction of the human cell surfaceome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 39. (29 September 2009), pp. 16752-16757. by J. P. da Cunha, P. A. Galante, J. E. de Souza, et al.R. F. de Souza, P. M. Carvalho, D. T. Ohara, R. P. Moura, S. M. Oba-Shinja, S. K. Marie, W. A. Silva, R. O. Perez, B. Stransky, M. Pieprzyk, J. Moore, O. Caballero, J. Gama-Rodrigues, A. Habr-Gama, W. P. Kuo, A. J. Simpson, A. A. Camargo, Lloyd J. Old, S. J. de Souza posted to surface_protein bioinfo by tonamswish on 2009-10-26 12:58:56 as along with 3 people frohike renatomilani phoenixzxl
	A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2787-2794. by Andreas Keller, Christina Backes, Andreas Gerasch, et al.Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof posted to tool gsea bioinfo bayesian by tonamswish on 2009-10-24 18:30:00 as along with 9 people and 1 group bertelsen jperkins heliopais dolchan greg zufar rdiaz ptrobajo brianb Orengo Group Journal Picks
	A map of human cancer signaling [My Copy] Molecular Systems Biology, Vol. 3 (18 December 2007) by Qinghua Cui, Yun Ma, Maria Jaramillo, et al.Hamza Bari, Arif Awan, Song Yang, Simo Zhang, Lixue Liu, Meng Lu, Maureen O'Connor-McCourt, Enrico O. Purisima, Edwin Wang posted to systems_biology network bioinfo by tonamswish on 2009-10-23 05:20:12 as along with 12 people and 1 group poojamaj Zephyrus agomez shikin jfr tmmurali ealloza cjeans Ema renatomilani srp33 frohike Roswell Cancer Crosstalk
	Predicting tissue-specific enhancers in the human genome [My Copy] Genome Research, Vol. 17, No. 2. (8 February 2007), pp. 201-211. by Len A. Pennacchio, Gabriela G. Loots, Marcelo A. Nobrega, Ivan Ovcharenko posted to tool enhancer bioinfo by tonamswish on 2009-10-19 23:00:14 as along with 7 people and 1 group cisstem indigoviolet cwbrown maximilianh heliopais roys barwil EisenLab
	Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (02 November 2007), 427. by Jeff Chou, Tong Zhou, William Kaufmann, Richard Paules, Pierre Bushel posted to tool epig clustering_tool clustering bioinfo by tonamswish on 2009-10-19 18:52:45 as along with 6 people and 1 group thegoose2 tharris shigepong hpaces dps renatomilani C. elegans / WormBase
	Improved RNA secondary structure prediction by maximizing expected pair accuracy [My Copy] RNA, Vol. 15, No. 10. (24 October 2009), pp. 1805-1813. by Zhi J. Lu, Jason W. Gloor, David H. Mathews posted to rna_secondary_structure_prediction rna_secondary_structure bioinfo by tonamswish on 2009-10-09 17:04:20 as along with 1 person heliopais
	Using expression profiling data to identify human microRNA targets [My Copy] Nature Methods, Vol. 4, No. 12. (18 November 2007), pp. 1045-1049. by Jim C. Huang, Tomas Babak, Timothy W. Corson, et al.Gordon Chua, Sofia Khan, Brenda L. Gallie, Timothy R. Hughes, Benjamin J. Blencowe, Brendan J. Frey, Quaid D. Morris posted to microrna_target microrna let-7b let-7 genmir cdc25a bioinfo bcl7a by tonamswish on 2009-10-09 16:55:46 as along with 15 people and 2 groups danaiancu daforerog megraw capitall askrajiv gracio jfr tmmurali cjeans lp2 fpattyn Alexander_Kanitz guhjy heliopais giovenko BenosLab microRNA
	Statistical Use of Argonaute Expression and RISC Assembly in microRNA Target Identification [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (25 September 2009), e1000516. by Stephen A. Stanhope, Srikumar Sengupta, Johan den Boon, Paul Ahlquist, Michael A. Newton posted to microrna bioinfo ago by tonamswish on 2009-10-09 16:45:52 as along with 3 people and 1 group heliopais gdb guhjy microRNA
	Genomic analysis of human microRNA transcripts [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17719-17724. by Harpreet K. Saini, Sam Griffiths-Jones, Anton J. Enright posted to tss switchgear microrna eponine bioinfo by tonamswish on 2009-10-05 18:32:17 as along with 18 people and 1 group danaiancu daforerog druvus heliopais jfr guhjy tmmurali dchughes AbnerCYH ealloza bootsy lp2 cabbagezs maximilianh RedmondSmyth gracio maralena tolot27 microRNA
	HRTBLDb: an informative data resource for hormone receptors target binding loci [My Copy] Nucl. Acids Res. (22 September 2009), gkp734. by Brian A. Kennedy, Wenqing Gao, Tim H. M. Huang, Victor X. Jin posted to hormone_receptor database bioinfo by tonamswish on 2009-09-29 15:20:33 as
	TransmiR: a transcription factor-microRNA regulation database. [My Copy] Nucleic acids research (28 September 2009), gkp803. by Juan Wang, Ming Lu, Chengxiang Qiu, Qinghua Cui posted to tf microrna database bioinfo by tonamswish on 2009-09-29 15:10:33 as along with 7 people and 2 groups guhjy frohike daforerog epinatel heliopais ealloza samgj cube_and_beyond microRNA
	GEMS (Gene Expression MetaSignatures), a Web resource for querying meta-analysis of expression microarray datasets: 17beta-estradiol in MCF-7 cells. [My Copy] Cancer research, Vol. 69, No. 1. (1 January 2009), pp. 23-26. by Scott A. Ochsner, David L. Steffen, Susan G. Hilsenbeck, Edward S. Chen, Christopher Watkins, Neil J. McKenna posted to metastasis mcf7 gene_signature gems bioinfo by tonamswish on 2009-09-24 20:33:42 as along with 2 people daforerog jfr
	ChIP-Seq of ER\|[alpha]\| and RNA polymerase II defines genes differentially responding to ligands [My Copy] EMBO J, Vol. 28, No. 10. (04 April 2009), pp. 1418-1428. by Willem-Jan Welboren, Marc A. van Driel, Eva M. Janssen-Megens, et al.Simon J. van Heeringen, Fred C. G. J. Sweep, Paul N. Span, Hendrik G. Stunnenberg posted to tamoxifen pol2 mcf7 era chip-seq bioinfo by tonamswish on 2009-09-20 03:48:16 as along with 1 person ewilban1
	Comparative study on ChIP-seq data: normalization and binding pattern characterization [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2334-2340. by Cenny Taslim, Jiejun Wu, Pearlly Yan, et al.Greg Singer, Jeffrey Parvin, Tim Huang, Shili Lin, Kun Huang posted to tool oht normalization mcf7 chip-seq bioinfo by tonamswish on 2009-09-20 03:44:03 as along with 8 people and 2 groups Stew stubrown inesdesantiago ewilban1 guhjy mkiyer humburg rschulz Bioinformatics - CRUK Chinnaiyan Lab
	ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W280-286. by Ivan Ovcharenko, Marcelo A. Nobrega, Gabriela G. Loots, Lisa Stubbs posted to tool regulatory_element phylogenetics bioinfo by tonamswish on 2009-09-18 02:04:06 as along with 1 person and 1 group guhjy Bioinformatics
	Identifying estrogen receptor alpha target genes using integrated computational genomics and chromatin immunoprecipitation microarray. [My Copy] Nucleic acids research, Vol. 32, No. 22. (2004), pp. 6627-6635. by Victor X. Jin, Yu-Wei W. Leu, Sandya Liyanarachchi, et al.Hao Sun, Meiyun Fan, Kenneth P. Nephew, Tim H-M H. Huang, Ramana V. Davuluri posted to target pssm era database bioinfo by tonamswish on 2009-09-17 21:44:44 as along with 1 person jfr
	Genome-Wide Identification of Estrogen Receptor alpha-Binding Sites in Mouse Liver [My Copy] Mol Endocrinol, Vol. 22, No. 1. (1 January 2008), pp. 10-22. by Hui Gao, Susann Falt, Albin Sandelin, Jan-Ake Gustafsson, Karin Dahlman-Wright posted to era chip-chip bioinfo by tonamswish on 2009-09-17 21:42:51 as along with 2 people guhjy yevishere
	ChIP\|[ndash]\|seq: advantages and challenges of a maturing technology [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (08 September 2009), pp. 669-680. by Peter J. Park posted to review chip_seq bioinfo by tonamswish on 2009-09-14 14:33:22 as along with 24 people and 6 groups akakak hzoltan dchughes RyuOgawa heliopais giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez qayub fenghezi robertrentzsch polivares idonaldson rschulz cvaldes danmaclean Journal picks Orengo Group Journal Picks JLab BergmanLab CTCF Chromatin
	Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application. [My Copy] BMC bioinformatics, Vol. 10 Suppl 6, No. Suppl 6. (2009), S20. by Maria G. Roubelakis, Pantelis Zotos, Georgios Papachristoudis, et al.Ioannis Michalopoulos, Kalliopi I. Pappa, Nicholas P. Anagnou, Sophia Kossida posted to tool microrna bioinfo by tonamswish on 2009-09-14 01:42:33 as along with 3 people and 2 groups PabloMarin guhjy daforerog Journal picks microRNA
	The SBML discrete stochastic models test suite [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 285-286. by Thomas W. Evans, Colin S. Gillespie, Darren J. Wilkinson posted to tool simulator network_simulator bioinfo by tonamswish on 2009-09-12 13:02:07 as along with 3 people csgillespie mailund Ema
	Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (1 May 2009), e60. by Vivek Jayaswal, Mark Lutherborrow, David D. F. Ma, Yee Hwa Yang posted to mrna module microrna bioinfo by tonamswish on 2009-09-01 15:01:09 as along with 6 people and 1 group sterovetta guhjy nuin ericsuh ealloza pengchy microRNA
	Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources [My Copy] Nature Protocols, Vol. 4, No. 1. (18 December 2008), pp. 44-57. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to tool pathway_tool david bioinfo by tonamswish on 2009-09-01 14:23:44 as along with 16 people and 2 groups darian rschulz jperkins operon VGreiff jfr Stew bertelsen Sonix dswan guhjy wimufi brianb idonaldson mrochman daforerog Bioinformatics - CRUK Bioinformatics
	Signal transduction pathway profiling of individual tumor samples [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 163. by Thomas Breslin, Morten Krogh, Carsten Peterson, Carl Troein posted to pathway_tool bioinfo by tonamswish on 2009-08-31 16:42:13 as

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microrna	205
review	175
bioinfo	156
cancer	148
tool	98
stem	89
emt	64
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breast	36
chromatin	33
network	33
tf	32
mrnaarray	31
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era	27
differentiation	26
er	23
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ovary	22
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gene_signature	19
nfkb	19
epigenetics	18
human	18
promoter	18
pathway	17
cancer_stem_cell	16
let-7	16
gsea	15
hypoxia	15
lin28	15
p53	14
dna_methylation	13
mirna	13
bayesian	12
micrornaarray	12
pirna	12
pluripotency	12
tss	12
mir-21	11
mouse	11
nucleosome	11
chip-chip	10
cmyc	10
e-cadherin	10
expression_profiles	10
inflammation	10
ncrna	10
repeat	10
simulation_data	10
tgfb	10
co-clustering	9
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enhancer	9
mcf7	9
network_simulator	9
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pol2	8
tumor	8
akt	7
development	7
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erk5	7
h3k4me3	7
hmm	7
mapk	7
microenvironment	7
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mir-145	7
mir-17	7
mmp	7
myc	7
oct4	7
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ras	7
sox2	7
ago	6
apoptosis	6
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database	6
dnmt	6
embryonic_stem_cell	6
hypersensitive_site	6
lipid	6
microrna_gene_signature	6
microtubule	6
nanog	6
pssm	6
rna-seq	6
systems_biology	6
target	6
bmp	5
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era_target	5
gene_expression_signature	5
hdac	5
hif	5
lung	5
met	5
meta_analysis	5
mir-143	5
mta1	5
ppi	5
rac	5
rna_binding_protein	5
simulator	5
stem_cell	5
stemness	5
transcription	5
web_server	5
wnt	5
zeb2	5
binding_motif	4
brain	4
cell_cycle	4
cell_migration	4
cytoscape	4
dicer	4
dna_loop	4
dnase	4
drosha	4
ecm	4
erk	4
estrogen	4
estrogen_receptor	4
ezh2	4
hur	4
lipidomics	4
mesenchymal	4
microrna-tf	4
mir-1	4
mir-125b	4
mir-17-92	4
mir-200	4
mir-205	4
mir-210	4
mitochondria	4
mmp9	4
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notch	4
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pathway_tool	4
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protocol	4
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tamoxifen	4
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zeb1	4
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cd44_pos	3
chip_seq	3
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circadian_clock	3
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cpg	3
cross_talk	3
deep_sequencing	3
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embryonic_stem_cells	3
epithelial	3
er_target	3
fgf	3
fgf2	3
geo	3
h3k27me3	3
hypersensitive	3
kinetic_model	3
kras	3
leukemia	3
mef2	3
mek5	3
microrna-mrna	3
microrna_target	3
mir-200b	3
mir-200c	3
mir-203	3
mir-206	3
mir-221	3
mir-222	3
mir-302	3
mir-31	3
mir-9	3
model	3
mtor	3
multivariate	3
naive_bayes	3
neuronal_development	3
nuclear_hormone_receptor	3
ovarian_cancer	3
pak	3
proliferation	3
rest	3
retrotransposon	3
rna	3
sirna	3
snail	3
statistics	3
structure	3
tnfa	3
warburg_effect	3
yb1	3
14-3-3zeta	2
akt_pathway	2
ampk	2
arnt	2
atxn1	2
autoclass	2
axon_guidance	2
b_catenin	2
bicluster	2
bioconductor	2
biogenesis	2
bmi1	2
bmp6	2
cd24_neg	2
cdc25a	2
c_elegans	2
cell	2
cell_growth	2
cell_proliferation	2
chd1	2
chromatin_remodeling_enzyme	2
circadian	2
clock	2
cluster	2
clustering	2
colon_cancer	2
colorectal	2
cross_correlation	2
cyclin_d1	2
dgcr8	2
dnase1	2
drosophila	2
e2f1	2
egfr	2
eponine	2
erb	2
erbb	2
erbb2	2
erk1	2
erk2	2
erk_pathway	2
er_negative	2
fusion_gene	2
growth_factor	2
gsk3	2
h3k36me3	2
h3k4me2	2
hat	2
hif1	2
hmga2	2
hormone_receptor	2
human_embryonic_stem_cells	2
image	2
immue	2
immunology	2
inflammatory_responses	2
integrin	2
ire	2
kegg	2
klf4	2
learning	2
lna	2
lung_adenocarcinoma	2
mek	2
melanoma	2
microrna_processing	2
mir-106	2
mir-107	2
mir-126	2
mir-130	2
mir-133	2
mir-134	2
mir-137	2
mir-141	2
mir-15a	2
mir-15b	2
mir-18a	2
mir-200a	2
mir-223	2
mir-23a-27a-24-2	2
mir-290	2
mir-295	2
mir-328	2
mir-34	2
mir-367	2
mir-451	2
mir-7	2
mir-92	2
mitf	2
neurogenesis	2
normalization	2
nuclear_receptors	2
p63	2
pak1	2
pax6	2
pcg	2
physicochemical	2
pol	2
pr	2
probabilistic_learning	2
protein_interaction	2
rac1	2
rac3	2
raf	2
ras_pathway	2
regulatory_element	2
repetitive_elements	2
rna_secondary_structure_prediction	2
ros	2
runx2	2
sbml	2
sequence_analysis	2
sip1	2
skin	2
slug	2
splicing	2
src	2
srf	2
stem_cells	2
swi	2
switchgear	2
synthetic	2
transcriptome	2
transdifferentiation	2
transfac	2
vegf	2
wnt5a	2
ybx1	2
21urna	1
3utr	1
abcg2	1
acetylation	1
actin	1
actin_cytoskeleton	1
adamts1	1
ago2	1
ahr	1
akt2	1
alt	1
alternative_promoter	1
alu_sequences	1
alzheimer	1
ampk_signal	1
anchroage	1
antagomir	1
ap1	1
apt1	1
argonaute	1
arrayexpress	1
ars2	1
artery	1
atk1	1
automation	1
bak1	1
bayesian_models	1
b_cell	1
b_cells	1
bcl6	1
bcl7a	1
bcrp	1
biclustering	1
biomarker	1
bladder_cancer	1
blimp1	1
bmp4	1
bmp_signaling	1
bndb	1
bn_plusplus	1
bone	1
bromodomain	1
cadherin	1
camkii	1
caner	1
cbc	1
cbp	1
cd44	1
cdc	1
cdc42	1
cdna	1
cell_adhesion	1
cellline	1
cell_survival	1
cell_type_specific	1
chemo	1
chicken	1
chip-pet	1
chromosomal_instability	1
classifier	1
clustering_tool	1
cml	1
cmyb	1
co-activator	1
cold_stress	1
colon_cancer_cells	1
colorectal_cancer	1
commerical	1
composite_elements	1
computational_method	1
copasi	1
co-rest	1
coronary	1
correlation_analysis	1
cortactin	1
cox2	1
crm	1
cry1	1
ctbp	1
ctcf	1
curt	1
cxcl12	1
cxcr4	1
cyclin_	1
cyclin_b	1
cyclin_e	1
cymc	1
cytokine	1
david	1
decidualization	1
dlx2	1
dlx6	1
dna	1
dna_methylomes	1
dnmt1	1
dnmt3	1
dnmto	1
dot1l	1
drug	1
dsfmbt	1
e2	1
e_cadherin	1
eed	1
elk1	1
em	1
e-map	1
embrynoic	1
emi	1
endcrine	1
endometrial_cancer	1
endotoxemia	1
ep300	1
epig	1
erbb3	1
erk_signaling	1
ets	1
euchromatin	1
evf2	1
evolution	1
exon_tethering	1
expression	1
fascin	1
feed_foward	1
fgf1	1
fgf7	1
fgfr	1
fgfr2	1
findpeak	1
food_nutrition	1
fox2	1
foxg1	1
foxo	1
foxp3	1
fscn1	1
future_study	1
g9a	1
gastric_cancer	1
gems	1
gene	1
genetic_instability	1
genetic_interaction	1
genetic_linkage	1
genmir	1
genome_rearrangement	1
genomica	1
germ	1
gli	1
gli1	1
gli2	1
glial_cells	1
glioblastoma	1
glioma	1
glm	1
glucocorticoid_receptor	1
gnuplot	1
gr	1
grn	1
growth	1
h2ax	1
h3k4	1
h3k4me1	1
h3k56ac	1
h3k79me3	1
h3k9	1

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